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UCSC Genes

UPF3A (uc001vuu.3) at chr13:115051777-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
UPF3A (uc001vup.3) at chr13:115047059-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
UPF3A (uc010tkn.2) at chr13:115047059-115049204 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 2, mRNA.
UPF3A (uc001vut.3) at chr13:115051456-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
UPF3A (uc001vur.3) at chr13:115047059-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
UPF3A (uc001vuq.3) at chr13:115047059-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 2, mRNA.
IFITM2 (uc001lox.4) at chr11:308107-309410 - Homo sapiens interferon induced transmembrane protein 2 (IFITM2), mRNA.
SMG5 (uc001foc.4) at chr1:156219015-156252620 - Homo sapiens smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG5), mRNA.
SMG7 (uc001gqg.3) at chr1:183441506-183523328 - Homo sapiens smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG7), transcript variant 1, mRNA.
UPF2 (uc001ilb.3) at chr10:11962021-12084840 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
UPF2 (uc001ilc.3) at chr10:11962021-12085169 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 1, mRNA.
UPF2 (uc009xiz.2) at chr10:11993896-12084840 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
UPF2 (uc001ila.3) at chr10:11962021-12077896 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
NXF1 (uc001nvf.1) at chr11:62559598-62572964 - Homo sapiens nuclear RNA export factor 1 (NXF1), transcript variant 1, mRNA.
RNPS1 (uc002cpu.3) at chr16:2303100-2317858 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 1, mRNA.
RNPS1 (uc002cpw.3) at chr16:2303100-2318413 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 2, mRNA.
RNPS1 (uc002cpt.3) at chr16:2303100-2317604 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 1, mRNA.
UPF1 (uc002nkg.3) at chr19:18942744-18979039 - Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast) (UPF1), mRNA.
RBM8A (uc001ent.2) at chr1:145507557-145513535 - Homo sapiens RNA binding motif protein 8A (RBM8A), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_080687.2 at chr13:115047059-115071292
NM_023011.3 at chr13:115047059-115071292

RefSeq Genes

UPF3A at chr13:115047386-115071291 - (NM_001353645) regulator of nonsense transcripts 3A isoform c
UPF3A at chr13:115047076-115053260 - (NM_001353652) regulator of nonsense transcripts 3A isoform f
UPF3A at chr13:115047386-115071291 - (NM_001353647) regulator of nonsense transcripts 3A isoform c
UPF3A at chr13:115047076-115071291 - (NM_001353644) regulator of nonsense transcripts 3A isoform c
UPF3A at chr13:115047386-115071291 - (NM_001353650) regulator of nonsense transcripts 3A isoform d
UPF3A at chr13:115047076-115071291 - (NM_080687) regulator of nonsense transcripts 3A isoform hUpf3pdelta
UPF3A at chr13:115047076-115053260 - (NM_001353651) regulator of nonsense transcripts 3A isoform e
UPF3A at chr13:115047076-115071291 - (NM_023011) regulator of nonsense transcripts 3A isoform hUpf3p
UPF3A at chr13:115047386-115071291 - (NM_001353646) regulator of nonsense transcripts 3A isoform c
UPF3A at chr13:115047870-115071291 - (NM_001353648) regulator of nonsense transcripts 3A isoform c
UPF3A at chr13:115047386-115071291 - (NM_001353649) regulator of nonsense transcripts 3A isoform d
UPF3A at chr13:115047076-115053260 - (NR_148483) 
UPF3A at chr13:115047076-115071291 - (NR_148484) 
UPF3A at chr13:115047386-115071291 - (NR_148495) 
UPF3A at chr13:115047386-115071291 - (NR_148488) 
UPF3A at chr13:115047076-115071291 - (NR_148485) 
UPF3A at chr13:115047386-115071291 - (NR_148496) 
UPF3A at chr13:115047386-115071291 - (NR_148494) 
UPF3A at chr13:115047386-115071291 - (NR_148492) 
UPF3A at chr13:115047386-115071291 - (NR_148493) 
UPF3A at chr13:115047386-115071291 - (NR_148491) 
UPF3A at chr13:115047386-115071291 - (NR_148487) 
UPF3A at chr13:115047386-115071291 - (NR_148490) 
UPF3A at chr13:115047386-115071291 - (NR_148486) 
UPF3A at chr13:115047076-115071291 - (NR_148482) 
UPF3A at chr13:115047386-115071291 - (NR_148489) 

Non-Human RefSeq Genes

Upf3a at chr13:115047112-115067389 - (NM_001012159) regulator of nonsense transcripts 3A
Upf3a at chr13:115047112-115067398 - (NM_025924) regulator of nonsense transcripts 3A
UPF3A at chr13:115047112-115071279 - (NM_001285305) regulator of nonsense transcripts 3A
upf3a at chr13:115047496-115057019 - (NM_001202448) regulator of nonsense transcripts 3A

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

UPF3A at chr13:115047076-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

UPF3A at chr13:115047076-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047112-115049204
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115050552-115053092
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047112-115049204
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115050552-115053092
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047112-115049204
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115050552-115053092
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

UPF3A at chr13:115047059-115071292
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047112-115049204
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115050552-115053092
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from GENCODE Version 19

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115051860-115071283

Comprehensive Gene Annotation Set from GENCODE Version 19

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115051860-115071283

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115051860-115071283

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047123-115070634
UPF3A at chr13:115051860-115071283

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

UPF3A at chr13:115047059-115071283
UPF3A at chr13:115047078-115047745
UPF3A at chr13:115047103-115071283
UPF3A at chr13:115047120-115057232
UPF3A at chr13:115047123-115070634
UPF3A at chr13:115047195-115070424
UPF3A at chr13:115047400-115067267
UPF3A at chr13:115047428-115067231
UPF3A at chr13:115051450-115057193
UPF3A at chr13:115051849-115057219
UPF3A at chr13:115051860-115071283

Retroposed Genes V5, Including Pseudogenes

UPF3A at chr9:102759680-102761374 - (NM_023011.3-6)
UPF3A at chr17:16648054-16650099 - (NM_023011.3-3)
UPF3A at chr17:20278129-20280151 - (NM_023011.3-4)
UPF3A at chr17:16648054-16650099 - (NM_023011.3-3)
UPF3A at chr9:102759680-102761374 - (NM_023011.3-6)
UPF3A at chr17:20278129-20280151 - (NM_023011.3-4)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Upf3a_34557 at chr13:115047078-115071283
Upf3a_79784 at chr13:115047078-115071283

Human Aligned mRNA Search Results

BC008694 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone IMAGE:3866772), complete cds.
BC023569 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone MGC:20683 IMAGE:4127465), complete cds.

Human Unaligned mRNA Search Results

NR_148483 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 13, non-coding RNA.
NR_148484 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 14, non-coding RNA.
NR_148495 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 25, non-coding RNA.
NR_148488 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 18, non-coding RNA.
NR_148485 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 15, non-coding RNA.
NR_148496 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 26, non-coding RNA.
NR_148494 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 24, non-coding RNA.
NR_148492 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 22, non-coding RNA.
NR_148493 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 23, non-coding RNA.
NR_148491 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 21, non-coding RNA.
NR_148487 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 17, non-coding RNA.
NR_148490 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 20, non-coding RNA.
NR_148486 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 16, non-coding RNA.
NR_148482 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 12, non-coding RNA.
NR_148489 - Homo sapiens UPF3A regulator of nonsense mediated mRNA decay (UPF3A), transcript variant 19, non-coding RNA.

Non-Human Aligned mRNA Search Results

BC095761 - Danio rerio UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone IMAGE:7276220), partial cds.
FM986819 - Danio rerio mRNA for UPF3 regulator of nonsense transcripts homolog A (yeast) (upf3a gene).
BC088463 - Rattus norvegicus UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone MGC:95118 IMAGE:7127783), complete cds.
BC116988 - Mus musculus UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone MGC:151365 IMAGE:40126307), complete cds.
BC119035 - Mus musculus UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone MGC:155351 IMAGE:8733784), complete cds.
JU323887 - TSA: Macaca mulatta Mamu_522073 mRNA sequence.
JU323963 - TSA: Macaca mulatta Mamu_522072 mRNA sequence.
JU325071 - TSA: Macaca mulatta Mamu_511402 mRNA sequence.
AB179244 - Macaca fascicularis testis cDNA clone: QtsA-15960, similar to human UPF3 regulator of nonsense transcripts homolog A (yeast)(UPF3A), transcript variant 1, mRNA, RefSeq: NM_023011.2.
AB168518 - Macaca fascicularis testis cDNA clone: QtsA-12723, similar to human UPF3 regulator of nonsense transcripts homolog A (yeast)(UPF3A), transcript variant 1, mRNA, RefSeq: NM_023011.2.

Ensembl Genes

UPF3AP2 at chr17:20279022-20280153 - (ENST00000457924)
UPF3AP2 at chr17:20278682-20279706 - (ENST00000578315)
UPF3AP1 at chr17:16648945-16649400 - (ENST00000441471)
UPF3A at chr13:115051849-115057219 - (ENST00000479712)
UPF3A at chr13:115047428-115067231 - (ENST00000493727)
UPF3A at chr13:115047195-115070424 - (ENST00000480362)
UPF3A at chr13:115047103-115071283 - (ENST00000351487)
UPF3A at chr13:115047059-115071283 - (ENST00000375299)
UPF3A at chr13:115047078-115047745 - (ENST00000492270)
UPF3A at chr13:115047120-115057232 - (ENST00000484246)
UPF3A at chr13:115047400-115067267 - (ENST00000474056)
UPF3A at chr13:115051450-115057193 - (ENST00000481131)
UPF3A at chr13:115051860-115071283 - (ENST00000475218)
UPF3AP1 at chr17:16648950-16650075 - (ENST00000413731)
UPF3AP2 at chr17:20279020-20279851 - (ENST00000375294)
UPF3AP3 at chr9:102760583-102761351 - (ENST00000420996)

Vega Protein-Coding Annotations

OTTHUMT00000045968 at chr13:115047059-115071283
OTTHUMT00000045973 at chr13:115047078-115047745
OTTHUMT00000276760 at chr13:115047103-115071283
OTTHUMT00000045972 at chr13:115047120-115057232
OTTHUMT00000045970 at chr13:115047195-115070424
OTTHUMT00000045974 at chr13:115047400-115067267
OTTHUMT00000045971 at chr13:115047428-115067231
OTTHUMT00000045975 at chr13:115051450-115057193
OTTHUMT00000045976 at chr13:115051849-115057219
OTTHUMT00000045969 at chr13:115051860-115071283