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Gencode Genes

TAF4 (ENST00000252996.8) at chr20:61974798-62065810 - Homo sapiens TATA-box binding protein associated factor 4 (TAF4), mRNA. (from RefSeq NM_003185)
TAF4 (ENST00000628525.2) at chr20_KI270869v1_alt:64040-108774 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000609045.1) at chr20:62010067-62012883 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000609041.1) at chr20:62004509-62006995 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000608887.1) at chr20:62012874-62064366 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000608458.1) at chr20:61975859-61981432 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000488539.1) at chr20:62000568-62007561 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000486599.1) at chr20:62008851-62010133 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000474089.5) at chr20:61953469-61998187 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000436129.2) at chr20:61975357-62008187 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000628040.1) at chr20_KI270869v1_alt:85944-118774 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000627770.2) at chr20_KI270869v1_alt:85385-118223 - Homo sapiens TATA-box binding protein associated factor 4 (TAF4), mRNA. (from RefSeq NM_003185)
TAF4 (ENST00000626855.1) at chr20_KI270869v1_alt:86446-92019 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000626682.1) at chr20_KI270869v1_alt:111155-118148 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TAF4 (ENST00000625376.1) at chr20_KI270869v1_alt:115096-117582 - TATA-box binding protein associated factor 4 (from HGNC TAF4)
TEX10 (ENST00000535814.5) at chr9:100302077-100352571 - Homo sapiens testis expressed 10 (TEX10), transcript variant 2, mRNA. (from RefSeq NM_001161584)
TEX10 (ENST00000374902.9) at chr9:100302084-100352942 - Homo sapiens testis expressed 10 (TEX10), transcript variant 1, mRNA. (from RefSeq NM_017746)
SUPT3H (ENST00000475057.5) at chr6:44809317-45377953 - Homo sapiens SPT3 homolog, SAGA and STAGA complex component (SUPT3H), non-coding RNA. (from RefSeq NR_146635)
CRTC1 (ENST00000338797.10) at chr19:18683678-18782333 - Homo sapiens CREB regulated transcription coactivator 1 (CRTC1), transcript variant 3, mRNA. (from RefSeq NM_001098482)
SUPT3H (ENST00000371460.5) at chr6:44828732-45377933 - Homo sapiens SPT3 homolog, SAGA and STAGA complex component (SUPT3H), transcript variant 2, mRNA. (from RefSeq NM_181356)
CRTC1 (ENST00000321949.13) at chr19:18683680-18782333 - Homo sapiens CREB regulated transcription coactivator 1 (CRTC1), transcript variant 1, mRNA. (from RefSeq NM_015321)
C17orf49 (ENST00000439424.6) at chr17:7014782-7017520 - Homo sapiens chromosome 17 open reading frame 49 (C17orf49), transcript variant 2, mRNA. (from RefSeq NM_174893)
SUPT3H (ENST00000371459.6) at chr6:44826726-45377934 - Homo sapiens SPT3 homolog, SAGA and STAGA complex component (SUPT3H), transcript variant 1, mRNA. (from RefSeq NM_003599)
C17orf49 (ENST00000552402.5) at chr17:7014769-7017519 - Homo sapiens chromosome 17 open reading frame 49 (C17orf49), transcript variant 3, mRNA. (from RefSeq NM_001142799)
C17orf49 (ENST00000546495.5) at chr17:7014495-7017375 - Homo sapiens chromosome 17 open reading frame 49 (C17orf49), transcript variant 1, mRNA. (from RefSeq NM_001142798)
LAS1L (ENST00000374811.7) at chrX:65512582-65534756 - Homo sapiens LAS1 like, ribosome biogenesis factor (LAS1L), transcript variant 1, mRNA. (from RefSeq NM_031206)
LAS1L (ENST00000374807.9) at chrX:65512582-65534754 - Homo sapiens LAS1 like, ribosome biogenesis factor (LAS1L), transcript variant 2, mRNA. (from RefSeq NM_001170649)
LAS1L (ENST00000374804.9) at chrX:65512583-65534756 - Homo sapiens LAS1 like, ribosome biogenesis factor (LAS1L), transcript variant 3, mRNA. (from RefSeq NM_001170650)
LAS1L (ENST00000484069.1) at chrX:65512583-65534775 - Involved in the biogenesis of the 60S ribosomal subunit.  Required for maturation of the 28S rRNA. (from UniProt Q9Y4W2)
PRPF31 (ENST00000619391.1) at chr19_KI270938v1_alt:89903-106263 - Involved in pre-mRNA splicing. Required for U4/U6.U5  tri-snRNP formation. (from UniProt Q8WWY3)
PRPF31 (ENST00000419967.5) at chr19:54115410-54131719 - Involved in pre-mRNA splicing. Required for U4/U6.U5  tri-snRNP formation. (from UniProt Q8WWY3)
INO80C (ENST00000441607.6) at chr18:35468463-35497943 - Homo sapiens INO80 complex subunit C (INO80C), transcript variant 1, mRNA. (from RefSeq NM_001098817)
INO80C (ENST00000334598.11) at chr18:35468333-35497991 - Homo sapiens INO80 complex subunit C (INO80C), transcript variant 2, mRNA. (from RefSeq NM_194281)
KANSL1 (ENST00000572904.6) at chr17:46029916-46223676 - As part of the NSL complex it is involved in acetylation  of nucleosomal histone H4 on several lysine residues and therefore  may be involved in the regulation of transcription. (from UniProt Q7Z3B3)
INO80C (ENST00000592173.5) at chr18:35452230-35497933 - Proposed core component of the chromatin remodeling  INO80 complex which is involved in transcriptional regulation, DNA  replication and probably DNA repair. (from UniProt Q6PI98)
PHF20 (ENST00000374012.8) at chr20:35772015-35950370 - Homo sapiens PHD finger protein 20 (PHF20), mRNA. (from RefSeq NM_016436)
MGA (ENST00000219905.11) at chr15:41660412-41769943 - Homo sapiens MAX dimerization protein MGA (MGA), transcript variant 1, mRNA. (from RefSeq NM_001164273)
CRTC3 (ENST00000420329.6) at chr15:90529925-90645345 - Homo sapiens CREB regulated transcription coactivator 3 (CRTC3), transcript variant 2, mRNA. (from RefSeq NM_001042574)
CRTC3 (ENST00000268184.11) at chr15:90529923-90645345 - Homo sapiens CREB regulated transcription coactivator 3 (CRTC3), transcript variant 1, mRNA. (from RefSeq NM_022769)
MGA (ENST00000545763.5) at chr15:41660412-41769941 - Homo sapiens MAX dimerization protein MGA (MGA), transcript variant 2, mRNA. (from RefSeq NM_001080541)
KANSL1 (ENST00000262419.10) at chr17:46029956-46192800 - Homo sapiens KAT8 regulatory NSL complex subunit 1 (KANSL1), transcript variant 1, mRNA. (from RefSeq NM_001193466)
KANSL1 (ENST00000574590.6) at chr17:46029916-46225389 - Homo sapiens KAT8 regulatory NSL complex subunit 1 (KANSL1), transcript variant 3, mRNA. (from RefSeq NM_001193465)
KANSL1 (ENST00000432791.6) at chr17:46029916-46193198 - Homo sapiens KAT8 regulatory NSL complex subunit 1 (KANSL1), transcript variant 2, mRNA. (from RefSeq NM_015443)
MCRS1 (ENST00000546244.5) at chr12:49558295-49568145 - Homo sapiens microspherule protein 1 (MCRS1), transcript variant 3, mRNA. (from RefSeq NM_001278341)
MCRS1 (ENST00000357123.8) at chr12:49558643-49566439 - Homo sapiens microspherule protein 1 (MCRS1), transcript variant 2, mRNA. (from RefSeq NM_001012300)
MCRS1 (ENST00000343810.9) at chr12:49558299-49568142 - Homo sapiens microspherule protein 1 (MCRS1), transcript variant 1, mRNA. (from RefSeq NM_006337)
ASH2L (ENST00000521652.5) at chr8:38105939-38139703 - Homo sapiens ASH2 like, histone lysine methyltransferase complex subunit (ASH2L), transcript variant 3, mRNA. (from RefSeq NM_001261832)
ASH2L (ENST00000428278.6) at chr8:38105793-38139703 - Homo sapiens ASH2 like, histone lysine methyltransferase complex subunit (ASH2L), transcript variant 2, mRNA. (from RefSeq NM_001105214)
ASH2L (ENST00000343823.11) at chr8:38105529-38140080 - Homo sapiens ASH2 like, histone lysine methyltransferase complex subunit (ASH2L), transcript variant 1, mRNA. (from RefSeq NM_004674)
PRPF31 (ENST00000613693.4) at chr19_KI270938v1_alt:89950-106253 - Homo sapiens pre-mRNA processing factor 31 (PRPF31), mRNA. (from RefSeq NM_015629)
PRPF31 (ENST00000321030.9) at chr19:54115754-54131713 - Homo sapiens pre-mRNA processing factor 31 (PRPF31), mRNA. (from RefSeq NM_015629)
ATF7 (ENST00000548446.6) at chr12:53507856-53626370 - Homo sapiens ATF7-NPFF readthrough (ATF7-NPFF), transcript variant 3, non-coding RNA. (from RefSeq NR_159377)
ATF7 (ENST00000456903.8) at chr12:53513442-53626000 - Homo sapiens activating transcription factor 7 (ATF7), transcript variant 9, mRNA. (from RefSeq NM_001366558)
MAX (ENST00000556979.5) at chr14:65077287-65102517 - Transcription regulator. Forms a sequence-specific DNA-  binding protein complex with MYC or MAD which recognizes the core  sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional  activator, whereas the MAD-MAX complex is a repressor. May repress  transcription via the recruitment of a chromatin remodeling  complex containing H3 'Lys-9' histone methyltransferase activity. (from UniProt P61244)
MAX (ENST00000553928.5) at chr14:65076458-65102360 - Transcription regulator. Forms a sequence-specific DNA-  binding protein complex with MYC or MAD which recognizes the core  sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional  activator, whereas the MAD-MAX complex is a repressor. May repress  transcription via the recruitment of a chromatin remodeling  complex containing H3 'Lys-9' histone methyltransferase activity. (from UniProt P61244)
MAX (ENST00000394606.6) at chr14:65075127-65102519 - Transcription regulator. Forms a sequence-specific DNA-  binding protein complex with MYC or MAD which recognizes the core  sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional  activator, whereas the MAD-MAX complex is a repressor. May repress  transcription via the recruitment of a chromatin remodeling  complex containing H3 'Lys-9' histone methyltransferase activity. (from UniProt P61244)
MAX (ENST00000284165.10) at chr14:65075202-65102488 - Transcription regulator. Forms a sequence-specific DNA-  binding protein complex with MYC or MAD which recognizes the core  sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional  activator, whereas the MAD-MAX complex is a repressor. May repress  transcription via the recruitment of a chromatin remodeling  complex containing H3 'Lys-9' histone methyltransferase activity. (from UniProt P61244)
ATF7 (ENST00000420353.7) at chr12:53512054-53626382 - Homo sapiens activating transcription factor 7 (ATF7), transcript variant 2, mRNA. (from RefSeq NM_006856)
ATF7 (ENST00000591397.1) at chr12:53542887-53626410 - Homo sapiens activating transcription factor 7 (ATF7), transcript variant 4, mRNA. (from RefSeq NM_001206682)
ATF7 (ENST00000548118.6) at chr12:53542887-53625996 - Homo sapiens activating transcription factor 7 (ATF7), transcript variant 14, mRNA. (from RefSeq NM_001366563)
MCRS1 (ENST00000550165.5) at chr12:49558363-49568101 - Modulates the transcription repressor activity of DAXX  by recruiting it to the nucleolus. As part of the NSL complex it  may be involved in acetylation of nucleosomal histone H4 on  several lysine residues. Putative regulatory component of the  chromatin remodeling INO80 complex which is involved in  transcriptional regulation, DNA replication and probably DNA  repair. May also be an inhibitor of TERT telomerase activity. (from UniProt Q96EZ8)
MGA (ENST00000570161.5) at chr15:41668895-41769941 - Functions as a dual-specificity transcription factor,  regulating the expression of both MAX-network and T-box family  target genes. Functions as a repressor or an activator. Binds to  5'-AATTTCACACCTAGGTGTGAAATT-3' core sequence and seems to regulate  MYC-MAX target genes. Suppresses transcriptional activation by MYC  and inhibits MYC-dependent cell transformation. Function activated  by heterodimerization with MAX. This heterodimerization serves the  dual function of both generating an E-box-binding heterodimer and  simultaneously blocking interaction of a corepressor (By  similarity). (from UniProt Q8IWI9)
MGA (ENST00000566586.5) at chr15:41668828-41773081 - Functions as a dual-specificity transcription factor,  regulating the expression of both MAX-network and T-box family  target genes. Functions as a repressor or an activator. Binds to  5'-AATTTCACACCTAGGTGTGAAATT-3' core sequence and seems to regulate  MYC-MAX target genes. Suppresses transcriptional activation by MYC  and inhibits MYC-dependent cell transformation. Function activated  by heterodimerization with MAX. This heterodimerization serves the  dual function of both generating an E-box-binding heterodimer and  simultaneously blocking interaction of a corepressor (By  similarity). (from UniProt Q8IWI9)
KAT2A (ENST00000225916.10) at chr17:42113111-42121367 - Homo sapiens lysine acetyltransferase 2A (KAT2A), mRNA. (from RefSeq NM_021078)
CRTC2 (ENST00000368633.2) at chr1:153947675-153958612 - Homo sapiens CREB regulated transcription coactivator 2 (CRTC2), mRNA. (from RefSeq NM_181715)
KAT8 (ENST00000219797.9) at chr16:31117664-31131359 - Homo sapiens lysine acetyltransferase 8 (KAT8), transcript variant 1, mRNA. (from RefSeq NM_032188)
KAT8 (ENST00000448516.6) at chr16:31117664-31131359 - Homo sapiens lysine acetyltransferase 8 (KAT8), transcript variant 2, mRNA. (from RefSeq NM_182958)
KAT8 (ENST00000543774.6) at chr16:31115754-31131393 - Histone acetyltransferase which may be involved in  transcriptional activation. May influence the function of ATM. As  part of the MSL complex it is involved in acetylation of  nucleosomal histone H4 producing specifically H4K16ac. As part of  the NSL complex it may be involved in acetylation of nucleosomal  histone H4 on several lysine residues. That activity is less  specific than the one of the MSL complex. (from UniProt Q9H7Z6)
RBBP5 (ENST00000367164.1) at chr1:205086142-205122015 - Homo sapiens RB binding protein 5, histone lysine methyltransferase complex subunit (RBBP5), transcript variant 2, mRNA. (from RefSeq NM_001193272)
RBBP5 (ENST00000264515.11) at chr1:205086142-205121978 - Homo sapiens RB binding protein 5, histone lysine methyltransferase complex subunit (RBBP5), transcript variant 1, mRNA. (from RefSeq NM_005057)
TAF9 (ENST00000506736.1) at chr5:69364743-69366821 - Essential for cell viability. TAF9 and TAF9B are  involved in transcriptional activation as well as repression of  distinct but overlapping sets of genes. May have a role in gene  regulation associated with apoptosis. TAFs are components of the  transcription factor IID (TFIID) complex, the TBP-free TAFII  complex (TFTC), the PCAF histone acetylase complex and the STAGA  transcription coactivator-HAT complex. TFIID or TFTC are essential  for the regulation of RNA polymerase II-mediated transcription. (from UniProt Q16594)
TAF9 (ENST00000616867.1) at chr5_GL339449v2_alt:147938-150016 - Essential for cell viability. TAF9 and TAF9B are  involved in transcriptional activation as well as repression of  distinct but overlapping sets of genes. May have a role in gene  regulation associated with apoptosis. TAFs are components of the  transcription factor IID (TFIID) complex, the TBP-free TAFII  complex (TFTC), the PCAF histone acetylase complex and the STAGA  transcription coactivator-HAT complex. TFIID or TFTC are essential  for the regulation of RNA polymerase II-mediated transcription. (from UniProt Q16594)
SENP3 (ENST00000429205.6) at chr17:7562226-7571969 - Protease that releases SUMO2 and SUMO3 monomers from  sumoylated substrates, but has only weak activity against SUMO1  conjugates. Deconjugates SUMO2 from MEF2D, which increases its  transcriptional activation capability. Deconjugates SUMO2 and  SUMO3 from CDCA8. Redox sensor that, when redistributed into  nucleoplasm, can act as an effector to enhance HIF1A  transcriptional activity by desumoylating EP300. Required for rRNA  processing through deconjugation of SUMO2 and SUMO3 from  nucleophosmin, NPM1. (from UniProt Q9H4L4)
MAX (ENST00000618858.4) at chr14:65075124-65102544 - Homo sapiens MYC associated factor X (MAX), transcript variant 3, mRNA. (from RefSeq NM_145113)
TAF7 (ENST00000313368.8) at chr5:141318490-141320784 - Homo sapiens TATA-box binding protein associated factor 7 (TAF7), mRNA. (from RefSeq NM_005642)
MAX (ENST00000358402.8) at chr14:65075124-65102504 - Homo sapiens MYC associated factor X (MAX), transcript variant 2, mRNA. (from RefSeq NM_145112)
MAX (ENST00000341653.6) at chr14:65006174-65102387 - Homo sapiens MYC associated factor X (MAX), transcript variant 6, mRNA. (from RefSeq NM_197957)
MAX (ENST00000358664.9) at chr14:65075127-65102517 - Homo sapiens MYC associated factor X (MAX), transcript variant 1, mRNA. (from RefSeq NM_002382)
E2F6 (ENST00000307236.8) at chr2:11444375-11466177 - Homo sapiens E2F transcription factor 6 (E2F6), transcript variant b, mRNA. (from RefSeq NM_001278275)
MAX (ENST00000246163.2) at chr14:65083744-65102509 - Homo sapiens MYC associated factor X (MAX), transcript variant 4, mRNA. (from RefSeq NM_145114)
E2F6 (ENST00000381525.8) at chr2:11444375-11466161 - Homo sapiens E2F transcription factor 6 (E2F6), transcript variant a, mRNA. (from RefSeq NM_198256)
TRRAP (ENST00000355540.7) at chr7:98878490-99013243 - Homo sapiens transformation/transcription domain associated protein (TRRAP), transcript variant 2, mRNA. (from RefSeq NM_003496)
WDR5 (ENST00000358625.3) at chr9:134136088-134159968 - Homo sapiens WD repeat domain 5 (WDR5), transcript variant 2, mRNA. (from RefSeq NM_052821)
TRRAP (ENST00000359863.8) at chr7:98878490-99013243 - Homo sapiens transformation/transcription domain associated protein (TRRAP), transcript variant 1, mRNA. (from RefSeq NM_001244580)
TAF5 (ENST00000369839.4) at chr10:103367976-103389065 - Homo sapiens TATA-box binding protein associated factor 5 (TAF5), transcript variant 2, mRNA. (from RefSeq NM_139052)
CHD8 (ENST00000399982.6) at chr14:21385195-21431708 - Homo sapiens chromodomain helicase DNA binding protein 8 (CHD8), transcript variant 1, mRNA. (from RefSeq NM_001170629)
CHD8 (ENST00000430710.8) at chr14:21385194-21437245 - Homo sapiens chromodomain helicase DNA binding protein 8 (CHD8), transcript variant 2, mRNA. (from RefSeq NM_020920)
KMT2A (ENST00000649699.1) at chr11:118436513-118522172 - Histone methyltransferase that plays an essential role  in early development and hematopoiesis. Catalytic subunit of the  MLL1/MLL complex, a multiprotein complex that mediates both  methylation of 'Lys-4' of histone H3 (H3K4me) complex and  acetylation of 'Lys-16' of histone H4 (H4K16ac). In the MLL1/MLL  complex, it specifically mediates H3K4me, a specific tag for  epigenetic transcriptional activation. Has weak methyltransferase  activity by itself, and requires other component of the MLL1/MLL  complex to obtain full methyltransferase activity. Has no activity  toward histone H3 phosphorylated on 'Thr-3', less activity toward  H3 dimethylated on 'Arg-8' or 'Lys-9', while it has higher  activity toward H3 acetylated on 'Lys-9'. Required for  transcriptional activation of HOXA9. Promotes PPP1R15A-induced  apoptosis. (from UniProt Q03164)
CHD8 (ENST00000645929.1) at chr14:21385201-21456090 - DNA helicase that acts as a chromatin remodeling factor  and regulates transcription. Acts as a transcription repressor by  remodeling chromatin structure and recruiting histone H1 to target  genes. Suppresses p53/TP53-mediated apoptosis by recruiting  histone H1 and preventing p53/TP53 transactivation activity. Acts  as a negative regulator of Wnt signaling pathway by regulating  beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-  targeted gene expression by being recruited specifically to the  promoter regions of several CTNNB1 responsive genes. Involved in  both enhancer blocking and epigenetic remodeling at chromatin  boundary via its interaction with CTCF. Acts as a suppressor of  STAT3 activity by suppressing the LIF-induced STAT3  transcriptional activity. Also acts as a transcription activator  via its interaction with ZNF143 by participating in efficient U6  RNA polymerase III transcription. (from UniProt Q9HCK8)
CHD8 (ENST00000557364.6) at chr14:21385494-21437276 - DNA helicase that acts as a chromatin remodeling factor  and regulates transcription. Acts as a transcription repressor by  remodeling chromatin structure and recruiting histone H1 to target  genes. Suppresses p53/TP53-mediated apoptosis by recruiting  histone H1 and preventing p53/TP53 transactivation activity. Acts  as a negative regulator of Wnt signaling pathway by regulating  beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-  targeted gene expression by being recruited specifically to the  promoter regions of several CTNNB1 responsive genes. Involved in  both enhancer blocking and epigenetic remodeling at chromatin  boundary via its interaction with CTCF. Acts as a suppressor of  STAT3 activity by suppressing the LIF-induced STAT3  transcriptional activity. Also acts as a transcription activator  via its interaction with ZNF143 by participating in efficient U6  RNA polymerase III transcription. (from UniProt Q9HCK8)
CHD8 (ENST00000646647.1) at chr14:21385198-21456126 - DNA helicase that acts as a chromatin remodeling factor  and regulates transcription. Acts as a transcription repressor by  remodeling chromatin structure and recruiting histone H1 to target  genes. Suppresses p53/TP53-mediated apoptosis by recruiting  histone H1 and preventing p53/TP53 transactivation activity. Acts  as a negative regulator of Wnt signaling pathway by regulating  beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-  targeted gene expression by being recruited specifically to the  promoter regions of several CTNNB1 responsive genes. Involved in  both enhancer blocking and epigenetic remodeling at chromatin  boundary via its interaction with CTCF. Acts as a suppressor of  STAT3 activity by suppressing the LIF-induced STAT3  transcriptional activity. Also acts as a transcription activator  via its interaction with ZNF143 by participating in efficient U6  RNA polymerase III transcription. (from UniProt Q9HCK8)
CHD8 (ENST00000643469.1) at chr14:21385495-21437308 - DNA helicase that acts as a chromatin remodeling factor  and regulates transcription. Acts as a transcription repressor by  remodeling chromatin structure and recruiting histone H1 to target  genes. Suppresses p53/TP53-mediated apoptosis by recruiting  histone H1 and preventing p53/TP53 transactivation activity. Acts  as a negative regulator of Wnt signaling pathway by regulating  beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-  targeted gene expression by being recruited specifically to the  promoter regions of several CTNNB1 responsive genes. Involved in  both enhancer blocking and epigenetic remodeling at chromatin  boundary via its interaction with CTCF. Acts as a suppressor of  STAT3 activity by suppressing the LIF-induced STAT3  transcriptional activity. Also acts as a transcription activator  via its interaction with ZNF143 by participating in efficient U6  RNA polymerase III transcription. (from UniProt Q9HCK8)
KMT2A (ENST00000389506.10) at chr11:118436490-118523917 - Homo sapiens lysine methyltransferase 2A (KMT2A), transcript variant 2, mRNA. (from RefSeq NM_005933)
TAF10 (ENST00000299424.9) at chr11:6606294-6612216 - Homo sapiens TATA-box binding protein associated factor 10 (TAF10), mRNA. (from RefSeq NM_006284)
KMT2A (ENST00000534358.7) at chr11:118436492-118526832 - Homo sapiens lysine methyltransferase 2A (KMT2A), transcript variant 1, mRNA. (from RefSeq NM_001197104)
SENP3 (ENST00000321337.12) at chr17:7561919-7571969 - Homo sapiens SUMO specific peptidase 3 (SENP3), mRNA. (from RefSeq NM_015670)
RNF2 (ENST00000367509.8) at chr1:185045526-185101057 - E3 ubiquitin-protein ligase that mediates  monoubiquitination of 'Lys-119' of histone H2A, thereby playing a  central role in histone code and gene regulation. H2A 'Lys-119'  ubiquitination gives a specific tag for epigenetic transcriptional  repression and participates in X chromosome inactivation of female  mammals. May be involved in the initiation of both imprinted and  random X inactivation. Essential component of a Polycomb group  (PcG) multiprotein PRC1-like complex, a complex class required to  maintain the transcriptionally repressive state of many genes,  including Hox genes, throughout development. PcG PRC1 complex acts  via chromatin remodeling and modification of histones, rendering  chromatin heritably changed in its expressibility. E3 ubiquitin-  protein ligase activity is enhanced by BMI1/PCGF4. Acts as the  main E3 ubiquitin ligase on histone H2A of the PRC1 complex, while  RING1 may rather act as a modulator of RNF2/RING2 activity. (from UniProt Q99496)
TAF9 (ENST00000328663.8) at chr5:69364744-69370013 - Homo sapiens TATA-box binding protein associated factor 9 (TAF9), transcript variant 4, mRNA. (from RefSeq NM_001015892)
TAF9 (ENST00000615404.1) at chr5_GL339449v2_alt:147939-153209 - Homo sapiens TATA-box binding protein associated factor 9 (TAF9), transcript variant 4, mRNA. (from RefSeq NM_001015892)
TAF9 (ENST00000617893.4) at chr5_GL339449v2_alt:147940-152838 - Homo sapiens TATA-box binding protein associated factor 9 (TAF9), transcript variant 1, mRNA. (from RefSeq NM_003187)
TAF9 (ENST00000217893.10) at chr5:69364743-69369520 - Homo sapiens TATA-box binding protein associated factor 9 (TAF9), transcript variant 1, mRNA. (from RefSeq NM_003187)
RNF2 (ENST00000367510.8) at chr1:185045558-185102603 - Homo sapiens ring finger protein 2 (RNF2), mRNA. (from RefSeq NM_007212)
TAF1 (ENST00000423759.5) at chrX:71366239-71466004 - Homo sapiens TATA-box binding protein associated factor 1 (TAF1), transcript variant 12, non-coding RNA. (from RefSeq NR_104395)
TAF1 (ENST00000373790.8) at chrX:71366264-71466005 - Homo sapiens TATA-box binding protein associated factor 1 (TAF1), transcript variant 2, mRNA. (from RefSeq NM_138923)
TAF1 (ENST00000276072.7) at chrX:71366305-71464046 - Homo sapiens TATA-box binding protein associated factor 1 (TAF1), transcript variant 11, non-coding RNA. (from RefSeq NR_104394)
HCFC1 (ENST00000310441.12) at chrX:153947557-153971818 - Homo sapiens host cell factor C1 (HCFC1), mRNA. (from RefSeq NM_005334)
PELP1 (ENST00000574876.5) at chr17:4671385-4704129 - Coactivator of estrogen receptor-mediated transcription  and a corepressor of other nuclear hormone receptors and sequence-  specific transcription factors. Plays a role in estrogen receptor  (ER) genomic activity when present in the nuclear compartment by  activating the ER target genes in a hormonal stimulation dependent  manner. Can facilitate ER non-genomic signaling via SRC and PI3K  interaction in the cytosol. Plays a role in E2-mediated cell cycle  progression by interacting with RB1. May have important functional  implications in ER/growth factor cross-talk. Interacts with  several growth factor signaling components including EGFR and HRS.  Involved in nuclear receptor signaling via its interaction with AR  and NR3C1. May promote tumorigenesis via its interaction with and  modulation of several oncogenes including SRC, PI3K, STAT3 and  EGFR. Plays a role in cancer cell metastasis via its ability to  modulate E2-mediated cytoskeleton changes and cell migration via  its interaction with SRC and PI3K. (from UniProt Q8IZL8)
RUVBL1 (ENST00000322623.10) at chr3:128080810-128123812 - Homo sapiens RuvB like AAA ATPase 1 (RUVBL1), transcript variant 1, mRNA. (from RefSeq NM_003707)
RUVBL2 (ENST00000595090.6) at chr19:48993887-49015970 - Homo sapiens RuvB like AAA ATPase 2 (RUVBL2), transcript variant 4, non-coding RNA. (from RefSeq NR_135578)
TAF4B (ENST00000269142.9) at chr18:26225936-26391685 - Homo sapiens TATA-box binding protein associated factor 4b (TAF4B), transcript variant 2, mRNA. (from RefSeq NM_005640)
TAF4B (ENST00000578121.5) at chr18:26226486-26390164 - Homo sapiens TATA-box binding protein associated factor 4b (TAF4B), transcript variant 1, mRNA. (from RefSeq NM_001293725)
TAF4B (ENST00000418698.3) at chr18:26226883-26391683 - Homo sapiens TATA-box binding protein associated factor 4b (TAF4B), transcript variant 3, non-coding RNA. (from RefSeq NR_121653)
TAF6 (ENST00000437822.6) at chr7:100107168-100119841 - Homo sapiens TATA-box binding protein associated factor 6 (TAF6), transcript variant 5, mRNA. (from RefSeq NM_001190415)
TAF6 (ENST00000453269.7) at chr7:100107070-100119358 - Homo sapiens TATA-box binding protein associated factor 6 (TAF6), transcript variant 2, mRNA. (from RefSeq NM_139315)
TAF6 (ENST00000344095.8) at chr7:100107079-100119346 - Homo sapiens TATA-box binding protein associated factor 6 (TAF6), transcript variant 1, mRNA. (from RefSeq NM_005641)
TAF6 (ENST00000452041.5) at chr7:100107078-100119364 - Homo sapiens TATA-box binding protein associated factor 6 (TAF6), transcript variant 6, non-coding RNA. (from RefSeq NR_033792)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_003185.3 at chr20:61974798-62065810
NM_003185.3 at chr20_KI270869v1_alt:85385-118232
NM_005640.2 at chr18:26226883-26391685
NR_121653.1 at chr18:26226883-26391685
NM_001293725.1 at chr18:26226883-26391685

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_024451239.1 at chr18:26226445-26391244
XM_005258339.3 at chr18:26226491-26305397
XM_017025932.1 at chr18:26226491-26315313
XM_011526153.2 at chr18:26226491-26321141
XM_017025933.1 at chr18:26227206-26391685

RefSeq Genes

TAF4 at chr20_KI270869v1_alt:85385-118224 - (NM_003185) transcription initiation factor TFIID subunit 4
TAF4 at chr20:61974798-62065810 - (NM_003185) transcription initiation factor TFIID subunit 4
TAF4B at chr18:26226445-26391685 - (NR_121653) 
TAF4B at chr18:26226445-26391685 - (NM_001293725) transcription initiation factor TFIID subunit 4B isoform 1
TAF4B at chr18:26226445-26391685 - (NM_005640) transcription initiation factor TFIID subunit 4B isoform 2

Non-Human RefSeq Genes

taf4 at chr20_KI270869v1_alt:86755-118224 - (NM_001078817) transcription initiation factor TFIID subunit 4
taf4 at chr20:61976164-62065819 - (NM_001078817) transcription initiation factor TFIID subunit 4
Taf4 at chr20_KI270869v1_alt:85379-118224 - (NM_001081092) transcription initiation factor TFIID subunit 4
Taf4 at chr20:61974792-62065810 - (NM_001081092) transcription initiation factor TFIID subunit 4
taf4.L at chr20_KI270869v1_alt:86755-118223 - (NM_001097799) TATA-box binding protein associated factor 4 L homeolog
taf4.L at chr20:61976164-62065813 - (NM_001097799) TATA-box binding protein associated factor 4 L homeolog
TAF4B at chr18:26226925-26390148 - (NM_001205844) transcription initiation factor TFIID subunit 4B
Taf4b at chr18:26226537-26391931 - (NM_001100449) transcription initiation factor TFIID subunit 4B isoform 1
Taf4b at chr18:26226537-26391931 - (NM_001369357) transcription initiation factor TFIID subunit 4B isoform 2
Taf4b at chr18:26226537-26391931 - (NM_001369358) transcription initiation factor TFIID subunit 4B isoform 3

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61953546-61953662
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TAF4 at chr20:61974798-62065810
TAF4 at chr20_KI270869v1_alt:85385-118223

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366
TAF4 at chr20_KI270869v1_alt:64040-108774
TAF4 at chr20_KI270869v1_alt:85385-118223
TAF4 at chr20_KI270869v1_alt:85944-118774
TAF4 at chr20_KI270869v1_alt:86446-92019
TAF4 at chr20_KI270869v1_alt:111155-118148
TAF4 at chr20_KI270869v1_alt:115096-117582

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TAF4 at chr20:61974798-62065810

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

TAF4 at chr20:61953469-61998187
TAF4 at chr20:61974798-62065810
TAF4 at chr20:61975357-62008187
TAF4 at chr20:61975859-61981432
TAF4 at chr20:62000568-62007561
TAF4 at chr20:62004509-62006995
TAF4 at chr20:62008851-62010133
TAF4 at chr20:62010067-62012883
TAF4 at chr20:62012874-62064366

Retroposed Genes V9, Including Pseudogenes

TAF4B at chr4:112826302-112827723 - (NR_121653.1-4)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Taf4a_45008 at chr20:61974798-62065810
Taf4a_82479 at chr20:61974798-62065810

Human Aligned mRNA Search Results

AB234096 - Homo sapiens taf4b mRNA for TATA box binding protein (TBP)-associated factor 4B, complete cds.
BC032791 - Homo sapiens TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa, mRNA (cDNA clone IMAGE:3456971), with apparent retained intron.
BC016360 - Homo sapiens TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa, mRNA (cDNA clone IMAGE:4099482), with apparent retained intron.

Non-Human Aligned mRNA Search Results

JP019189 - TSA: Mustela putorius furo MPF81014433contig1/3 mRNA sequence.
JP019190 - TSA: Mustela putorius furo MPF81014434contig2/3 mRNA sequence.
JP019191 - TSA: Mustela putorius furo MPF81014435contig3/3 mRNA sequence.
BC169204 - Synthetic construct Mus musculus clone IMAGE:9093222 TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf4a) gene, partial cds.
BC121308 - Xenopus tropicalis TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa, mRNA (cDNA clone MGC:145595 IMAGE:7692369), complete cds.
KX151012 - Castor fiber TAF4 RNA polymerase II TATA box binding protein-associated factor variant 2 (TAF4) mRNA, partial cds.
KX151011 - Castor fiber TAF4 RNA polymerase II TATA box binding protein-associated factor variant 1 (TAF4) mRNA, partial cds.
JU328384 - TSA: Macaca mulatta Mamu_534220 mRNA sequence.
JU329386 - TSA: Macaca mulatta Mamu_537863 mRNA sequence.
JU330459 - TSA: Macaca mulatta Mamu_510562 mRNA sequence.
JV635623 - TSA: Macaca mulatta Mamu_465618 mRNA sequence.
JU327476 - TSA: Macaca mulatta Mamu_518379 mRNA sequence.
JU330348 - TSA: Macaca mulatta Mamu_517960 mRNA sequence.
EF133513 - Sus Scrofa TATA binding protein associated factor 4b (TAF4b) protein, complete cds.
BC026493 - Mus musculus TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone IMAGE:4505179), with apparent retained intron.
AK136234 - Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420488A18 product:TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, full insert sequence.
AK136225 - Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420484E20 product:TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, full insert sequence.

Pfam Domains in UCSC Genes

TAF4 at chr18:26315242-26389994
TAF4 at chr20:61953794-62000708
TAF4 at chr20:62000568-62000708
TAF4 at chr20_KI270869v1_alt:64365-111295
TAF4 at chr20_KI270869v1_alt:111155-111295