Human hg19 TRIM24 UCSC Genome Browser v463

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UCSC Genes

TRIM24 (uc003vuc.3) at chr7:138145079-138270332 - Homo sapiens tripartite motif containing 24 (TRIM24), transcript variant 1, mRNA.
TRIM24 (uc022amn.1) at chr7:138145810-138255748 - Homo sapiens tripartite motif containing 24 (TRIM24), transcript variant 2, mRNA.
TRIM24 (uc003vub.3) at chr7:138145079-138270332 - Homo sapiens tripartite motif containing 24 (TRIM24), transcript variant 2, mRNA.
BRD7 (uc021thx.1) at chr16:50352929-50402845 - Homo sapiens bromodomain containing 7 (BRD7), transcript variant 2, mRNA.
TRIM33 (uc001eew.3) at chr1:114935399-115053781 - Homo sapiens tripartite motif containing 33 (TRIM33), transcript variant a, mRNA.
CBX5 (uc001sfj.4) at chr12:54624731-54653370 - Homo sapiens chromobox homolog 5 (CBX5), transcript variant 2, mRNA.
CBX5 (uc001sfk.4) at chr12:54624731-54673915 - Homo sapiens chromobox homolog 5 (CBX5), transcript variant 3, mRNA.
CBX5 (uc001sfh.4) at chr12:54624731-54653329 - Homo sapiens chromobox homolog 5 (CBX5), transcript variant 1, mRNA.
KAT5 (uc001ofi.3) at chr11:65479473-65487077 - Homo sapiens K(lysine) acetyltransferase 5 (KAT5), transcript variant 2, mRNA.
KAT5 (uc001ofl.3) at chr11:65480091-65487077 - Homo sapiens K(lysine) acetyltransferase 5 (KAT5), transcript variant 3, mRNA.
CARM1 (uc002mpz.3) at chr19:10982253-11033448 - Homo sapiens coactivator-associated arginine methyltransferase 1 (CARM1), mRNA.
TP53 (uc002gij.3) at chr17:7571720-7590868 - Homo sapiens tumor protein p53 (TP53), transcript variant 1, mRNA.
CARHSP1 (uc031qux.1) at chr16:8946799-8955667 - Homo sapiens calcium regulated heat stable protein 1, 24kDa (CARHSP1), transcript variant 5, mRNA.
TP53 (uc002gim.3) at chr17:7571720-7590868 - Homo sapiens tumor protein p53 (TP53), transcript variant 2, mRNA.
TP53 (uc002gii.2) at chr17:7571720-7578811 - Homo sapiens tumor protein p53 (TP53), transcript variant 5, mRNA.
RET (uc001jal.3) at chr10:43572517-43625797 - Homo sapiens ret proto-oncogene (RET), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_, NR_, NP_* or YP_*)

NM_003852.4 at chr7:138145004-138274741
NM_015905.3 at chr7:138145004-138274741

RefSeq Genes

TRIM24 at chr7:138145004-138274741 - (NM_015905) transcription intermediary factor 1-alpha isoform a
TRIM24 at chr7:138145004-138274741 - (NM_003852) transcription intermediary factor 1-alpha isoform b

Non-Human RefSeq Genes

trim24 at chr7:138145372-138269558 - (NM_001127976) transcription intermediary factor 1-alpha
TRIM24 at chr7:138145248-138270327 - (NM_001260835) transcription intermediary factor 1-alpha
Trim24 at chr7:138239612-138310798 - (NM_001044266) transcription intermediary factor 1-alpha
Trim24 at chr7:138189033-138271649 - (NM_001272076) transcription intermediary factor 1-alpha isoform 3
Trim24 at chr7:138145056-138271649 - (NM_001272064) transcription intermediary factor 1-alpha isoform 2
Trim24 at chr7:138145056-138271649 - (NM_145076) transcription intermediary factor 1-alpha isoform 1
trim24.S at chr7:138145372-138235927 - (NM_001094825) tripartite motif containing 24 S homeolog

Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330

Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

TRIM24 at chr7:138145004-138274741
TRIM24 at chr7:138145180-138270330
TRIM24 at chr7:138145810-138255613
TRIM24 at chr7:138199145-138200050
TRIM24 at chr7:138199145-138210059
TRIM24 at chr7:138239515-138258387

International Knockout Mouse Consortium Genes Mapped to Human Genome

Trim24_36075 at chr7:138145079-138270333
Trim24_80546 at chr7:138145079-138270333

BC028689 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.

 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 3893  100.0%          7     + 138145182 138270324  BC028689     2  3894  3909

Non-Human Aligned mRNA Search Results

BC163977 - Danio rerio tripartite motif-containing 24, mRNA (cDNA clone MGC:191152 IMAGE:100059461), complete cds.
BC107915 - Rattus norvegicus tripartite motif-containing 24, mRNA (cDNA clone IMAGE:7459236), partial cds.
BC025482 - Synthetic construct Mus musculus tripartite motif-containing 24, mRNA (cDNA clone IMAGE:5150949), partial cds.
BC056959 - Mus musculus tripartite motif-containing 24, mRNA (cDNA clone MGC:66731 IMAGE:5698079), complete cds.
JU327617 - TSA: Macaca mulatta Mamu_516595 mRNA sequence.
JU332019 - TSA: Macaca mulatta Mamu_537819 mRNA sequence.
JU477657 - TSA: Macaca mulatta Mamu_380150 mRNA sequence.
JU477658 - TSA: Macaca mulatta Mamu_380149 mRNA sequence.

Ensembl Genes

TRIM24 at chr7:138199145-138200050 - (ENST00000485318)
TRIM24 at chr7:138145810-138255613 - (ENST00000497516)
TRIM24 at chr7:138145079-138274738 - (ENST00000343526)
TRIM24 at chr7:138145180-138270330 - (ENST00000415680)
TRIM24 at chr7:138199145-138210059 - (ENST00000464210)
TRIM24 at chr7:138239515-138258387 - (ENST00000493595)

Vega Protein-Coding Annotations

OTTHUMT00000342099 at chr7:138144953-138210202
OTTHUMT00000341821 at chr7:138145079-138270333
OTTHUMT00000341814 at chr7:138145079-138274738
OTTHUMT00000341820 at chr7:138145180-138270330
OTTHUMT00000341819 at chr7:138145288-138258387
OTTHUMT00000342619 at chr7:138145810-138255613
OTTHUMT00000341816 at chr7:138189035-138240217
OTTHUMT00000342101 at chr7:138199145-138200050
OTTHUMT00000342100 at chr7:138199145-138210059
OTTHUMT00000342102 at chr7:138239515-138258387

HUGO Gene Nomenclature

TRIM24 at chr7:138145005-138274741

gnomAD Loss of Function Metrics by Gene

TRIM24 at chr7:138145079-138274738

gnomAD Loss of Function Metrics by Transcript

ENST00000343526 at chr7:138145079-138274738
ENST00000415680 at chr7:138145180-138270330