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UCSC Genes

UPF2 (uc001ilb.3) at chr10:11962021-12084840 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
UPF2 (uc009xiz.2) at chr10:11993896-12084840 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
UPF2 (uc001ilc.3) at chr10:11962021-12085169 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 1, mRNA.
UPF2 (uc001ila.3) at chr10:11962021-12077896 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
MAGOHB (uc001qyq.2) at chr12:10756364-10766208 - Homo sapiens mago-nashi homolog B (Drosophila) (MAGOHB), mRNA.
NOB1 (uc002exs.4) at chr16:69775757-69788871 - Homo sapiens NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) (NOB1), transcript variant 1, mRNA.
NOB1 (uc031qwt.1) at chr16:69775757-69788871 - Homo sapiens NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) (NOB1), transcript variant 2, non-coding RNA.
SENP3-EIF4A1 (uc002gho.2) at chr17:7465309-7482324 - Homo sapiens SENP3-EIF4A1 readthrough (SENP3-EIF4A1), non-coding RNA.
EIF3E (uc003ymu.3) at chr8:109213972-109260959 - Homo sapiens eukaryotic translation initiation factor 3, subunit E (EIF3E), mRNA.
EIF3E (uc003ymt.3) at chr8:109213972-109255062 - Homo sapiens eukaryotic translation initiation factor 3, subunit E (EIF3E), mRNA.
RPS25 (uc001pun.2) at chr11:118886422-118889057 - Homo sapiens ribosomal protein S25 (RPS25), mRNA.
RPS15 (uc002lsp.1) at chr19:1438363-1440492 - Homo sapiens ribosomal protein S15 (RPS15), mRNA.
XRN1 (uc003eut.3) at chr3:142025449-142166853 - Homo sapiens 5'-3' exoribonuclease 1 (XRN1), transcript variant 2, mRNA.
UPF3B (uc004erz.2) at chrX:118967989-118986991 - Homo sapiens UPF3 regulator of nonsense transcripts homolog B (yeast) (UPF3B), transcript variant 1, mRNA.
DCP2 (uc003kqh.3) at chr5:112312407-112357892 - Homo sapiens decapping mRNA 2 (DCP2), transcript variant 1, mRNA.
UPF3A (uc001vup.3) at chr13:115047059-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
UPF3A (uc001vut.3) at chr13:115051456-115071291 - Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA.
XRN1 (uc003eus.3) at chr3:142025449-142166853 - Homo sapiens 5'-3' exoribonuclease 1 (XRN1), transcript variant 1, mRNA.
SMG1 (uc002dfm.3) at chr16:18816175-18937726 - Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) (SMG1), mRNA.
SMG1 (uc010bwb.3) at chr16:18816175-18908278 - Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) (SMG1), mRNA.
SMG1 (uc010bwa.3) at chr16:18816175-18872098 - Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) (SMG1), mRNA.
RNPS1 (uc002cpu.3) at chr16:2303100-2317858 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 1, mRNA.
RNPS1 (uc002cpw.3) at chr16:2303100-2318413 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 2, mRNA.
RNPS1 (uc002cpt.3) at chr16:2303100-2317604 - Homo sapiens RNA binding protein S1, serine-rich domain (RNPS1), transcript variant 1, mRNA.
NXF1 (uc001nvf.1) at chr11:62559598-62572964 - Homo sapiens nuclear RNA export factor 1 (NXF1), transcript variant 1, mRNA.
EIF3B (uc003sly.3) at chr7:2394474-2420377 - Homo sapiens eukaryotic translation initiation factor 3, subunit B (EIF3B), transcript variant 2, mRNA.
EIF3B (uc003slx.3) at chr7:2394474-2420377 - Homo sapiens eukaryotic translation initiation factor 3, subunit B (EIF3B), transcript variant 1, mRNA.
EIF3B (uc003sma.3) at chr7:2400345-2420377 - Homo sapiens eukaryotic translation initiation factor 3, subunit B (EIF3B), transcript variant 1, mRNA.
SMG6 (uc002fub.1) at chr17:1963133-2207069 - Homo sapiens smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG6), transcript variant 1, mRNA.
NCBP2 (uc003fxd.1) at chr3:196662273-196669464 - Homo sapiens nuclear cap binding protein subunit 2, 20kDa (NCBP2), transcript variant 1, mRNA.
NCBP2 (uc003fxb.1) at chr3:196662273-196669248 - Homo sapiens nuclear cap binding protein subunit 2, 20kDa (NCBP2), transcript variant 1, mRNA.
MAGOH (uc001cvf.2) at chr1:53692564-53704282 - Homo sapiens mago-nashi homolog, proliferation-associated (Drosophila) (MAGOH), mRNA.
NCBP1 (uc004axq.3) at chr9:100395705-100436029 - Homo sapiens nuclear cap binding protein subunit 1, 80kDa (NCBP1), mRNA.
RBM8A (uc001ent.2) at chr1:145507557-145513535 - Homo sapiens RNA binding motif protein 8A (RBM8A), mRNA.
UPF1 (uc002nkf.3) at chr19:18942744-18979039 - Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast) (UPF1), mRNA.
UPF1 (uc002nkh.3) at chr19:18970191-18979039 - Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast) (UPF1), mRNA.
UPF1 (uc002nkg.3) at chr19:18942744-18979039 - Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast) (UPF1), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_015542.3 at chr10:11962021-12084840
NM_080599.2 at chr10:11962021-12085169

RefSeq Genes

UPF2 at chr10:11962021-12085169 - (NM_080599) regulator of nonsense transcripts 2
UPF2 at chr10:11962021-12084808 - (NM_015542) regulator of nonsense transcripts 2

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

UPF2 regulator of nonsense transcripts homolog (yeast), transcript variant 2 at chr10:11962021-12084840 - (NM_015542.3)
UPF2 regulator of nonsense transcripts homolog (yeast), transcript variant 1 at chr10:11962021-12085169 - (NM_080599.2)

Non-Human RefSeq Genes

upf2 at chr10:11971863-12077425 - (NM_001128003) regulator of nonsense transcripts 2
Upf2 at chr10:11962014-12084828 - (NM_001081132) regulator of nonsense transcripts 2
Upf2 at chr10:11962784-12084861 - (NM_001108421) regulator of nonsense transcripts 2
upf2.S at chr10:11971863-12077425 - (NM_001096192) UPF2, regulator of nonsense mediated mRNA decay S homeolog

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084808
UPF2 at chr10:11962022-12085169

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084808
UPF2 at chr10:11962022-12085169
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085169
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from GENCODE Version 19

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Comprehensive Gene Annotation Set from GENCODE Version 19

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:12077058-12085169

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:11963023-12077422
UPF2 at chr10:11973666-12041937
UPF2 at chr10:12077058-12085169

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

UPF2 at chr10:11962021-12077896
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962021-12084833
UPF2 at chr10:11962022-12085023
UPF2 at chr10:11963023-12077422
UPF2 at chr10:11973666-12041937
UPF2 at chr10:12077058-12085169

International Knockout Mouse Consortium Genes Mapped to Human Genome

Upf2_71723 at chr10:11962021-12085023
Upf2_VG19580 at chr10:11962021-12085023

Human Aligned mRNA Search Results

BC114964 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone MGC:138835 IMAGE:40082739), complete cds.
BC115737 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone MGC:138834 IMAGE:40082728), complete cds.
AF318574 - Homo sapiens UPF2 (UPF2) mRNA, complete cds.
BC090919 - Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone IMAGE:30371337), partial cds.
KY966272 - Homo sapiens cell line 95T1000 LEMD3/UPF2 fusion mRNA, partial sequence.
KY966261 - Homo sapiens cell line 95T1000 FRS2/UPF2/LEMD3 fusion mRNA, partial sequence.

Non-Human Aligned mRNA Search Results

KA645880 - TSA: Musca domestica ALHF_02952.g1772 mRNA sequence.
JP020714 - TSA: Mustela putorius furo MPF81018059contig1/2 mRNA sequence.
JP020715 - TSA: Mustela putorius furo MPF81018060contig2/2 mRNA sequence.
BC049622 - Mus musculus UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone IMAGE:6531961), partial cds.
BC138358 - Mus musculus UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone MGC:169983 IMAGE:8861378), complete cds.
BC138359 - Mus musculus UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone MGC:169984 IMAGE:8861379), complete cds.
FM986818 - Danio rerio partial mRNA for UPF2 regulator of nonsense transcripts homolog (yeast) (upf2 gene).
BC126821 - Bos taurus UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone IMAGE:8266825), partial cds.
JT405571 - TSA: Ictalurus punctatus clc_263712 mRNA sequence.
JU323730 - TSA: Macaca mulatta Mamu_537109 mRNA sequence.
JU327931 - TSA: Macaca mulatta Mamu_532043 mRNA sequence.
JU475092 - TSA: Macaca mulatta Mamu_369320 mRNA sequence.
JV043904 - TSA: Macaca mulatta Mamu_410380 mRNA sequence.
AB171567 - Macaca fascicularis brain cDNA clone: QflA-12803, similar to human UPF2 regulator of nonsense transcripts homolog (yeast)(UPF2), transcript variant 2, mRNA, RefSeq: NM_015542.2.
AB049839 - Macaca fascicularis brain cDNA, clone:QnpA-16595, similar to human UPF2 regulator of nonsense transcripts homolog, mRNA, NM_015542.2.
BC039278 - Mus musculus UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone IMAGE:4973397), containing frame-shift errors.

Ensembl Genes

UPF2 at chr10:11962022-12085023 - (ENST00000397053)
UPF2 at chr10:11962021-12084833 - (ENST00000357604)
UPF2 at chr10:11962021-12077896 - (ENST00000356352)
UPF2 at chr10:12077058-12085169 - (ENST00000460569)

Vega Protein-Coding Annotations

OTTHUMT00000046785 at chr10:11962021-12084833
OTTHUMT00000046784 at chr10:11962021-12084833
OTTHUMT00000046783 at chr10:11962021-12077896
OTTHUMT00000046786 at chr10:12077058-12085169

Pfam Domains in UCSC Genes

Upf2 at chr10:11973674-11984762