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Gencode Genes

SUPT4H1 (ENST00000225504.8) at chr17:58345178-58352201 - Homo sapiens SPT4 homolog, DSIF elongation factor subunit (SUPT4H1), transcript variant 2, non-coding RNA. (from RefSeq NR_073470)
SUPT4H1 (ENST00000581540.5) at chr17:58346016-58351661 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3QSB9)
SUPT4H1 (ENST00000581204.1) at chr17:58345912-58347611 - SPT4 homolog, DSIF elongation factor subunit (from HGNC SUPT4H1)
SUPT4H1 (ENST00000581166.5) at chr17:58345175-58352167 - SPT4 homolog, DSIF elongation factor subunit (from HGNC SUPT4H1)
SUPT4H1 (ENST00000580947.1) at chr17:58346212-58353093 - Component of the DRB sensitivity-inducing factor complex  (DSIF complex), which regulates mRNA processing and transcription  elongation by RNA polymerase II. DSIF positively regulates mRNA  capping by stimulating the mRNA guanylyltransferase activity of  RNGTT/CAP1A. DSIF also acts cooperatively with the negative  elongation factor complex (NELF complex) to enhance  transcriptional pausing at sites proximal to the promoter.  Transcriptional pausing may facilitate the assembly of an  elongation competent RNA polymerase II complex. DSIF and NELF  promote pausing by inhibition of the transcription elongation  factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at  transcription pause sites and stimulates the weak intrinsic  nuclease activity of the enzyme. Cleavage of blocked transcripts  by RNA polymerase II promotes the resumption of transcription from  the new 3' terminus and may allow repeated attempts at  transcription through natural pause sites. DSIF can also  positively regulate transcriptional elongation and is required for  the efficient activation of transcriptional elongation by the HIV-  1 nuclear transcriptional activator, Tat. DSIF acts to suppress  transcriptional pausing in transcripts derived from the HIV-1 LTR  and blocks premature release of HIV-1 transcripts at terminator  sequences. (from UniProt P63272)
SUPT4H1 (ENST00000579289.1) at chr17:58347200-58352136 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KSQ6)
SUPT4H1 (ENST00000577396.5) at chr17:58345247-58352423 - SPT4 homolog, DSIF elongation factor subunit (from HGNC SUPT4H1)
TSPOAP1-AS1 (ENST00000579527.5) at chr17:58325450-58353286 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 1, long non-coding RNA. (from RefSeq NR_038410)
TSPOAP1-AS1 (ENST00000580633.5) at chr17:58329605-58352377 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 4, long non-coding RNA. (from RefSeq NR_038413)
TSPOAP1-AS1 (ENST00000580515.5) at chr17:58328938-58352429 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 3, long non-coding RNA. (from RefSeq NR_038412)
TSPOAP1-AS1 (ENST00000580022.5) at chr17:58337308-58353719 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 5, long non-coding RNA. (from RefSeq NR_038414)
TSPOAP1-AS1 (ENST00000578025.5) at chr17:58337215-58353719 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 9, long non-coding RNA. (from RefSeq NR_038418)
NELFB (ENST00000343053.5) at chr9:137255327-137273542 - Homo sapiens negative elongation factor complex member B (NELFB), mRNA. (from RefSeq NM_015456)
SUPT6H (ENST00000347486.8) at chr17:28662198-28701735 - Homo sapiens SPT6 homolog, histone chaperone and transcription elongation factor (SUPT6H), transcript variant 1, mRNA. (from RefSeq NM_001320755)
SUPT6H (ENST00000314616.11) at chr17:28662205-28702679 - Homo sapiens SPT6 homolog, histone chaperone and transcription elongation factor (SUPT6H), transcript variant 2, mRNA. (from RefSeq NM_003170)
SUPT5H (ENST00000432763.7) at chr19:39445582-39476670 - Homo sapiens SPT5 homolog, DSIF elongation factor subunit (SUPT5H), transcript variant 5, mRNA. (from RefSeq NM_001319990)
SUPT5H (ENST00000598725.5) at chr19:39445684-39476670 - Homo sapiens SPT5 homolog, DSIF elongation factor subunit (SUPT5H), transcript variant 1, mRNA. (from RefSeq NM_003169)
SUPT5H (ENST00000402194.6) at chr19:39445546-39476666 - Homo sapiens SPT5 homolog, DSIF elongation factor subunit (SUPT5H), transcript variant 6, mRNA. (from RefSeq NM_001319991)
SUPT5H (ENST00000359191.10) at chr19:39445644-39476670 - Component of the DRB sensitivity-inducing factor complex  (DSIF complex), which regulates mRNA processing and transcription  elongation by RNA polymerase II. DSIF positively regulates mRNA  capping by stimulating the mRNA guanylyltransferase activity of  RNGTT/CAP1A. DSIF also acts cooperatively with the negative  elongation factor complex (NELF complex) to enhance  transcriptional pausing at sites proximal to the promoter.  Transcriptional pausing may facilitate the assembly of an  elongation competent RNA polymerase II complex. DSIF and NELF  promote pausing by inhibition of the transcription elongation  factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at  transcription pause sites and stimulates the weak intrinsic  nuclease activity of the enzyme. Cleavage of blocked transcripts  by RNA polymerase II promotes the resumption of transcription from  the new 3' terminus and may allow repeated attempts at  transcription through natural pause sites. DSIF can also  positively regulate transcriptional elongation and is required for  the efficient activation of transcriptional elongation by the HIV-  1 nuclear transcriptional activator, Tat. DSIF acts to suppress  transcriptional pausing in transcripts derived from the HIV-1 LTR  and blocks premature release of HIV-1 transcripts at terminator  sequences. (from UniProt O00267)
SUPT5H (ENST00000599117.5) at chr19:39441643-39476670 - Component of the DRB sensitivity-inducing factor complex  (DSIF complex), which regulates mRNA processing and transcription  elongation by RNA polymerase II. DSIF positively regulates mRNA  capping by stimulating the mRNA guanylyltransferase activity of  RNGTT/CAP1A. DSIF also acts cooperatively with the negative  elongation factor complex (NELF complex) to enhance  transcriptional pausing at sites proximal to the promoter.  Transcriptional pausing may facilitate the assembly of an  elongation competent RNA polymerase II complex. DSIF and NELF  promote pausing by inhibition of the transcription elongation  factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at  transcription pause sites and stimulates the weak intrinsic  nuclease activity of the enzyme. Cleavage of blocked transcripts  by RNA polymerase II promotes the resumption of transcription from  the new 3' terminus and may allow repeated attempts at  transcription through natural pause sites. DSIF can also  positively regulate transcriptional elongation and is required for  the efficient activation of transcriptional elongation by the HIV-  1 nuclear transcriptional activator, Tat. DSIF acts to suppress  transcriptional pausing in transcripts derived from the HIV-1 LTR  and blocks premature release of HIV-1 transcripts at terminator  sequences. (from UniProt O00267)
SUPT4H1P1 (ENST00000423067.1) at chr2:75651288-75651627 - SPT4 homolog, DSIF elongation factor subunit pseudogene (from HGNC SUPT4H1P1)
SUPT4H1P2 (ENST00000501248.2) at chr12:8512374-8512726 - SPT4 homolog, DSIF elongation factor subunit pseudogene 2 (from HGNC SUPT4H1P2)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_003168.3 at chr17:58345178-58352201
NR_073470.2 at chr17:58345178-58352201

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

SUPT4H1 at chr17:58345178-58352201

RefSeq Genes

SUPT4H1 at chr17:58345178-58352201 - (NM_003168) transcription elongation factor SPT4
SUPT4H1 at chr17:58345178-58352201 - (NR_073470) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 8 at chr17:58337202-58353727 - (NR_038417.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 6 at chr17:58337202-58353727 - (NR_038415.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 4 at chr17:58329605-58353727 - (NR_038413.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 2 at chr17:58328938-58353727 - (NR_038411.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 1 at chr17:58325450-58353727 - (NR_038410.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 3 at chr17:58328938-58353727 - (NR_038412.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 5 at chr17:58337202-58353727 - (NR_038414.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 7 at chr17:58337202-58353727 - (NR_038416.1)
TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, transcript variant 9 at chr17:58337202-58353727 - (NR_038418.1)

NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

SUPT4H1P1 at chr2:75650309-75651648

Non-Human RefSeq Genes

SUPT4H1 at chr17:58345335-58352189 - (NM_001260659) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352135 - (NM_001200872) transcription elongation factor SPT4
SUPT4H1 at chr17:58346246-58352129 - (NM_001245621) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352135 - (NM_001141871) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352144 - (NM_001292863) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352141 - (NM_001016679) transcription elongation factor SPT4
SUPT4H1 at chr17:58345320-58352218 - (NM_001135543) transcription elongation factor SPT4
SUPT4H1 at chr17:58345932-58353259 - (NM_001284797) transcription elongation factor SPT4
Supt4h1 at chr17:58346237-58352143 - (NM_001105828) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352135 - (NM_001002509) transcription elongation factor SPT4
SUPT4H1 at chr17:58346246-58352141 - (NM_001257286) transcription elongation factor SPT4
supt4h1 at chr17:58346246-58352153 - (NM_001304117) transcription elongation factor SPT4
SUPT4H1 at chr17:58345659-58352139 - (NM_001034792) transcription elongation factor SPT4
supt4h1.L at chr17:58346246-58352141 - (NM_001095737) transcription elongation factor SPT4

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

SUPT4H1 at chr17:58345178-58352201
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352201
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SUPT4H1 at chr17:58345178-58352201
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352201
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SUPT4H1 at chr17:58345175-58352167
SUPT4H1 at chr17:58345178-58352202
SUPT4H1 at chr17:58345247-58352423
SUPT4H1 at chr17:58345912-58347611
SUPT4H1 at chr17:58346016-58351661
SUPT4H1 at chr17:58346212-58353093
SUPT4H1 at chr17:58347200-58352136

Retroposed Genes V9, Including Pseudogenes

SUPT4H1 at chr2:75650309-75651648 - (NM_003168.2-3)
SUPT4H1 at chr12:8511292-8512804 - (NR_073470.1-1)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Supt4h1_41314 at chr17:58345178-58352202
Supt4h1_49814 at chr17:58345178-58352202
Supt4h1_70177 at chr17:58345178-58352202

Human Aligned mRNA Search Results

BC002802 - Homo sapiens suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:3864 IMAGE:3636217), complete cds.
CR407663 - Homo sapiens full open reading frame cDNA clone RZPDo834E017D for gene SUPT4H1, suppressor of Ty 4 homolog 1 (S. cerevisiae) complete cds, without stopcodon.
AK311986 - Homo sapiens cDNA, FLJ92259, Homo sapiens suppressor of Ty 4 homolog 1 (S. cerevisiae)(SUPT4H1), mRNA.

Human Unaligned mRNA Search Results

NR_073470 - Homo sapiens SPT4 homolog, DSIF elongation factor subunit (SUPT4H1), transcript variant 2, non-coding RNA.
NR_038418 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 9, long non-coding RNA.
NR_038411 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 2, long non-coding RNA.
NR_038414 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 5, long non-coding RNA.
NR_038412 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 3, long non-coding RNA.
NR_038410 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 1, long non-coding RNA.
NR_038413 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 4, long non-coding RNA.
NR_038415 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 6, long non-coding RNA.
NR_038417 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 8, long non-coding RNA.
NR_038416 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 7, long non-coding RNA.

Non-Human Aligned mRNA Search Results

BC168730 - Rattus norvegicus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:188814 IMAGE:6887426), complete cds.
BC024391 - Mus musculus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:36170 IMAGE:5011064), complete cds.
BC061174 - Mus musculus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:74311 IMAGE:6592996), complete cds.
BC087923 - Mus musculus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:107273 IMAGE:30308013), complete cds.
BC141092 - Mus musculus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:176053 IMAGE:9055704), complete cds.
BC103340 - Bos taurus suppressor of Ty 4 homolog 1 (S. cerevisiae), mRNA (cDNA clone MGC:127279 IMAGE:7946538), complete cds.
BT025461 - Bos taurus suppressor of Ty 4 homolog 1 (S. cerevisiae) (SUPT4H1), mRNA, complete cds.
JU336098 - TSA: Macaca mulatta Mamu_523306 mRNA sequence.
JU472450 - TSA: Macaca mulatta Mamu_376633 mRNA sequence.
JV044853 - TSA: Macaca mulatta Mamu_421052 mRNA sequence.
AB168256 - Macaca fascicularis testis cDNA clone: QtsA-10763, similar to human suppressor of Ty 4 homolog 1 (S. cerevisiae) (SUPT4H1),mRNA, RefSeq: NM_003168.1.