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UCSC Genes

VPS54 (uc002scq.3) at chr2:64119667-64246214 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae) (VPS54), transcript variant 1, mRNA.
VPS54 (uc010fct.3) at chr2:64119667-64202733 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae) (VPS54), transcript variant 2, mRNA.
VPS54 (uc002scp.3) at chr2:64119667-64246214 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae) (VPS54), transcript variant 2, mRNA.
VPS54 (uc002sco.3) at chr2:64119667-64163855 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae) (VPS54), transcript variant 2, mRNA.
VPS54 (uc002scn.3) at chr2:64119667-64147129 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae) (VPS54), transcript variant 2, mRNA.
VPS53 (uc002frn.2) at chr17:435533-618096 - Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae) (VPS53), transcript variant 2, mRNA.
VPS51 (uc001ocr.2) at chr11:64863587-64879332 - Homo sapiens vacuolar protein sorting 51 homolog (S. cerevisiae) (VPS51), transcript variant 1, mRNA.
VPS51 (uc001ocs.2) at chr11:64874985-64879332 - Homo sapiens vacuolar protein sorting 51 homolog (S. cerevisiae) (VPS51), transcript variant 1, mRNA.
VPS52 (uc003odm.1) at chr6:33218049-33239662 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011fql.2) at chr6_cox_hap2:4661875-4683472 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011gmq.2) at chr6_dbb_hap3:4499369-4520984 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011icm.2) at chr6_mcf_hap5:4691839-4713432 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011izy.2) at chr6_qbl_hap6:4450268-4471898 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011juq.2) at chr6_ssto_hap7:4698274-4719864 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc003odn.1) at chr6:33218049-33239739 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011fqm.2) at chr6_cox_hap2:4661875-4683549 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011gmr.2) at chr6_dbb_hap3:4499369-4521061 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011icn.2) at chr6_mcf_hap5:4691839-4713509 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011izz.2) at chr6_qbl_hap6:4450268-4471975 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.
VPS52 (uc011jur.2) at chr6_ssto_hap7:4698274-4719941 - Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_016516.2 at chr2:64119667-64246214
NM_001005739.1 at chr2:64119667-64246214

RefSeq Genes

VPS54 at chr2:64119284-64246562 - (NM_001005739) vacuolar protein sorting-associated protein 54 isoform 2
VPS54 at chr2:64119284-64246562 - (NM_016516) vacuolar protein sorting-associated protein 54 isoform 1

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

VPS54, GARP complex subunit, transcript variant 2 at chr2:64119667-64246214 - (NM_001005739.1)
VPS54, GARP complex subunit, transcript variant 1 at chr2:64119667-64246214 - (NM_016516.2)

Non-Human RefSeq Genes

Vps54 at chr2:64119311-64211153 - (NM_173147) vacuolar protein sorting-associated protein 54
Vps54 at chr2:64119311-64246359 - (NM_139061) vacuolar protein sorting-associated protein 54 isoform 1
Vps54 at chr2:64119311-64246359 - (NM_001290628) vacuolar protein sorting-associated protein 54 isoform 2
VPS54 at chr2:64120140-64246160 - (NM_001261018) vacuolar protein sorting-associated protein 54
VPS54 at chr2:64120035-64211156 - (NM_001105460) vacuolar protein sorting-associated protein 54
vps54 at chr2:64120564-64211052 - (NM_001130776) vacuolar protein sorting-associated protein 54

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64119284-64246562
VPS54 at chr2:64120035-64202736

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64119284-64246562
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64119284-64246562
VPS54 at chr2:64120035-64202736

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64119284-64246562
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from GENCODE Version 19

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206

Comprehensive Gene Annotation Set from GENCODE Version 19

VPS54 at chr2:64119280-64246206
VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120306-64246567

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064
VPS54 at chr2:64120306-64246567

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120306-64246567
VPS54 at chr2:64120496-64246214

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

VPS54 at chr2:64120035-64202736
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120190-64246206
VPS54 at chr2:64120206-64147064
VPS54 at chr2:64120306-64246567
VPS54 at chr2:64120496-64246214

International Knockout Mouse Consortium Genes Mapped to Human Genome

Vps54_34078 at chr2:64119667-64246214
Vps54_34079 at chr2:64119667-64246214

Human Aligned mRNA Search Results

BC041868 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae), mRNA (cDNA clone MGC:43704 IMAGE:5271464), complete cds.
AY444798 - Homo sapiens vacuolar sorting protein 54 long isoform (VPS54) mRNA, complete cds, alternatively spliced.
BC030275 - Homo sapiens vacuolar protein sorting 54 homolog (S. cerevisiae), mRNA (cDNA clone MGC:39932 IMAGE:3917367), complete cds.
AK292889 - Homo sapiens cDNA FLJ78648 complete cds, highly similar to Homo sapiens vacuolar protein sorting 54 (yeast) (VPS54), transcript variant 2, mRNA.
AK292669 - Homo sapiens cDNA FLJ77625 complete cds, highly similar to Homo sapiens vacuolar protein sorting 54 (VPS54), transcript variant 1, mRNA.
AK094019 - Homo sapiens cDNA FLJ36700 fis, clone UTERU2009131, highly similar to Rattus norvegicus mRNA for Vps54-like protein.

Non-Human Aligned mRNA Search Results

BC023474 - Mus musculus vacuolar protein sorting 54 (yeast), mRNA (cDNA clone IMAGE:5007221), complete cds.
BC024789 - Mus musculus vacuolar protein sorting 54 (yeast), mRNA (cDNA clone IMAGE:5355245), partial cds.
BC025012 - Mus musculus vacuolar protein sorting 54 (yeast), mRNA (cDNA clone MGC:32446 IMAGE:5042879), complete cds.
AJ010392 - Rattus norvegicus mRNA for Vps54-like protein.
BC134641 - Bos taurus vacuolar protein sorting 54 homolog (S. cerevisiae), mRNA (cDNA clone MGC:151871 IMAGE:8475426), complete cds.
DQ148161 - Macaca mulatta clone sl1_j23_t7_376 vacuolar protein sorting 54 (VPS54) mRNA, 3' UTR.
DQ148215 - Macaca mulatta clone sl1_c02_t7_446 vacuolar protein sorting 54 (VPS54) mRNA, 3' UTR.
DQ148219 - Macaca mulatta clone sl1_e17_t7_452 vacuolar protein sorting 54 (VPS54) mRNA, 3' UTR.
JT407166 - TSA: Ictalurus punctatus clc_267687 mRNA sequence.
JU334922 - TSA: Macaca mulatta Mamu_519244 mRNA sequence.
JU334923 - TSA: Macaca mulatta Mamu_519245 mRNA sequence.
JU473167 - TSA: Macaca mulatta Mamu_383435 mRNA sequence.
JU473168 - TSA: Macaca mulatta Mamu_383436 mRNA sequence.
JV044323 - TSA: Macaca mulatta Mamu_416070 mRNA sequence.
JV044324 - TSA: Macaca mulatta Mamu_416071 mRNA sequence.
AK036667 - Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830147K10 product:similar to VPS54L-LIKE PROTEIN [Rattus norvegicus], full insert sequence.

Ensembl Genes

VPS54 at chr2:64120190-64246206 - (ENST00000272322)
VPS54 at chr2:64119280-64246206 - (ENST00000409558)
VPS54 at chr2:64120035-64202736 - (ENST00000354504)
VPS54 at chr2:64120206-64147064 - (ENST00000416400)

Vega Protein-Coding Annotations

OTTHUMT00000327064 at chr2:64120035-64202736
OTTHUMT00000327063 at chr2:64120190-64246206
OTTHUMT00000327062 at chr2:64120190-64246206
OTTHUMT00000327065 at chr2:64120206-64147064
OTTHUMT00000327066 at chr2:64160923-64169553

Pfam Domains in UCSC Genes

Vps54 at chr2:64139506-64144053