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Gencode Genes

TDG (ENST00000392872.8) at chr12:103965872-103988874 - Homo sapiens thymine DNA glycosylase (TDG), transcript variant 1, mRNA. (from RefSeq NM_003211)
TDG (ENST00000545698.1) at chr12:103965842-103980473 - thymine DNA glycosylase (from HGNC TDG)
TDG (ENST00000544861.5) at chr12:103965845-103987194 - Homo sapiens thymine DNA glycosylase (TDG), transcript variant 2, mRNA. (from RefSeq NM_001363612)
TDG (ENST00000544060.1) at chr12:103965903-103980668 - thymine DNA glycosylase (from HGNC TDG)
TDG (ENST00000542926.5) at chr12:103979865-103987057 - thymine DNA glycosylase (from HGNC TDG)
TDG (ENST00000540956.1) at chr12:103979955-103987244 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YH18)
TDG (ENST00000537100.5) at chr12:103965886-103983389 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt F5H0I7)
TDG (ENST00000536395.1) at chr12:103986234-103987025 - thymine DNA glycosylase (from HGNC TDG)
TDG (ENST00000436021.6) at chr12:103965822-103982810 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt F5H539)
TDG (ENST00000266775.13) at chr12:103965845-103987192 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt G8JL98)
AICDA (ENST00000537228.5) at chr12:8604284-8612867 - Homo sapiens activation induced cytidine deaminase (AICDA), transcript variant 2, mRNA. (from RefSeq NM_001330343)
AICDA (ENST00000229335.11) at chr12:8602170-8612859 - Homo sapiens activation induced cytidine deaminase (AICDA), transcript variant 1, mRNA. (from RefSeq NM_020661)
GADD45A (ENST00000370986.9) at chr1:67685201-67688334 - Homo sapiens growth arrest and DNA damage inducible alpha (GADD45A), transcript variant 1, mRNA. (from RefSeq NM_001924)
GADD45A (ENST00000370985.4) at chr1:67685201-67687986 - Homo sapiens growth arrest and DNA damage inducible alpha (GADD45A), transcript variant 2, mRNA. (from RefSeq NM_001199741)
SUMO1 (ENST00000392245.5) at chr2:202206187-202238599 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 2, mRNA. (from RefSeq NM_001005781)
SUMO1 (ENST00000392244.7) at chr2:202206768-202238566 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 3, mRNA. (from RefSeq NM_001005782)
SUMO1 (ENST00000392246.6) at chr2:202206180-202238608 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 1, mRNA. (from RefSeq NM_003352)
RAD23B (ENST00000416373.6) at chr9:107284053-107332192 - Homo sapiens RAD23 homolog B, nucleotide excision repair protein (RAD23B), transcript variant 3, mRNA. (from RefSeq NM_001244724)
RAD23B (ENST00000358015.8) at chr9:107283279-107332189 - Homo sapiens RAD23 homolog B, nucleotide excision repair protein (RAD23B), transcript variant 1, mRNA. (from RefSeq NM_002874)
XPC (ENST00000476581.6) at chr3:14145729-14178601 - Homo sapiens XPC complex subunit, DNA damage recognition and repair factor (XPC), transcript variant 8, non-coding RNA. (from RefSeq NR_148951)
TDGF1P2 (ENST00000413322.1) at chr2:227870083-227870644 - teratocarcinoma-derived growth factor 1 pseudogene 2 (from HGNC TDGF1P2)
TDGF1P6 (ENST00000463873.1) at chr3:136155549-136155996 - teratocarcinoma-derived growth factor 1 pseudogene 6 (from HGNC TDGF1P6)
TDGF1 (ENST00000296145.6) at chr3:46577788-46582457 - Homo sapiens teratocarcinoma-derived growth factor 1 (TDGF1), transcript variant 1, mRNA. (from RefSeq NM_003212)
TDGF1P4 (ENST00000401555.2) at chr6:3941282-3941801 - teratocarcinoma-derived growth factor 1 pseudogene 4 (from HGNC TDGF1P4)
TDGF1P5 (ENST00000523009.1) at chr8:54073114-54073566 - teratocarcinoma-derived growth factor 1 pseudogene 5 (from HGNC TDGF1P5)
TDGP1 (ENST00000543961.1) at chr12:25803298-25804526 - thymine-DNA glycosylase pseudogene 1 (from HGNC TDGP1)
TDGF1P7 (ENST00000593394.1) at chr19:39534463-39535021 - teratocarcinoma-derived growth factor 1 pseudogene 7 (from HGNC TDGF1P7)
TDGF1P3 (ENST00000602699.1) at chrX:110520312-110523021 - Homo sapiens teratocarcinoma-derived growth factor 1 pseudogene 3 (TDGF1P3), non-coding RNA. (from RefSeq NR_002718)
TDGF1P1 (ENST00000445734.1) at chrX:38395369-38395895 - teratocarcinoma-derived growth factor 1 pseudogene 1 (from HGNC TDGF1P1)
TDGF1 (ENST00000542931.6) at chr3:46574534-46581860 - Homo sapiens teratocarcinoma-derived growth factor 1 (TDGF1), transcript variant 2, mRNA. (from RefSeq NM_001174136)
TDGF1 (ENST00000493282.5) at chr3:46577748-46579936 - teratocarcinoma-derived growth factor 1 (from HGNC TDGF1)
TDGF1 (ENST00000471721.1) at chr3:46577765-46579642 - teratocarcinoma-derived growth factor 1 (from HGNC TDGF1)
TDGF1 (ENST00000459867.1) at chr3:46579142-46579779 - teratocarcinoma-derived growth factor 1 (from HGNC TDGF1)
TDGF1P3 (ENST00000493351.1) at chrX:110521130-110521696 - teratocarcinoma-derived growth factor 1 pseudogene 3 (from HGNC TDGF1P3)
ACVR1B (ENST00000542485.1) at chr12:51953380-51994925 - Homo sapiens activin A receptor type 1B (ACVR1B), transcript variant 2, mRNA. (from RefSeq NM_020327)
ACVR1B (ENST00000541224.5) at chr12:51951701-51994217 - Homo sapiens activin A receptor type 1B (ACVR1B), transcript variant 3, mRNA. (from RefSeq NM_020328)
ACVR1B (ENST00000257963.9) at chr12:51951699-51997078 - Homo sapiens activin A receptor type 1B (ACVR1B), transcript variant 1, mRNA. (from RefSeq NM_004302)
ACVR1B (ENST00000426655.6) at chr12:51951702-51992341 - Transmembrane serine/threonine kinase activin type-1  receptor forming an activin receptor complex with activin receptor  type-2 (ACVR2A or ACVR2B). Transduces the activin signal from the  cell surface to the cytoplasm and is thus regulating a many  physiological and pathological processes including neuronal  differentiation and neuronal survival, hair follicle development  and cycling, FSH production by the pituitary gland, wound healing,  extracellular matrix production, immunosuppression and  carcinogenesis. Activin is also thought to have a paracrine or  autocrine role in follicular development in the ovary. Within the  receptor complex, type-2 receptors (ACVR2A and/or ACVR2B) act as a  primary activin receptors whereas the type-1 receptors like ACVR1B  act as downstream transducers of activin signals. Activin binds to  type-2 receptor at the plasma membrane and activates its serine-  threonine kinase. The activated receptor type-2 then  phosphorylates and activates the type-1 receptor such as ACVR1B.  Once activated, the type-1 receptor binds and phosphorylates the  SMAD proteins SMAD2 and SMAD3, on serine residues of the C-  terminal tail. Soon after their association with the activin  receptor and subsequent phosphorylation, SMAD2 and SMAD3 are  released into the cytoplasm where they interact with the common  partner SMAD4. This SMAD complex translocates into the nucleus  where it mediates activin-induced transcription. Inhibitory SMAD7,  which is recruited to ACVR1B through FKBP1A, can prevent the  association of SMAD2 and SMAD3 with the activin receptor complex,  thereby blocking the activin signal. Activin signal transduction  is also antagonized by the binding to the receptor of inhibin-B  via the IGSF1 inhibin coreceptor. ACVR1B also phosphorylates TDP2. (from UniProt P36896)
ACVR1B (ENST00000415850.6) at chr12:51951744-51987346 - Transmembrane serine/threonine kinase activin type-1  receptor forming an activin receptor complex with activin receptor  type-2 (ACVR2A or ACVR2B). Transduces the activin signal from the  cell surface to the cytoplasm and is thus regulating a many  physiological and pathological processes including neuronal  differentiation and neuronal survival, hair follicle development  and cycling, FSH production by the pituitary gland, wound healing,  extracellular matrix production, immunosuppression and  carcinogenesis. Activin is also thought to have a paracrine or  autocrine role in follicular development in the ovary. Within the  receptor complex, type-2 receptors (ACVR2A and/or ACVR2B) act as a  primary activin receptors whereas the type-1 receptors like ACVR1B  act as downstream transducers of activin signals. Activin binds to  type-2 receptor at the plasma membrane and activates its serine-  threonine kinase. The activated receptor type-2 then  phosphorylates and activates the type-1 receptor such as ACVR1B.  Once activated, the type-1 receptor binds and phosphorylates the  SMAD proteins SMAD2 and SMAD3, on serine residues of the C-  terminal tail. Soon after their association with the activin  receptor and subsequent phosphorylation, SMAD2 and SMAD3 are  released into the cytoplasm where they interact with the common  partner SMAD4. This SMAD complex translocates into the nucleus  where it mediates activin-induced transcription. Inhibitory SMAD7,  which is recruited to ACVR1B through FKBP1A, can prevent the  association of SMAD2 and SMAD3 with the activin receptor complex,  thereby blocking the activin signal. Activin signal transduction  is also antagonized by the binding to the receptor of inhibin-B  via the IGSF1 inhibin coreceptor. ACVR1B also phosphorylates TDP2. (from UniProt P36896)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_003211.4 at chr12:103965815-103988878
NM_001174136.1 at chr3:46574555-46582463
NM_003212.3 at chr3:46577586-46582463
NR_002718.2 at chrX:110520312-110523021

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011538715.1 at chr12:103965842-103988874
XM_011538714.1 at chr12:103965842-103988874
XM_005269125.2 at chr12:103965944-103988874

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

TDG at chr12:103965872-103988874
TDGF1 at chr3:46577788-46582457

RefSeq Genes

TDG at chr12:103965804-103988878 - (NM_001363612) G/T mismatch-specific thymine DNA glycosylase isoform 2
TDG at chr12:103965872-103988874 - (NM_003211) G/T mismatch-specific thymine DNA glycosylase isoform 1
TDGF1 at chr3:46574535-46582457 - (NM_001174136) teratocarcinoma-derived growth factor 1 isoform 2
TDGF1 at chr3:46577788-46582457 - (NM_003212) teratocarcinoma-derived growth factor 1 isoform 1 precursor
TDGF1P3 at chrX:110520312-110523021 - (NR_002718) 

NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

TDGF1P7 at chr19:39534496-39536333
TDGF1P6 at chr3:136155548-136157044
TDGF1P5 at chr8:54072991-54073937
TDGF1P4 at chr6:3941259-3942007
TDGF1P2 at chr2:227869170-227870585

Non-Human RefSeq Genes

TDG at chr12:103976915-103988805 - (NM_001083696) G/T mismatch-specific thymine DNA glycosylase
TDG at chr12:103976925-103988537 - (NM_204750) G/T mismatch-specific thymine DNA glycosylase
Tdg at chr12:103976919-103988583 - (NM_053729) G/T mismatch-specific thymine DNA glycosylase
Tdg at chr12:25803322-25806022 - (NM_053729) G/T mismatch-specific thymine DNA glycosylase
Tdg at chr12:103979830-103988581 - (NM_001358517) G/T mismatch-specific thymine DNA glycosylase isoform 3
Tdg at chr12:103979830-103988581 - (NM_011561) G/T mismatch-specific thymine DNA glycosylase isoform 1
Tdg at chr12:103979830-103988581 - (NM_172552) G/T mismatch-specific thymine DNA glycosylase isoform 2
tdg.1 at chr12:103979971-103987036 - (NM_001020751) G/T mismatch-specific thymine DNA glycosylase
tdg.S at chr12:103979944-103985667 - (NM_001090821) thymine DNA glycosylase S homeolog
TDGF1 at chrX:110521106-110522820 - (NM_001080358) teratocarcinoma-derived growth factor 1 precursor
TDGF1 at chr8:54073113-54073771 - (NM_001080358) teratocarcinoma-derived growth factor 1 precursor
TDGF1 at chr3:46579231-46582210 - (NM_001080358) teratocarcinoma-derived growth factor 1 precursor

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965872-103988874

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965872-103988874
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TDG at chr12:103965804-103988874
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TDG at chr12:103965804-103988874
TDG at chr12:103965822-103982810
TDG at chr12:103965842-103980473
TDG at chr12:103965845-103987192
TDG at chr12:103965845-103987194
TDG at chr12:103965886-103983389
TDG at chr12:103965903-103980668
TDG at chr12:103979865-103987057
TDG at chr12:103979955-103987244
TDG at chr12:103986234-103987025

Retroposed Genes V9, Including Pseudogenes

TDG at chr12:25803193-25806259 - (NM_003211.4-2)
TDGF1 at chrX:38394171-38395921 - (NM_001174136.1-671)
TDGF1 at chr6:3941254-3943293 - (NM_001174136.1-531)
TDGF1 at chr2:227869171-227870585 - (NM_001174136.1-393)
TDG at chr12:25803193-25806259 - (NM_003211.4-2)
TDGF1 at chr19:39534457-39536333 - (NM_003212.3-313)
TDGF1 at chr3:136155548-136157044 - (NM_001174136.1-461)
TDGF1 at chr8:54073093-54073993 - (NM_001174136.1-614)
TDGF1 at chrX:110520746-110522910 - (NM_003212.3-662)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Tdgf1_27448 at chr3:46574555-46582463
Tdgf1_VG17252 at chr3:46574555-46582463
Tdg_47654 at chr12:103965815-103988878
Tdg_83324 at chr12:103965815-103988878

Human Aligned mRNA Search Results

BC019925 - Homo sapiens thymine-DNA glycosylase, mRNA (cDNA clone IMAGE:3881825), partial cds.
BC104477 - Homo sapiens thymine-DNA glycosylase, mRNA (cDNA clone IMAGE:6605225), partial cds.
M96956 - Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.
BC022393 - Homo sapiens teratocarcinoma-derived growth factor 1, mRNA (cDNA clone MGC:24110 IMAGE:4615416), complete cds.
BC067844 - Homo sapiens teratocarcinoma-derived growth factor 1, mRNA (cDNA clone MGC:87434 IMAGE:5286020), complete cds.
BC037557 - Homo sapiens thymine-DNA glycosylase, mRNA (cDNA clone MGC:40342 IMAGE:5184772), complete cds.
AK313319 - Homo sapiens cDNA, FLJ93835, highly similar to Homo sapiens teratocarcinoma-derived growth factor 1 (TDGF1), mRNA.
AK313234 - Homo sapiens cDNA, FLJ93738, highly similar to Homo sapiens thymine-DNA glycosylase (TDG), mRNA.

Non-Human Aligned mRNA Search Results

BC165885 - Danio rerio thymine-DNA glycosylase, mRNA (cDNA clone MGC:192973 IMAGE:100061465), complete cds.
AF069519 - Mus musculus T:G mismatch-specific thymine-DNA glycosylase TDGb isoform mRNA, complete cds.
BC134451 - Bos taurus thymine-DNA glycosylase, mRNA (cDNA clone MGC:140185 IMAGE:8168686), complete cds.
BC041496 - Xenopus laevis similar to thymine-DNA glycosylase, mRNA (cDNA clone IMAGE:4889704), partial cds.
BC077465 - Xenopus laevis similar to thymine-DNA glycosylase, mRNA (cDNA clone MGC:82456 IMAGE:4930111), complete cds.
BC095340 - Danio rerio thymine-DNA glycosylase, mRNA (cDNA clone MGC:110622 IMAGE:7163647), complete cds.
BC010315 - Mus musculus thymine DNA glycosylase, mRNA (cDNA clone MGC:11428 IMAGE:3595866), complete cds.
BC085470 - Mus musculus thymine DNA glycosylase, mRNA (cDNA clone MGC:101905 IMAGE:6416434), complete cds.
BC085471 - Mus musculus thymine DNA glycosylase, mRNA (cDNA clone MGC:101906 IMAGE:6816716), complete cds.
BC129088 - Rattus norvegicus thymine-DNA glycosylase, mRNA (cDNA clone MGC:156614 IMAGE:8362408), complete cds.
BT021740 - Bos taurus teratocarcinoma-derived growth factor 1 (TDGF1), mRNA, complete cds.
JT415699 - TSA: Ictalurus punctatus aby_k53:1097210 mRNA sequence.
JU324851 - TSA: Macaca mulatta Mamu_541113 mRNA sequence.
JU472094 - TSA: Macaca mulatta Mamu_373518 mRNA sequence.
HQ228998 - Sus scrofa thymine-DNA glycosylase-like (TDGR) mRNA, partial sequence.
AB172689 - Macaca fascicularis brain cDNA clone: QflA-19233, similar to human thymine-DNA glycosylase (TDG), mRNA, RefSeq: NM_003211.2.