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UCSC Genes

VAPA (uc002koj.3) at chr18:9913955-9960018 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa (VAPA), transcript variant 1, mRNA.
VAPA (uc002kok.3) at chr18:9913955-9960018 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa (VAPA), transcript variant 2, mRNA.
VAPB (uc002xzd.2) at chr20:56964175-57026156 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 2, mRNA.
VAPB (uc010zzo.2) at chr20:56964175-57026156 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA.
VAPB (uc002xza.3) at chr20:56964175-57026156 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 1, mRNA.
VAMP1 (uc001qok.3) at chr12:6571404-6579843 - Homo sapiens vesicle-associated membrane protein 1 (synaptobrevin 1) (VAMP1), transcript variant 1, mRNA.
OSBPL1A (uc010xbc.2) at chr18:21742011-21891470 - Homo sapiens oxysterol binding protein-like 1A (OSBPL1A), transcript variant 3, mRNA.
OSBPL1A (uc002kve.3) at chr18:21742011-21977833 - Homo sapiens oxysterol binding protein-like 1A (OSBPL1A), transcript variant 2, mRNA.
CERT1 (uc011csu.2) at chr5:74666928-74807454 - Homo sapiens collagen, type IV, alpha 3 (Goodpasture antigen) binding protein (CERT1), transcript variant 1, mRNA.
CERT1 (uc003kdu.2) at chr5:74675065-74807454 - Homo sapiens collagen, type IV, alpha 3 (Goodpasture antigen) binding protein (CERT1), transcript variant 1, mRNA.
OCLN (uc003jwu.3) at chr5:68788119-68853931 - Homo sapiens occludin (OCLN), transcript variant 1, mRNA.
OCLN (uc021xzq.1) at chr5:68800004-68853931 - Homo sapiens occludin (OCLN), transcript variant 3, mRNA.
OCLN (uc003jwv.4) at chr5:68788590-68853931 - Homo sapiens occludin (OCLN), transcript variant 2, mRNA.
OCLN (uc021xzs.1) at chr5:68800004-68853931 - Homo sapiens occludin (OCLN), transcript variant 2, mRNA.
ZFYVE27 (uc001kol.2) at chr10:99496878-99520664 - Homo sapiens zinc finger, FYVE domain containing 27 (ZFYVE27), transcript variant 2, mRNA.
OSBP (uc001noc.1) at chr11:59341871-59383617 - Homo sapiens oxysterol binding protein (OSBP), mRNA.
STX1A (uc003tyx.3) at chr7:73113535-73134017 - Homo sapiens syntaxin 1A (brain) (STX1A), transcript variant 1, mRNA.
VAMP2 (uc010cnt.1) at chr17:8062465-8066293 - Homo sapiens vesicle-associated membrane protein 2 (synaptobrevin 2) (VAMP2), mRNA.
RSAD2 (uc002qyp.1) at chr2:7017796-7038363 - Homo sapiens radical S-adenosyl methionine domain containing 2 (RSAD2), mRNA.
EGFR (uc003tqk.3) at chr7:55086725-55275031 - Homo sapiens epidermal growth factor receptor (EGFR), transcript variant 1, mRNA.
EGFR (uc011kco.2) at chr7:55177540-55275031 - Homo sapiens epidermal growth factor receptor (EGFR), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_194434.3 at chr18:9914013-9960018
NM_003574.6 at chr18:9914013-9960018

RefSeq Genes

VAPA at chr18:9914013-9960018 - (NM_194434) vesicle-associated membrane protein-associated protein A isoform 2
VAPA at chr18:9914013-9960018 - (NM_003574) vesicle-associated membrane protein-associated protein A isoform 1

Non-Human RefSeq Genes

VAPA at chr18:9914064-9954743 - (NM_001283801) vesicle-associated membrane protein-associated protein A
VAPA at chr18:9914023-9954824 - (NM_001280235) vesicle-associated membrane protein-associated protein A
vapa at chr18:9931794-9954211 - (NM_001011333) vesicle-associated membrane protein-associated protein A
vapa at chr15:89743990-89745006 - (NM_001200434) vesicle-associated membrane protein-associated protein A
vapa at chr20:56993266-57016139 - (NM_001200434) vesicle-associated membrane protein-associated protein A
vapa at chr18:9931794-9954208 - (NM_001160650) VAMP (vesicle-associated membrane protein)-associated protein A
VAPA at chr18:9913985-9956727 - (NM_001133171) vesicle-associated membrane protein-associated protein A
Vapa at chr18:9914003-9954823 - (NM_001355402) vesicle-associated membrane protein-associated protein A isoform 1
vapa at chr18:9931794-9954786 - (NM_001304116) vesicle-associated membrane protein-associated protein A
Vapa at chr18:9914023-9954822 - (NM_031631) vesicle-associated membrane protein-associated protein A
VAPA at chr18:9914180-9954821 - (NM_001075733) vesicle-associated membrane protein-associated protein A
Vapa at chr18:9914003-9954824 - (NM_013933) vesicle-associated membrane protein-associated protein A isoform 2
vapal at chr20:56993266-57014078 - (NM_001002546) VAMP (vesicle-associated membrane protein)-associated protein A, like

Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914059-9954355

Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

VAPA at chr18:9914013-9960018
VAPA at chr18:9914049-9936586
VAPA at chr18:9914059-9954355
VAPA at chr18:9914060-9936154
VAPA at chr18:9914610-9925071
VAPA at chr18:9915767-9954140
VAPA at chr18:9931774-9954223
VAPA at chr18:9936724-9954474
VAPA at chr18:9947591-9951350

Retroposed Genes V5, Including Pseudogenes

VAPA at chrX:94708328-94708600 - (AF057358.1-4)
VAPA at chrX:94708328-94708600 - (AF057358.1-4)
VAPA at chr15:89743731-89745091 - (NM_003574.5-7)
VAPA at chr15:89743731-89745091 - (NM_003574.5-7)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Vapa_71908 at chr18:9913955-9960018
Vapa_78828 at chr18:9913955-9960018
Vapa_VG14922 at chr18:9913955-9960018

BC002992 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1578  100.0%         18     +   9914041   9954823  BC002992     1  1578  1609

Non-Human Aligned mRNA Search Results

BC061951 - Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A, mRNA (cDNA clone MGC:65776 IMAGE:6789256), complete cds.
BC076262 - Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A, like, mRNA (cDNA clone MGC:92788 IMAGE:7088006), complete cds.
BC154767 - Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A, like, mRNA (cDNA clone MGC:174749 IMAGE:7136576), complete cds.
BC155814 - Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A, like, mRNA (cDNA clone MGC:175026 IMAGE:7069775), complete cds.
CR761106 - Xenopus tropicalis finished cDNA, clone TEgg046c12.
BC003866 - Mus musculus vesicle-associated membrane protein, associated protein A, mRNA (cDNA clone MGC:6617 IMAGE:3490082), complete cds.
BC061875 - Rattus norvegicus VAMP (vesicle-associated membrane protein)-associated protein A, mRNA (cDNA clone MGC:72396 IMAGE:5598274), complete cds.
BC119937 - Bos taurus VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa, mRNA (cDNA clone MGC:140014 IMAGE:8286168), complete cds.
AY888207 - Synthetic construct Homo sapiens clone FLH010394.01X VAMP-associated protein A (VAPA) mRNA, complete cds.
AY888208 - Synthetic construct Homo sapiens clone FLH010395.01X VAMP-associated protein A (VAPA) mRNA, complete cds.
AY890791 - Synthetic construct Homo sapiens clone FLH010390.01L VAMP-associated protein A (VAPA) mRNA, partial cds.
AY890792 - Synthetic construct Homo sapiens clone FLH010391.01L VAMP-associated protein A (VAPA) mRNA, partial cds.
JU321048 - TSA: Macaca mulatta Mamu_501690 mRNA sequence.
JU321858 - TSA: Macaca mulatta Mamu_501692 mRNA sequence.
JU321859 - TSA: Macaca mulatta Mamu_501694 mRNA sequence.
JU324241 - TSA: Macaca mulatta Mamu_501691 mRNA sequence.
JU326120 - TSA: Macaca mulatta Mamu_501689 mRNA sequence.
JU472031 - TSA: Macaca mulatta Mamu_373107 mRNA sequence.
JV043372 - TSA: Macaca mulatta Mamu_405237 mRNA sequence.
JV043373 - TSA: Macaca mulatta Mamu_405240 mRNA sequence.
JV043374 - TSA: Macaca mulatta Mamu_405242 mRNA sequence.
GU588169 - Ictalurus furcatus clone CBZF11070 vesicle-associated membrane protein-associated protein a (VAPA) mRNA, complete cds.
GU588592 - Ictalurus punctatus clone CBPO10500 vesicle-associated membrane protein-associated protein a (VAPA) mRNA, complete cds.
BT049882 - Salmo salar clone ssal-eve-515-066 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT056934 - Salmo salar clone ssal-rgb2-625-263 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT073519 - Oncorhynchus mykiss clone omyk-evn-504-033 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT073587 - Oncorhynchus mykiss clone omyk-evn-510-055 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT075433 - Osmerus mordax clone omor-rgc-503-199 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT079679 - Esox lucius clone eluc-evq-521-290 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.
BT083114 - Anoplopoma fimbria clone afim-evh-529-200 Vesicle-associated membrane protein-associated protein A putative mRNA, complete cds.

Ensembl Genes

VAPA at chr18:9936724-9954474 - (ENST00000583475)
VAPA at chr18:9915767-9954140 - (ENST00000584796)
VAPA at chr18:9914060-9936154 - (ENST00000585042)
VAPA at chr18:9914049-9936586 - (ENST00000577901)
VAPA at chr18:9913999-9960018 - (ENST00000400000)
VAPA at chr18:9914059-9954355 - (ENST00000340541)
VAPA at chr18:9914610-9925071 - (ENST00000578314)
VAPA at chr18:9931774-9954223 - (ENST00000583879)
VAPA at chr18:9947591-9951350 - (ENST00000577539)

Vega Protein-Coding Annotations

OTTHUMT00000254490 at chr18:9913999-9960018
OTTHUMT00000254489 at chr18:9913999-9954797

HUGO Gene Nomenclature

VAPA at chr18:9914014-9960018

gnomAD Loss of Function Metrics by Gene

VAPA at chr18:9914059-9954355

gnomAD Loss of Function Metrics by Transcript

ENST00000340541 at chr18:9914059-9954355
ENST00000400000 at chr18:9913999-9960018