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Gencode Genes

TRIM11 (ENST00000284551.11) at chr1:228393676-228406835 - Homo sapiens tripartite motif containing 11 (TRIM11), mRNA. (from RefSeq NM_145214)
TRIM11 (ENST00000602582.5) at chr1:228394825-228406187 - tripartite motif containing 11 (from HGNC TRIM11)
TRIM11 (ENST00000602308.1) at chr1:228396613-228406186 - tripartite motif containing 11 (from HGNC TRIM11)
TRIM11 (ENST00000493030.6) at chr1:228393673-228405904 - tripartite motif containing 11 (from HGNC TRIM11)
TRIM11 (ENST00000475775.1) at chr1:228395208-228397689 - tripartite motif containing 11 (from HGNC TRIM11)
TRIM11 (ENST00000366699.3) at chr1:228395534-228406800 - E3 ubiquitin-protein ligase that promotes the  degradation of insoluble ubiquitinated proteins, including  insoluble PAX6, poly-Gln repeat expanded HTT and poly-Ala repeat  expanded ARX. Mediates PAX6 ubiquitination leading to proteasomal  degradation, thereby modulating cortical neurogenesis. May also  inhibit PAX6 transcriptional activity, possibly in part by  preventing the binding of PAX6 to its consensus sequences. May  contribute to the regulation of the intracellular level of HN  (humanin) or HN-containing proteins through the proteasomal  degradation pathway. Mediates MED15 ubiquitination leading to  proteasomal degradation. May contribute to the innate restriction  of retroviruses. Upon overexpression, reduces HIV-1 and murine  leukemia virus infectivity, by suppressing viral gene expression.  Antiviral activity depends on a functional E3 ubiquitin-protein  ligase domain. May regulate TRIM5 turnover via the proteasome  pathway, thus counteracting the TRIM5-mediated cross-species  restriction of retroviral infection at early stages of the  retroviral life cycle. (from UniProt Q96F44)
PAX6 (ENST00000379129.7) at chr11:31788912-31817961 - Transcription factor with important functions in the  development of the eye, nose, central nervous system and pancreas.  Required for the differentiation of pancreatic islet alpha cells  (By similarity). Competes with PAX4 in binding to a common element  in the glucagon, insulin and somatostatin promoters. Regulates  specification of the ventral neuron subtypes by establishing the  correct progenitor domains (By similarity). Isoform 5a appears to  function as a molecular switch that specifies target genes. (from UniProt P26367)
PAX6 (ENST00000379107.7) at chr11:31789194-31810305 - Transcription factor with important functions in the  development of the eye, nose, central nervous system and pancreas.  Required for the differentiation of pancreatic islet alpha cells  (By similarity). Competes with PAX4 in binding to a common element  in the glucagon, insulin and somatostatin promoters. Regulates  specification of the ventral neuron subtypes by establishing the  correct progenitor domains (By similarity). Isoform 5a appears to  function as a molecular switch that specifies target genes. (from UniProt P26367)
PHOX2B (ENST00000226382.3) at chr4:41744082-41748970 - Homo sapiens paired like homeobox 2B (PHOX2B), mRNA. (from RefSeq NM_003924)
PAX6 (ENST00000640975.1) at chr11:31789202-31812342 - Homo sapiens paired box 6 (PAX6), transcript variant 8, mRNA. (from RefSeq NM_001310158)
PAX6 (ENST00000640368.1) at chr11:31784782-31811310 - Homo sapiens paired box 6 (PAX6), transcript variant 19, mRNA. (from RefSeq NM_001368894)
PAX6 (ENST00000639409.1) at chr11:31789202-31812183 - Homo sapiens paired box 6 (PAX6), transcript variant 5, mRNA. (from RefSeq NM_001258463)
PAX6 (ENST00000419022.6) at chr11:31784792-31811331 - Homo sapiens paired box 6 (PAX6), transcript variant 2, mRNA. (from RefSeq NM_001604)
MED15 (ENST00000382974.6) at chr22:20507641-20586867 - Homo sapiens mediator complex subunit 15 (MED15), transcript variant 5, mRNA. (from RefSeq NM_001293236)
MED15 (ENST00000292733.11) at chr22:20507602-20587632 - Homo sapiens mediator complex subunit 15 (MED15), transcript variant 2, mRNA. (from RefSeq NM_015889)
MED15 (ENST00000263205.11) at chr22:20507610-20587619 - Homo sapiens mediator complex subunit 15 (MED15), transcript variant 1, mRNA. (from RefSeq NM_001003891)
PAX6 (ENST00000606377.6) at chr11:31784779-31811134 - Homo sapiens paired box 6 (PAX6), transcript variant 52, non-coding RNA. (from RefSeq NR_160916)
PAX6 (ENST00000638914.3) at chr11:31784792-31817961 - Homo sapiens paired box 6 (PAX6), transcript variant 53, non-coding RNA. (from RefSeq NR_160917)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_145214.2 at chr1:228393676-228406816

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017002412.2 at chr1:228393672-228406644
XM_011544285.3 at chr1:228393672-228406644

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

TRIM11 at chr1:228393676-228406835

RefSeq Genes

TRIM11 at chr1:228393676-228406835 - (NM_145214) E3 ubiquitin-protein ligase TRIM11

Non-Human RefSeq Genes

Trim11 at chr1:228394433-228406566 - (NM_053168) E3 ubiquitin-protein ligase TRIM11 isoform 2
TRIM11 at chr1:228394693-228406584 - (NM_001077920) E3 ubiquitin-protein ligase TRIM11
Trim11 at chr1:228394433-228406566 - (NM_001108276) E3 ubiquitin-protein ligase TRIM11
Trim11 at chr1:228394433-228406566 - (NM_001290988) E3 ubiquitin-protein ligase TRIM11 isoform 1
TRIM11 at chr1:228393688-228406816 - (NM_001261480) E3 ubiquitin-protein ligase TRIM11

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406835
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406835
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186
TRIM11 at chr1:228397048-228397109

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228395534-228406800

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TRIM11 at chr1:228393673-228405904
TRIM11 at chr1:228393676-228406840
TRIM11 at chr1:228394825-228406187
TRIM11 at chr1:228395208-228397689
TRIM11 at chr1:228395534-228406800
TRIM11 at chr1:228396613-228406186

International Knockout Mouse Consortium Genes Mapped to Human Genome

Trim11_VG14479 at chr1:228393676-228406816

Human Aligned mRNA Search Results

BC011629 - Homo sapiens tripartite motif-containing 11, mRNA (cDNA clone IMAGE:3957038), complete cds.
AF220125 - Homo sapiens tripartite motif protein TRIM11 (TRIM11) mRNA, partial cds.
BC069227 - Homo sapiens tripartite motif-containing 11, mRNA (cDNA clone MGC:78395 IMAGE:4875080), complete cds.
AK314539 - Homo sapiens cDNA, FLJ95361, highly similar to Homo sapiens tripartite motif-containing 11 (TRIM11), mRNA.

Non-Human Aligned mRNA Search Results

JU324880 - TSA: Macaca mulatta Mamu_507337 mRNA sequence.
JU326985 - TSA: Macaca mulatta Mamu_527755 mRNA sequence.
JU477353 - TSA: Macaca mulatta Mamu_366947 mRNA sequence.
BC020102 - Mus musculus tripartite motif-containing 11, mRNA (cDNA clone MGC:28318 IMAGE:4014766), complete cds.
BC160894 - Rattus norvegicus tripartite motif-containing 11, mRNA (cDNA clone MGC:188334 IMAGE:7446534), complete cds.
AF220124 - Mus musculus tripartite motif protein TRIM11 (Trim11) mRNA, complete cds.
BC126548 - Bos taurus tripartite motif-containing 11, mRNA (cDNA clone MGC:142513 IMAGE:8242014), complete cds.