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Gencode Genes

UFD1 (ENST00000263202.15) at chr22:19449911-19479193 - Homo sapiens ubiquitin recognition factor in ER associated degradation 1 (UFD1), transcript variant 1, mRNA. (from RefSeq NM_005659)
UFD1 (ENST00000494054.1) at chr22:19467873-19478931 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9J6N9)
UFD1 (ENST00000489406.1) at chr22:19467403-19479187 - ubiquitin recognition factor in ER associated degradation 1 (from HGNC UFD1)
UFD1 (ENST00000484101.5) at chr22:19465202-19479083 - ubiquitin recognition factor in ER associated degradation 1 (from HGNC UFD1)
UFD1 (ENST00000474226.1) at chr22:19467895-19479144 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9J7C8)
UFD1 (ENST00000466373.1) at chr22:19450625-19467716 - ubiquitin recognition factor in ER associated degradation 1 (from HGNC UFD1)
UFD1 (ENST00000459854.5) at chr22:19450621-19479172 - ubiquitin recognition factor in ER associated degradation 1 (from HGNC UFD1)
UFD1 (ENST00000447868.5) at chr22:19455680-19479202 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9JNP9)
UFD1 (ENST00000421968.6) at chr22:19456880-19479185 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9IZG3)
UFD1 (ENST00000399523.5) at chr22:19450621-19479172 - Homo sapiens ubiquitin recognition factor in ER associated degradation 1 (UFD1), transcript variant 2, mRNA. (from RefSeq NM_001035247)
USP13 (ENST00000496897.5) at chr3:179653693-179784406 - Deubiquitinase that mediates deubiquitination of target  proteins such as BECN1, MITF, SKP2 and USP10 and is involved in  various processes such as autophagy and endoplasmic reticulum-  associated degradation (ERAD). Component of a regulatory loop that  controls autophagy and p53/TP53 levels: mediates deubiquitination  of BECN1, a key regulator of autophagy, leading to stabilize the  PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an  essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-  containing complexes regulate USP13 stability, suggesting the  existence of a regulatory system by which PIK3C3/VPS34-containing  complexes regulate p53/TP53 protein levels via USP10 and USP13.  Recruited by nuclear UFD1 and mediates deubiquitination of SKP2,  thereby regulating endoplasmic reticulum-associated degradation  (ERAD). Mediates stabilization of SIAH2 independently of  deubiquitinase activity: binds ubiquitinated SIAH2 and acts by  impairing SIAH2 autoubiquitination. Has a weak deubiquitinase  activity in vitro and preferentially cleaves 'Lys-63'-linked  polyubiquitin chains. In contrast to USP5, it is not able to  mediate unanchored polyubiquitin disassembly. Able to cleave ISG15  in vitro; however, additional experiments are required to confirm  such data. (from UniProt Q92995)
USP13 (ENST00000263966.8) at chr3:179653040-179789401 - Homo sapiens ubiquitin specific peptidase 13 (USP13), mRNA. (from RefSeq NM_003940)
NPLOC4 (ENST00000374747.9) at chr17:81561766-81637060 - The ternary complex containing UFD1L, VCP and NPLOC4  binds ubiquitinated proteins and is necessary for the export of  misfolded proteins from the ER to the cytoplasm, where they are  degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates  spindle disassembly at the end of mitosis and is necessary for the  formation of a closed nuclear envelope (By similarity). (from UniProt Q8TAT6)
NPLOC4 (ENST00000331134.11) at chr17:81556887-81637112 - Homo sapiens NPL4 homolog, ubiquitin recognition factor (NPLOC4), transcript variant 1, mRNA. (from RefSeq NM_017921)
JKAMP (ENST00000616435.5) at chr14:59484517-59505410 - Homo sapiens JNK1/MAPK8 associated membrane protein (JKAMP), transcript variant 1, mRNA. (from RefSeq NM_016475)
JKAMP (ENST00000425728.6) at chr14:59484503-59504703 - Homo sapiens JNK1/MAPK8 associated membrane protein (JKAMP), transcript variant 2, mRNA. (from RefSeq NM_001098625)
JKAMP (ENST00000356057.9) at chr14:59484443-59505404 - Homo sapiens JNK1/MAPK8 associated membrane protein (JKAMP), transcript variant 4, mRNA. (from RefSeq NM_001284202)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_005659.6 at chr22:19449941-19479215
NM_001035247.2 at chr22:19449941-19479215

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011530361.2 at chr22:19450619-19479083

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

UFD1 at chr22:19449911-19479193

RefSeq Genes

UFD1 at chr22:19449911-19479193 - (NM_001362910) ubiquitin recognition factor in ER-associated degradation protein 1 isoform C
UFD1 at chr22:19449911-19479193 - (NM_001035247) ubiquitin recognition factor in ER-associated degradation protein 1 isoform B
UFD1 at chr22:19449911-19479193 - (NM_005659) ubiquitin recognition factor in ER-associated degradation protein 1 isoform A

Non-Human RefSeq Genes

UFD1 at chr22:19449947-19479124 - (NM_001257731) ubiquitin recognition factor in ER-associated degradation protein 1
ufd1 at chr22:19450670-19475602 - (NM_001292478) ubiquitin fusion degradation protein 1 homolog
ufd1 at chr22:19450670-19475602 - (NM_001006805) ubiquitin fusion degradation protein 1 homolog
UFD1 at chr22:19450641-19475602 - (NM_001075300) ubiquitin recognition factor in ER-associated degradation protein 1
Ufd1 at chr22:19449808-19475603 - (NR_028403) 
ufd1 at chr22:19450682-19475626 - (NM_001303732) ubiquitin recognition factor in ER-associated degradation protein 1
Ufd1 at chr22:19450529-19475603 - (NM_053418) ubiquitin recognition factor in ER-associated degradation protein 1
Ufd1 at chr22:19449808-19475603 - (NM_011672) ubiquitin recognition factor in ER-associated degradation protein 1
UFD1 at chr18:26831970-26832329 - (NM_127699) ubiquitin fusion degradation 1
Ufd1-like at chr22:19458068-19471806 - (NM_079299) ubiquitin fusion-degradation 1-like
ufd1.S at chr22:19450670-19475602 - (NM_001090169) ubiquitin fusion degradation protein 1 homolog
Ufd1l at chr22:19458068-19471806 - (NM_001204958) ubiquitin fusion degradation protein 1 homolog
UFD1L at chr22:19450670-19475603 - (NM_204301) ubiquitin recognition factor in ER-associated degradation protein 1
ufd1l at chr22:19450670-19475602 - (NM_001002451) ubiquitin recognition factor in ER-associated degradation protein 1
F19H22.30; F19H22_30 at chr18:26831970-26832329 - (NM_120053) Ubiquitin fusion degradation UFD1 family protein
F19H22.30; F19H22_30 at chr18:26831970-26832329 - (NM_001342513) Ubiquitin fusion degradation UFD1 family protein
F19H22.30; F19H22_30 at chr18:26831970-26832329 - (NM_202980) Ubiquitin fusion degradation UFD1 family protein
F19H22.30; F19H22_30 at chr18:26831970-26832329 - (NM_001342514) Ubiquitin fusion degradation UFD1 family protein
UFD1 at chr18:26831976-26832308 - (NM_001181177) polyubiquitin-binding protein UFD1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

UFD1 at chr22:19449911-19479193
UFD1 at chr22:19450621-19479172

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

UFD1 at chr22:19449911-19479193
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450625-19467716
UFD1 at chr22:19455680-19479202
UFD1 at chr22:19456880-19479185
UFD1 at chr22:19465202-19479083
UFD1 at chr22:19467403-19479187
UFD1 at chr22:19467873-19478931
UFD1 at chr22:19467895-19479144

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

UFD1 at chr22:19449910-19479215
UFD1 at chr22:19450621-19479172

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

UFD1 at chr22:19449910-19479215
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450625-19467716
UFD1 at chr22:19455680-19479202
UFD1 at chr22:19456880-19479185
UFD1 at chr22:19465202-19479083
UFD1 at chr22:19467403-19479187
UFD1 at chr22:19467873-19478931
UFD1 at chr22:19467895-19479144

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

UFD1 at chr22:19449910-19479215
UFD1 at chr22:19450621-19479172

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

UFD1 at chr22:19449910-19479215
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450621-19479172
UFD1 at chr22:19450625-19467716
UFD1 at chr22:19455680-19479202
UFD1 at chr22:19456880-19479185
UFD1 at chr22:19465202-19479083
UFD1 at chr22:19467403-19479187
UFD1 at chr22:19467873-19478931
UFD1 at chr22:19467895-19479144

Retroposed Genes V9, Including Pseudogenes

UFD1 at chr5:122361713-122362508 - (CU674530.1-3)
UFD1 at chr18:26830782-26832520 - (NM_005659.6-1)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ufd1l_48394 at chr22:19449941-19479215
Ufd1l_66299 at chr22:19449941-19479215

Human Aligned mRNA Search Results

AJ239058 - Homo sapiens mRNA for ubiquitin fusion degradation 1 protein (ufd1 gene).
BC001049 - Homo sapiens ubiquitin fusion degradation 1 like (yeast), mRNA (cDNA clone MGC:1385 IMAGE:3507963), complete cds.
BC005087 - Homo sapiens ubiquitin fusion degradation 1 like (yeast), mRNA (cDNA clone MGC:13073 IMAGE:3830774), complete cds.
CR456607 - Homo sapiens UFD1L full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.UFD1L).
U64444 - Homo sapiens ubiquitin fusion-degradation 1 like protein (UFD1L) mRNA, complete cds.
AF141201 - Homo sapiens ubiquitin fusion-degradation 1 protein (UFD1) mRNA, complete cds.

Non-Human Aligned mRNA Search Results

KA647282 - TSA: Musca domestica ALHF_05004.g3403 mRNA sequence.
FJ630377 - Synthetic construct Drosophila melanogaster clone BO06401 encodes Ufd1-like-RA.
FJ635351 - Synthetic construct Drosophila melanogaster clone BS06101 encodes Ufd1-like-RA.
DQ778951 - Synthetic construct UFD1b gene, complete cds.
DQ778950 - Synthetic construct UFD1a gene, complete cds.
AF234601 - Rattus norvegicus UFD1 mRNA, complete cds.
U64445 - Mus musculus ubiquitin fusion-degradation 1 like protein (ufd1l) mRNA, complete cds.
MG133623 - Synthetic construct Xenopus tropicalis clone IMAGE:6980401 ubiquitin fusion degradation 1 like (ufd1l) gene, encodes complete protein.
BC076020 - Danio rerio ubiquitin fusion degradation 1-like, mRNA (cDNA clone MGC:92341 IMAGE:7055639), complete cds.
BC076680 - Xenopus tropicalis ubiquitin fusion degradation 1 like, mRNA (cDNA clone MGC:79664 IMAGE:6980401), complete cds.
BC153586 - Danio rerio ubiquitin fusion degradation 1-like, mRNA (cDNA clone MGC:174376 IMAGE:8802362), complete cds.
BC006630 - Mus musculus ubiquitin fusion degradation 1 like, mRNA (cDNA clone MGC:11477 IMAGE:3708320), complete cds.
BC161818 - Rattus norvegicus ubiquitin fusion degradation 1 like (yeast), mRNA (cDNA clone MGC:187268 IMAGE:9101868), complete cds.
AF407671 - Gallus gallus ubiquitin fusion-degradation 1-like protein (Ufd1l) mRNA, complete cds.
FJ464591 - Guillardia theta ubiquitin fusion degradation protein (ufd1) mRNA, complete cds.
BC120441 - Bos taurus ubiquitin fusion degradation 1 like, mRNA (cDNA clone MGC:142939 IMAGE:8314599), complete cds.
JU319921 - TSA: Macaca mulatta Mamu_504242 mRNA sequence.
BT076823 - Caligus rogercresseyi clone crog-evp-513-249 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT080715 - Caligus clemensi clone ccle-evs-510-125 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT121557 - Lepeophtheirus salmonis Atlantic form clone lsaA-evv-523-358 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT049661 - Salmo salar clone ssal-eve-567-265 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT050000 - Salmo salar clone ssal-rgb2-540-198 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT073484 - Oncorhynchus mykiss clone omyk-evn-512-145 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT074343 - Oncorhynchus mykiss clone omyk-evo-502-136 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT074460 - Osmerus mordax clone omor-eva-504-072 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT079017 - Esox lucius clone eluc-evq-517-043 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT082193 - Anoplopoma fimbria clone afim-evh-504-123 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
BT083019 - Anoplopoma fimbria clone afim-evh-524-201 Ubiquitin fusion degradation protein 1 homolog putative mRNA, complete cds.
AY060735 - Drosophila melanogaster GH18603 full length cDNA.
EU441875 - Xenopus borealis clone Ufd1l.a2 ubiquitin fusion-degradation 1 (Ufd1) mRNA, partial cds.

Pfam Domains in UCSC Genes

UFD1 at chr22:19456901-19479085