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UCSC Genes

SOX1 (uc001vsb.1) at chr13:112721913-112726020 - Homo sapiens SRY (sex determining region Y)-box 1 (SOX1), mRNA.
SOX21 (uc001vma.3) at chr13:95361879-95364389 - Homo sapiens SRY (sex determining region Y)-box 21 (SOX21), mRNA.
STAT3 (uc002hzl.1) at chr17:40465343-40540513 - Homo sapiens signal transducer and activator of transcription 3 (acute-phase response factor) (STAT3), transcript variant 1, mRNA.
STAT3 (uc002hzk.1) at chr17:40465343-40540513 - Homo sapiens signal transducer and activator of transcription 3 (acute-phase response factor) (STAT3), transcript variant 1, mRNA.
STAT3 (uc010wgh.1) at chr17:40465343-40540513 - Homo sapiens signal transducer and activator of transcription 3 (acute-phase response factor) (STAT3), transcript variant 1, mRNA.
STAT3 (uc002hzn.1) at chr17:40465343-40540513 - Homo sapiens signal transducer and activator of transcription 3 (acute-phase response factor) (STAT3), transcript variant 1, mRNA.
SOX13 (uc001ham.3) at chr1:204042246-204096871 - Homo sapiens SRY (sex determining region Y)-box 13 (SOX13), mRNA.
SOX11 (uc002qyj.3) at chr2:5832799-5841517 - Homo sapiens SRY (sex determining region Y)-box 11 (SOX11), mRNA.
SOX14 (uc003erm.2) at chr3:137483134-137485172 - Homo sapiens SRY (sex determining region Y)-box 14 (SOX14), mRNA.
SOX17 (uc003xsb.4) at chr8:55370495-55373456 - Homo sapiens SRY (sex determining region Y)-box 17 (SOX17), mRNA.
SOX15 (uc002ghz.1) at chr17:7491498-7493488 - Homo sapiens SRY (sex determining region Y)-box 15 (SOX15), mRNA.
SOX18 (uc002yhs.3) at chr20:62679079-62680979 - Homo sapiens SRY (sex determining region Y)-box 18 (SOX18), mRNA.
SOX12 (uc002wdh.4) at chr20:306215-310872 - Homo sapiens SRY (sex determining region Y)-box 12 (SOX12), mRNA.
SOX10 (uc003aun.1) at chr22:38368319-38380539 - Homo sapiens SRY (sex determining region Y)-box 10 (SOX10), mRNA.
SOX13 (uc010pqq.2) at chr1:204085193-204096871 - Homo sapiens SRY (sex determining region Y)-box 13 (SOX13), mRNA.
SOX13 (uc010pqp.2) at chr1:204082043-204096871 - Homo sapiens SRY (sex determining region Y)-box 13 (SOX13), mRNA.
SOX13 (uc001hal.3) at chr1:204042246-204088974 - Homo sapiens SRY (sex determining region Y)-box 13 (SOX13), mRNA.
SOX15 (uc002ghy.1) at chr17:7491498-7493390 - Homo sapiens SRY (sex determining region Y)-box 15 (SOX15), mRNA.
SOX10 (uc010gxj.3) at chr22:38379005-38380539 - Homo sapiens SRY (sex determining region Y)-box 10 (SOX10), mRNA.
SOX10 (uc003auo.1) at chr22:38368319-38383429 - Homo sapiens SRY (sex determining region Y)-box 10 (SOX10), mRNA.
POU3F3 (uc010ywg.2) at chr2:105471969-105473471 - Homo sapiens POU class 3 homeobox 3 (POU3F3), mRNA.
PAX3 (uc010fwo.3) at chr2:223066432-223163715 - Homo sapiens paired box 3 (PAX3), transcript variant PAX3, mRNA.
POU3F2 (uc003ppe.3) at chr6:99282580-99286666 - Homo sapiens POU class 3 homeobox 2 (POU3F2), mRNA.
CTBP2 (uc009yal.3) at chr10:126676418-126849103 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
CTBP2 (uc001lih.4) at chr10:126676418-126849624 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 3, mRNA.
CTBP2 (uc009yak.3) at chr10:126676418-126847285 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
CTBP2 (uc001lif.4) at chr10:126676418-126849103 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
NMI (uc002txi.2) at chr2:152126982-152146430 - Homo sapiens N-myc (and STAT) interactor (NMI), mRNA.
RET (uc001jal.3) at chr10:43572517-43625797 - Homo sapiens ret proto-oncogene (RET), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_005986.2 at chr13:112721913-112726020
NM_006941.3 at chr22:38368319-38380539
NM_003108.3 at chr2:5832799-5841517
NM_006943.3 at chr20:306215-310872
NM_005686.2 at chr1:204042246-204096871
NM_004189.3 at chr3:137483134-137485176
NM_006942.1 at chr17:7491498-7493488
NM_022454.3 at chr8:55370495-55373456
NM_018419.2 at chr20:62679079-62680979

RefSeq Genes

SOX1 at chr13:112721463-112726020 - (NM_005986) transcription factor SOX-1
SOX1-OT at chr13:112761433-112762329 - (NR_120394) 
SOX1-OT at chr13:112626624-112762329 - (NR_120392) 
SOX10 at chr22:38368319-38380562 - (NM_006941) transcription factor SOX-10
SOX11 at chr2:5832516-5841517 - (NM_003108) transcription factor SOX-11
SOX12 at chr20:306215-310872 - (NM_006943) transcription factor SOX-12
SOX13 at chr1:204042243-204096871 - (NM_005686) transcription factor SOX-13
SOX14 at chr3:137483157-137485172 - (NM_004189) transcription factor SOX-14
SOX15 at chr17:7491496-7493412 - (NM_006942) protein SOX-15
SOX17 at chr8:55370495-55373452 - (NM_022454) transcription factor SOX-17
SOX18 at chr20:62678935-62680992 - (NM_018419) transcription factor SOX-18

Non-Human RefSeq Genes

sox1 at chr13:112721973-112723148 - (NM_001164865) transcription factor SOX-1
Sox1 at chr13:112721125-112724860 - (NM_009233) transcription factor SOX-1
SOX1 at chr13:112721973-112723812 - (NM_204333) transcription factor SOX-1
sox1.S at chr13:112721973-112723818 - (NM_001095674) transcription factor Sox-1
SOX10 at chr22:38368292-38380554 - (NM_001193247) transcription factor SOX-10
sox10 at chr22:38369502-38379779 - (NM_001164871) transcription factor SOX-10
SOX10 at chr22:38369502-38379779 - (NM_204792) transcription factor SOX-10
SOX10 at chr22:38369314-38380380 - (NM_001099933) transcription factor SOX-10
sox10 at chr22:38369496-38379779 - (NM_001100221) transcription factor Sox-10
Sox10 at chr22:38369194-38380587 - (NM_019193) transcription factor SOX-10
Sox10 at chr22:38369178-38380542 - (NM_011437) transcription factor SOX-10
sox10.L at chr22:38369499-38379779 - (NM_001088889) transcription factor Sox-10
sox11 at chr2:5832845-5835165 - (NM_001173797) transcription factor SOX-11
sox11 at chr2:5832907-5835076 - (NM_001008052) transcription factor Sox-11
SOX11 at chr2:5832455-5834726 - (NM_205187) transcription factor SOX-11
sox11 at chr2:5832899-5834179 - (NM_001317084) transcription factor SOX-11
Sox11 at chr2:5832701-5834733 - (NM_053349) transcription factor SOX-11
Sox11 at chr2:5832504-5842112 - (NM_009234) transcription factor SOX-11
sox11.L at chr2:5832910-5834179 - (NM_001142362) transcription factor Sox-11-A
sox11.S at chr2:5832907-5835767 - (NM_001090856) transcription factor Sox-11-B
Sox12 at chr20:306569-307591 - (NM_001168650) transcription factor SOX-12
Sox12 at chr20:306481-309397 - (NM_011438) transcription factor SOX-12
sox12 at chr6:21594907-21596190 - (NM_001030278) transcription factor SOX-12
sox12.S at chr6:21594910-21596190 - (NM_001085576) transcription factor Sox-12
Sox13 at chr1:204042477-204096804 - (NM_001105952) transcription factor SOX-13
Sox13 at chr1:204042477-204096804 - (NM_011439) transcription factor SOX-13
sox13 at chr1:204083652-204095262 - (NM_001017004) transcription factor Sox-13
sox13.S at chr1:204085634-204095262 - (NM_001087769) transcription factor Sox-13
SOX14 at chr3:137483134-137485172 - (NM_001194657) transcription factor SOX-14
SOX14 at chr3:137483627-137484349 - (NM_001163781) transcription factor SOX-14
sox14 at chr3:137483627-137484349 - (NM_001164872) transcription factor SOX-14
sox14 at chr13:112722126-112722378 - (NM_001164872) transcription factor SOX-14
Sox14 at chr3:137483254-137485170 - (NM_001106850) transcription factor SOX-14
sox14 at chr3:137483624-137484349 - (NM_001100233) transcription factor Sox-14
SOX14 at chr3:137483601-137484355 - (NM_204761) transcription factor SOX-14
SOX14 at chr13:112722118-112722377 - (NM_204761) transcription factor SOX-14
sox14 at chr3:137483627-137484349 - (NM_001037680) transcription factor Sox-14
Sox14 at chr3:137483144-137485180 - (NM_011440) transcription factor SOX-14
SOX14 at chr3:137483157-137485172 - (NM_001287719) transcription factor SOX-14
sox14.S at chr3:137483627-137484349 - (NM_001172214) transcription factor Sox-14
Sox15 at chr17:7489274-7492758 - (NM_001108830) protein SOX-15
SOX15 at chr17:7491585-7492997 - (NM_001192075) protein SOX-15
Sox15 at chr17:7491682-7493031 - (NM_009235) protein SOX-15
SOX17 at chr8:55370497-55372931 - (NM_001283545) transcription factor SOX-17
sox17 at chr8:55370699-55372543 - (NM_001164873) transcription factor SOX-17
SOX17 at chr8:55370696-55372555 - (NM_001039326) transcription factor SOX-17
Sox17 at chr8:55370271-55372732 - (NM_001107902) transcription factor SOX-17
SOX17 at chr8:55370699-55372555 - (NM_001206251) transcription factor SOX-17
Sox17 at chr8:55366671-55372732 - (NM_001289464) transcription factor SOX-17 isoform a
Sox17 at chr8:55366671-55372732 - (NM_001289465) transcription factor SOX-17 isoform b
Sox17 at chr8:55366671-55372732 - (NM_001289467) transcription factor SOX-17 isoform c
Sox17 at chr8:55366671-55372732 - (NM_011441) transcription factor SOX-17 isoform a
Sox17 at chr8:55366671-55372732 - (NM_001289466) transcription factor SOX-17 isoform b
sox17a at chr8:55370699-55372546 - (NM_204094) transcription factor Sox-17-alpha
sox17a.L at chr8:55370699-55372546 - (NM_001088162) transcription factor Sox-17-alpha-A
sox17a.S at chr8:55370879-55372546 - (NM_001089667) transcription factor Sox-17-alpha-B
SOX18 at chr20:62678938-62680887 - (NM_001075789) transcription factor SOX-18
SOX18 at chr20:62679516-62680659 - (NM_204309) transcription factor SOX-18
Sox18 at chr20:62679518-62680887 - (NM_001024781) transcription factor SOX-18
Sox18 at chr20:62679518-62680887 - (NM_009236) transcription factor SOX-18
sox18.L at chr20:62679519-62680880 - (NM_001088633) transcription factor Sox-18A
sox1a at chr13:112721973-112723148 - (NM_001002483) transcription factor Sox-1a
sox1b at chr13:112721973-112723148 - (NM_001037662) transcription factor Sox-1b

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SOX1 at chr13:112721463-112726020

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SOX1 at chr13:112721463-112726020

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SOX1 at chr13:112721961-112724802

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SOX1 at chr13:112721961-112724802

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SOX1 at chr13:112721961-112724802

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SOX1 at chr13:112721961-112724802

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SOX1 at chr13:112721961-112724802

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SOX1 at chr13:112721961-112724802

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SOX1 at chr13:112721961-112724802

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SOX1 at chr13:112721961-112724802

Basic Gene Annotation Set from GENCODE Version 19

SOX1 at chr13:112721913-112726020

Comprehensive Gene Annotation Set from GENCODE Version 19

SOX1 at chr13:112721913-112726020

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SOX1 at chr13:112721913-112726020

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SOX1 at chr13:112721913-112726020

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SOX1 at chr13:112721913-112726020

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SOX1 at chr13:112721913-112726020

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

SOX1 at chr13:112721913-112726020

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

SOX1 at chr13:112721913-112726020

Retroposed Genes V5, Including Pseudogenes

SOX15_HUMAN at chr11:128750154-128750564 - (AJ006222.1-1)
SOX15 at chr11:128750154-128750564 - (AJ006222.1-1)
SOX15 at chr11:128750154-128750564 - (AJ006222.1-1)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Sox10_44160 at chr22:38368319-38380539
Sox10_79577 at chr22:38368319-38380539
Sox11_VG12202 at chr2:5832799-5841517
Sox12_VG13856 at chr20:306239-310868
Sox13_41380 at chr1:204042246-204096871
Sox13_41381 at chr1:204042246-204096871
Sox13_41382 at chr1:204042246-204096871
Sox15_VG13857 at chr17:7491498-7493488
Sox17_45249 at chr8:55370495-55373456
Sox17_66774 at chr8:55370495-55373456
Sox17_70403 at chr8:55370495-55373456
Sox17_VG17509 at chr8:55370495-55373456
Sox18_VG12788 at chr20:62679079-62680979

Human Aligned mRNA Search Results

BC072003 - Homo sapiens SRY (sex determining region Y)-box 15, mRNA (cDNA clone MGC:88706 IMAGE:4653140), complete cds.
BC067361 - Homo sapiens SRY (sex determining region Y)-box 12, mRNA (cDNA clone MGC:71161 IMAGE:6480102), complete cds.
BC030209 - Homo sapiens SRY (sex determining region Y)-box 17, mRNA (cDNA clone IMAGE:5220550), partial cds.
BC111365 - Homo sapiens SRY (sex determining region Y)-box 17, mRNA (cDNA clone IMAGE:30928303), partial cds.
BC111770 - Homo sapiens SRY (sex determining region Y)-box 17, mRNA (cDNA clone IMAGE:40025144), complete cds.
BC025789 - Homo sapiens SRY (sex determining region Y)-box 11, mRNA (cDNA clone IMAGE:5201591), partial cds.
AJ243896 - Homo sapiens mRNA for SOX18 protein.
AJ001183 - Homo sapiens mRNA for Sox10 protein.
AB073988 - Homo sapiens mRNA for SRY-related HMG-box transcription factor SOX17, complete cds.
AB028641 - Homo sapiens mRNA for SOX11, complete cds.
BC106729 - Homo sapiens SRY (sex determining region Y)-box 14, mRNA (cDNA clone MGC:119898 IMAGE:40015392), complete cds.
BC106730 - Homo sapiens SRY (sex determining region Y)-box 14, mRNA (cDNA clone MGC:119899 IMAGE:40015393), complete cds.
BC000985 - Homo sapiens SRY (sex determining region Y)-box 15, mRNA (cDNA clone MGC:5138 IMAGE:3447385), complete cds.
AB033888 - Homo sapiens SOX18 mRNA, complete cds.
AF270652 - Homo sapiens Sry-related HMG-box protein (SOX18) mRNA, complete cds.
BC038590 - Homo sapiens SRY (sex determining region Y)-box 18, mRNA (cDNA clone MGC:46062 IMAGE:5589289), complete cds.
BC073971 - Homo sapiens SRY (sex determining region Y)-box 18, mRNA (cDNA clone MGC:87946 IMAGE:6183010), complete cds.
BC111390 - Homo sapiens SRY (sex determining region Y)-box 18, mRNA (cDNA clone MGC:102793 IMAGE:5751646), complete cds.
AF116571 - Homo sapiens SRY-like DNA binding protein (SOX13) mRNA, complete cds.
BC106038 - Homo sapiens SRY (sex determining region Y)-box 13, mRNA (cDNA clone MGC:117216 IMAGE:6502746), complete cds.
BC002824 - Homo sapiens SRY (sex determining region Y)-box 10, mRNA (cDNA clone MGC:3510 IMAGE:3635492), complete cds.
BC007595 - Homo sapiens SRY (sex determining region Y)-box 10, mRNA (cDNA clone MGC:15649 IMAGE:3346551), complete cds.
CR456584 - Homo sapiens SOX10 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SOX10).
CR536571 - Homo sapiens full open reading frame cDNA clone RZPDo834E1122D for gene SOX10, SRY (sex determining region Y)-box 10; complete cds, incl. stopcodon.
AK314127 - Homo sapiens cDNA, FLJ94824, Homo sapiens SRY (sex determining region Y)-box 14 (SOX14), mRNA.

Human Unaligned mRNA Search Results

NR_120394 - Homo sapiens SOX1 overlapping transcript (SOX1-OT), transcript variant 2, long non-coding RNA.
NR_120392 - Homo sapiens SOX1 overlapping transcript (SOX1-OT), transcript variant 1, long non-coding RNA.
NR_026832 - Homo sapiens sciatic injury induced lincRNA upregulator of SOX11 (SILC1), long non-coding RNA.

Ensembl Genes

SOX14 at chr3:137483579-137484396 - (ENST00000306087)
SOX10 at chr22:38373930-38380353 - (ENST00000427770)
SOX10 at chr22:38368307-38383429 - (ENST00000360880)
SOX18 at chr20:62679076-62680994 - (ENST00000340356)
SOX12 at chr20:306207-309181 - (ENST00000544632)
SOX15 at chr17:7492317-7493409 - (ENST00000570788)
SOX15 at chr17:7491496-7493488 - (ENST00000250055)
SOX13 at chr1:204091514-204092857 - (ENST00000525258)
SOX13 at chr1:204085193-204095280 - (ENST00000272193)
SOX13 at chr1:204043154-204082216 - (ENST00000525442)
SOX13 at chr1:204042284-204086286 - (ENST00000530882)
SOX13 at chr1:204042243-204088987 - (ENST00000367203)
QSOX1 at chr1:180124032-180167169 - (ENST00000367600)
QSOX1 at chr1:180123969-180173165 - (ENST00000367602)
QSOX1 at chr1:180124005-180158809 - (ENST00000392029)
QSOX1 at chr1:180165817-180167151 - (ENST00000443059)
SOX13 at chr1:204042281-204083698 - (ENST00000534185)
SOX13 at chr1:204042732-204096863 - (ENST00000367204)
SOX13 at chr1:204047257-204085755 - (ENST00000528591)
SOX13 at chr1:204085635-204092045 - (ENST00000480326)
SOX1 at chr13:112721913-112726020 - (ENST00000330949)
SOX15 at chr17:7491496-7493390 - (ENST00000538513)
SOX11 at chr2:5832799-5841516 - (ENST00000322002)
SOX12 at chr20:306239-310865 - (ENST00000342665)
SOX10 at chr22:38366693-38379421 - (ENST00000446929)
SOX10 at chr22:38368307-38380544 - (ENST00000396884)
SOX10 at chr22:38374089-38380415 - (ENST00000470555)
SOX17 at chr8:55370495-55373448 - (ENST00000297316)

Vega Protein-Coding Annotations

OTTHUMT00000045817 at chr13:112721961-112724802
OTTHUMT00000313877 at chr22:38366693-38379421
OTTHUMT00000313875 at chr22:38368307-38380544
OTTHUMT00000313874 at chr22:38368307-38383429
OTTHUMT00000313876 at chr22:38373930-38380353
OTTHUMT00000321729 at chr22:38374089-38380415
OTTHUMT00000206698 at chr2:5832799-5841517
OTTHUMT00000077435 at chr20:306045-310868
OTTHUMT00000087880 at chr1:204042243-204088987
OTTHUMT00000087881 at chr1:204042732-204096863
OTTHUMT00000098773 at chr1:204085635-204092045
OTTHUMT00000357182 at chr3:137483126-137485180
OTTHUMT00000378526 at chr8:55370495-55373448
OTTHUMT00000378527 at chr8:55370529-55372853
OTTHUMT00000080265 at chr20:62679076-62680994