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Gencode Genes

TRIM49 (ENST00000329758.5) at chr11:89797655-89808575 - Homo sapiens tripartite motif containing 49 (TRIM49), mRNA. (from RefSeq NM_020358)
TRIM49 (ENST00000532501.2) at chr11:89797947-89807220 - Contains 1 B box-type zinc finger. (from UniProt E9PK69)
TRIM49B (ENST00000622138.4) at chr11:49027501-49038451 - Belongs to the TRIM/RBCC family. (from UniProt A6NDI0)
TRIM49C (ENST00000448984.1) at chr11:90031106-90042025 - Homo sapiens tripartite motif containing 49C (TRIM49C), mRNA. (from RefSeq NM_001195234)
TRIM49B (ENST00000332682.8) at chr11:49028857-49038029 - Homo sapiens tripartite motif containing 49B (TRIM49B), mRNA. (from RefSeq NM_001206626)
TRIM49D2 (ENST00000623787.3) at chr11:89924064-89933063 - Homo sapiens tripartite motif containing 49D2 (TRIM49D2), mRNA. (from RefSeq NM_001105522)
TRIM49D1 (ENST00000530311.6) at chr11:89911111-89921767 - Belongs to the TRIM/RBCC family. (from UniProt C9J1S8)
TRIM49D1 (ENST00000605881.5) at chr11:89911407-89920428 - tripartite motif containing 49D1 (from HGNC TRIM49D1)
TRIM49D2 (ENST00000526396.3) at chr11:89926762-89932937 - Belongs to the TRIM/RBCC family. (from UniProt C9J1S8)
TRIM49D1 (ENST00000420869.2) at chr11:89911409-89920408 - Homo sapiens tripartite motif containing 49D1 (TRIM49D1), mRNA. (from RefSeq NM_001206627)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_020358.2 at chr11:89797655-89808575
NM_001206626.1 at chr11:49031600-49037977
NM_001195234.1 at chr11:90031106-90042025
NM_001206627.1 at chr11:89911472-89917710
NM_001105522.1 at chr11:89924064-89933063

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_024448617.1 at chr11:89766436-89804469
XM_017018027.2 at chr11:89797952-89804473
XM_017017561.1 at chr11:49031596-49038049
XM_017018126.1 at chr11:90035208-90041690
XM_024448656.1 at chr11:90035212-90073546
XM_011542816.3 at chr11:89911472-89920410

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

TRIM49 at chr11:89797655-89808575
TRIM49C at chr11:90031106-90042025

RefSeq Genes

TRIM49 at chr11:89797655-89808575 - (NM_020358) tripartite motif-containing protein 49
TRIM49B at chr11:49031600-49037977 - (NM_001206626) tripartite motif-containing protein
TRIM49C at chr11:90031106-90042025 - (NM_001195234) tripartite motif-containing protein 49C
TRIM49D1 at chr11:89926762-89933000 - (NM_001206627) tripartite motif-containing protein 49D
TRIM49D1 at chr11:89911472-89917710 - (NM_001206627) tripartite motif-containing protein 49D
TRIM49D2 at chr11:89911411-89920408 - (NM_001105522) tripartite motif-containing protein 49D
TRIM49D2 at chr11:89924064-89933061 - (NM_001105522) tripartite motif-containing protein 49D

NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

TRIM51FP at chr11:49832966-49839330
TRIM51FP at chr11_KZ559108v1_fix:297115-303479

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TRIM49 at chr11:89797655-89808575
TRIM49 at chr11:89797947-89807220

Retroposed Genes V9, Including Pseudogenes

TRIM49B at chr2:95596162-95596433 - (NM_001206626.1-113)
TRIM49B at chr2:95596162-95596433 - (NM_001206626.1-113)

Human Aligned mRNA Search Results

JF968462 - Homo sapiens clone F2 TRIM49L2 mRNA, partial cds.
JF968461 - Homo sapiens clone F1 TRIM49 mRNA, partial cds.
JF968448 - Homo sapiens clone A2 TRIM49L1 mRNA, partial cds.
BC075019 - Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone MGC:104001 IMAGE:30915409), complete cds.
BC075020 - Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone MGC:104159 IMAGE:30915620), complete cds.
BC126470 - Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone MGC:161748 IMAGE:8992186), complete cds.
BC126472 - Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone MGC:161750 IMAGE:8992188), complete cds.

JU325020 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1025   93.9%         11     ++  89847297  89933056  JU325020     1  1025  1033
 1025   93.9%         11     +-  89911416  89997214  JU325020     1  1025  1033