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Gencode Genes

SNRNP40 (ENST00000263694.9) at chr1:31259568-31296788 - Homo sapiens small nuclear ribonucleoprotein U5 subunit 40 (SNRNP40), mRNA. (from RefSeq NM_004814)
SNRNP40 (ENST00000491106.1) at chr1:31259786-31261077 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
SNRNP40 (ENST00000489853.1) at chr1:31259674-31282483 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
SNRNP40 (ENST00000486941.1) at chr1:31259673-31261822 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
SNRNP40 (ENST00000474025.1) at chr1:31271208-31289419 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
SNRNP40 (ENST00000463988.1) at chr1:31292844-31296782 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
SNRNP40 (ENST00000373720.3) at chr1:31259710-31269666 - small nuclear ribonucleoprotein U5 subunit 40 (from HGNC SNRNP40)
PRPF8 (ENST00000572621.5) at chr17:1650631-1684837 - Central component of the spliceosome, which may play a  role in aligning the pre-mRNA 5'- and 3'-exons for ligation.  Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B  spliceosomes and 3'-splice sites in C spliceosomes. (from UniProt Q6P2Q9)
PRPF8 (ENST00000634039.1) at chr17_KI270861v1_alt:80659-114865 - Central component of the spliceosome, which may play a  role in aligning the pre-mRNA 5'- and 3'-exons for ligation.  Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B  spliceosomes and 3'-splice sites in C spliceosomes. (from UniProt Q6P2Q9)
PRPF8 (ENST00000614672.2) at chr17_KI270861v1_alt:80657-114910 - Homo sapiens pre-mRNA processing factor 8 (PRPF8), mRNA. (from RefSeq NM_006445)
PRPF8 (ENST00000304992.11) at chr17:1650629-1684867 - Homo sapiens pre-mRNA processing factor 8 (PRPF8), mRNA. (from RefSeq NM_006445)
CUL4B (ENST00000404115.7) at chrX:120526641-120575794 - Homo sapiens cullin 4B (CUL4B), transcript variant 1, mRNA. (from RefSeq NM_003588)
CUL4A (ENST00000451881.5) at chr13:113208772-113265077 - Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA. (from RefSeq NM_003589)
CUL4A (ENST00000375441.7) at chr13:113208193-113265072 - Homo sapiens cullin 4A (CUL4A), transcript variant 3, mRNA. (from RefSeq NM_001278513)
CUL4A (ENST00000375440.9) at chr13:113209613-113267108 - Homo sapiens cullin 4A (CUL4A), transcript variant 1, mRNA. (from RefSeq NM_001008895)
CUL4B (ENST00000371322.9) at chrX:120524609-120560700 - Homo sapiens cullin 4B (CUL4B), transcript variant 4, mRNA. (from RefSeq NM_001369145)
CUL4A (ENST00000617546.4) at chr13:113208836-113267108 - Homo sapiens cullin 4A (CUL4A), transcript variant 9, mRNA. (from RefSeq NM_001354942)
DDB1 (ENST00000301764.11) at chr11:61299451-61333366 - Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. (from RefSeq NM_001923)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_004814.2 at chr1:31259568-31296797

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

SNRNP40 at chr1:31259568-31296788

RefSeq Genes

SNRNP40 at chr1:31259568-31296788 - (NM_004814) U5 small nuclear ribonucleoprotein 40 kDa protein

Non-Human RefSeq Genes

Snrnp40 at chr3:156175875-156176225 - (NM_001162306) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31259672-31296815 - (NM_001283894) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31260072-31296763 - (NM_001195650) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31259756-31293354 - (NM_001030373) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31260072-31293348 - (NM_001200470) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31259568-31296773 - (NM_001131243) U5 small nuclear ribonucleoprotein 40 kDa protein
Snrnp40 at chr1:31259660-31296790 - (NM_001134556) U5 small nuclear ribonucleoprotein 40 kDa protein
Snrnp40 at chr1:31259842-31296823 - (NM_025645) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31259675-31296772 - (NM_001046382) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31260072-31293348 - (NM_200322) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40.L at chr1:31260072-31293354 - (NM_001086355) small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog
snrnp40.S at chr1:31260072-31293354 - (NM_001087243) small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SNRNP40 at chr1:31259568-31296788
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SNRNP40 at chr1:31259568-31296788
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259710-31269666

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SNRNP40 at chr1:31259568-31296770
SNRNP40 at chr1:31259673-31261822
SNRNP40 at chr1:31259674-31282483
SNRNP40 at chr1:31259710-31269666
SNRNP40 at chr1:31259786-31261077
SNRNP40 at chr1:31271208-31289419
SNRNP40 at chr1:31292844-31296782

Retroposed Genes V9, Including Pseudogenes

SNRNP40 at chr3:156175179-156176923 - (NM_004814.2-2)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Snrnp40_46883 at chr1:31259568-31296797

BC001494 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1489  100.0%          1     -  31259678  31296773  BC001494     1  1489  1522

Non-Human Aligned mRNA Search Results

BC051783 - Danio rerio small nuclear ribonucleoprotein 40 (U5), mRNA (cDNA clone MGC:56312 IMAGE:5603337), complete cds.
BC058365 - Mus musculus small nuclear ribonucleoprotein 40 (U5), mRNA (cDNA clone MGC:66747 IMAGE:5714866), complete cds.
HQ890108 - Equus caballus clone 07_c01 u5 small nuclear ribonucleoprotein 40 kda-like protein (SNRNP40) mRNA, partial cds.
BC105383 - Bos taurus small nuclear ribonucleoprotein 40kDa (U5), mRNA (cDNA clone MGC:128126 IMAGE:7962728), complete cds.
JU337164 - TSA: Macaca mulatta Mamu_509115 mRNA sequence.
JU477897 - TSA: Macaca mulatta Mamu_376158 mRNA sequence.
JV048740 - TSA: Macaca mulatta Mamu_421923 mRNA sequence.