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Gencode Genes

ZSCAN10 (ENST00000576985.6) at chr16:3088890-3099294 - Homo sapiens zinc finger and SCAN domain containing 10 (ZSCAN10), transcript variant 1, mRNA. (from RefSeq NM_032805)
ZSCAN10 (ENST00000577059.1) at chr16:3092451-3099270 - zinc finger and SCAN domain containing 10 (from HGNC ZSCAN10)
ZSCAN10 (ENST00000576483.1) at chr16:3092229-3099294 - Contains 1 SCAN box domain. (from UniProt I3L0Q3)
ZSCAN10 (ENST00000575108.5) at chr16:3088894-3099292 - Homo sapiens zinc finger and SCAN domain containing 10 (ZSCAN10), transcript variant 5, mRNA. (from RefSeq NM_001365273)
ZSCAN10 (ENST00000573931.1) at chr16:3096450-3099292 - zinc finger and SCAN domain containing 10 (from HGNC ZSCAN10)
ZSCAN10 (ENST00000572548.1) at chr16:3090552-3099261 - Contains 1 SCAN box domain. (from UniProt I3NI43)
ZSCAN10 (ENST00000572431.1) at chr16:3090234-3099228 - zinc finger and SCAN domain containing 10 (from HGNC ZSCAN10)
ZSCAN10 (ENST00000571903.5) at chr16:3090232-3093236 - zinc finger and SCAN domain containing 10 (from HGNC ZSCAN10)
ZSCAN10 (ENST00000538082.5) at chr16:3088989-3099295 - Homo sapiens zinc finger and SCAN domain containing 10 (ZSCAN10), transcript variant 4, mRNA. (from RefSeq NM_001365272)
ZSCAN10 (ENST00000252463.6) at chr16:3088894-3092860 - Embryonic stem (ES) cell-specific transcription factor  required to maintain ES cell pluripotency. Can both activate and  /or repress expression of target genes, depending on the context.  Specifically binds the 5'-[GA]CGCNNGCG[CT]-3' DNA consensus  sequence. Regulates expression of POU5F1/OCT4, ZSCAN4 and  ALYREF/THOC4 (By similarity). (from UniProt Q96SZ4)
POU5F1 (ENST00000451077.6) at chr6_GL000251v2_alt:2646761-2648702 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000429314.2) at chr6_GL000256v2_alt:2467753-2469694 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000412166.6) at chr6_GL000252v2_alt:2423653-2425594 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000433348.2) at chr6_GL000253v2_alt:2474838-2476779 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000419095.2) at chr6_GL000254v2_alt:2508452-2510393 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000376243.8) at chr6_GL000255v2_alt:2422370-2424311 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 2, mRNA. (from RefSeq NM_203289)
POU5F1 (ENST00000434616.2) at chr6_GL000252v2_alt:2423653-2430027 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000454714.6) at chr6_GL000253v2_alt:2474838-2481213 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000433063.6) at chr6_GL000254v2_alt:2508452-2514827 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000383524.4) at chr6_GL000255v2_alt:2422370-2428743 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000429603.2) at chr6_GL000251v2_alt:2646761-2653135 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000437747.6) at chr6_GL000256v2_alt:2467753-2474125 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
POU5F1 (ENST00000259915.13) at chr6:31164337-31170682 - Homo sapiens POU class 5 homeobox 1 (POU5F1), transcript variant 1, mRNA. (from RefSeq NM_002701)
SOX2 (ENST00000325404.3) at chr3:181711925-181714436 - Homo sapiens SRY-box transcription factor 2 (SOX2), mRNA. (from RefSeq NM_003106)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_032805.2 at chr16:3088890-3099317
NM_001282416.1 at chr16:3088890-3099317
NM_001282415.1 at chr16:3088890-3099317

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017023791.1 at chr16:3088894-3093168
XM_017023792.1 at chr16:3088894-3093168

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

ZSCAN10 at chr16:3088890-3099294

RefSeq Genes

ZSCAN10 at chr16:3088891-3099294 - (NM_001282416) zinc finger and SCAN domain-containing protein 10 isoform 3
ZSCAN10 at chr16:3088891-3099294 - (NM_001282415) zinc finger and SCAN domain-containing protein 10 isoform 2
ZSCAN10 at chr16:3088891-3099294 - (NM_001365272) zinc finger and SCAN domain-containing protein 10 isoform 4
ZSCAN10 at chr16:3088891-3099294 - (NM_001365273) zinc finger and SCAN domain-containing protein 10 isoform 2
ZSCAN10 at chr16:3088891-3099294 - (NM_032805) zinc finger and SCAN domain-containing protein 10 isoform 1

Non-Human RefSeq Genes

Zscan10 at chr16:3089062-3099312 - (NM_001106981) zinc finger and SCAN domain-containing protein 10
ZSCAN10 at chr16:3089091-3092772 - (NM_001192113) zinc finger and SCAN domain-containing protein 10
Zscan10 at chr16:3089088-3099312 - (NM_001289483) zinc finger and SCAN domain-containing protein 10 isoform 4
Zscan10 at chr16:3089088-3099312 - (NM_001289482) zinc finger and SCAN domain-containing protein 10 isoform 3
Zscan10 at chr16:3089088-3099312 - (NM_001289484) zinc finger and SCAN domain-containing protein 10 isoform 5
Zscan10 at chr16:3089088-3099312 - (NM_001289481) zinc finger and SCAN domain-containing protein 10 isoform 2
Zscan10 at chr16:3089088-3099312 - (NM_001033425) zinc finger and SCAN domain-containing protein 10 isoform 1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

ZSCAN10 at chr16:3088890-3099294
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

ZSCAN10 at chr16:3088890-3099294
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

ZSCAN10 at chr16:3088890-3099317
ZSCAN10 at chr16:3088894-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

ZSCAN10 at chr16:3088890-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

ZSCAN10 at chr16:3088890-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090232-3099317
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

ZSCAN10 at chr16:3088890-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090552-3099261

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

ZSCAN10 at chr16:3088890-3092860
ZSCAN10 at chr16:3088894-3099292
ZSCAN10 at chr16:3088989-3099295
ZSCAN10 at chr16:3090232-3093236
ZSCAN10 at chr16:3090232-3099317
ZSCAN10 at chr16:3090234-3099228
ZSCAN10 at chr16:3090552-3099261
ZSCAN10 at chr16:3092229-3099294
ZSCAN10 at chr16:3092451-3099270
ZSCAN10 at chr16:3096450-3099292

International Knockout Mouse Consortium Genes Mapped to Human Genome

Zscan10_35643 at chr16:3088894-3092860
Zscan10_VG18464 at chr16:3088894-3092860

BC114452 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2079  100.0%         16     -   3088989   3092839  BC114452     1  2079  2079

Non-Human Aligned mRNA Search Results

BC145638 - Mus musculus zinc finger and SCAN domain containing 10, mRNA (cDNA clone MGC:179222 IMAGE:9054214), complete cds.
BC166021 - Synthetic construct Mus musculus clone IMAGE:100066321, MGC:195458 zinc finger and SCAN domain containing 10 (Zscan10) mRNA, encodes complete protein.