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UCSC Genes

SNRNP40 (uc009vtt.3) at chr1:31732415-31742513 - Homo sapiens small nuclear ribonucleoprotein 40kDa (U5) (SNRNP40), mRNA.
SNRNP40 (uc001bso.3) at chr1:31732415-31769644 - Homo sapiens small nuclear ribonucleoprotein 40kDa (U5) (SNRNP40), mRNA.
SNRNP40 (uc010oge.2) at chr1:31732415-31769644 - Homo sapiens small nuclear ribonucleoprotein 40kDa (U5) (SNRNP40), mRNA.
PRPF8 (uc002fte.3) at chr17:1553923-1588176 - Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8), mRNA.
CUL4B (uc004esw.3) at chrX:119658446-119709684 - Homo sapiens cullin 4B (CUL4B), transcript variant 1, mRNA.
CUL4B (uc010nqq.3) at chrX:119658446-119680471 - Homo sapiens cullin 4B (CUL4B), transcript variant 2, mRNA.
CUL4A (uc021rmv.1) at chr13:113863931-113919392 - Homo sapiens cullin 4A (CUL4A), transcript variant 1, mRNA.
CUL4A (uc021rmu.1) at chr13:113863086-113919392 - Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA.
CUL4A (uc010tjz.2) at chr13:113891045-113919392 - Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA.
CUL4A (uc010agu.3) at chr13:113882290-113919392 - Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA.
DDB1 (uc001nrc.5) at chr11:61066919-61100684 - Homo sapiens damage-specific DNA binding protein 1, 127kDa (DDB1), mRNA.
DDB1 (uc010rlf.1) at chr11:61069729-61110047 - Homo sapiens damage-specific DNA binding protein 1, 127kDa (DDB1), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_004814.2 at chr1:31732415-31769644

RefSeq Genes

SNRNP40 at chr1:31732415-31769635 - (NM_004814) U5 small nuclear ribonucleoprotein 40 kDa protein

Non-Human RefSeq Genes

Snrnp40 at chr3:155893664-155894014 - (NM_001162306) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31732519-31769662 - (NM_001283894) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31732919-31769610 - (NM_001195650) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31732603-31766201 - (NM_001030373) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31732919-31766195 - (NM_001200470) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31732415-31769620 - (NM_001131243) U5 small nuclear ribonucleoprotein 40 kDa protein
Snrnp40 at chr1:31732507-31769637 - (NM_001134556) U5 small nuclear ribonucleoprotein 40 kDa protein
Snrnp40 at chr1:31732605-31769670 - (NM_025645) U5 small nuclear ribonucleoprotein 40 kDa protein
SNRNP40 at chr1:31732522-31769619 - (NM_001046382) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40 at chr1:31734377-31766195 - (NM_200322) U5 small nuclear ribonucleoprotein 40 kDa protein
snrnp40.L at chr1:31732921-31766201 - (NM_001086355) small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog
snrnp40.S at chr1:31732919-31766201 - (NM_001087243) small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SNRNP40 at chr1:31732415-31769635
SNRNP40 at chr1:31732557-31742513

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SNRNP40 at chr1:31732415-31769635
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732557-31742513

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732557-31742513

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732557-31742513

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SNRNP40 at chr1:31732415-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from GENCODE Version 19

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732796-31769662

Comprehensive Gene Annotation Set from GENCODE Version 19

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31732796-31769662
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732796-31769662

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31732796-31769662
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732796-31769662

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31732796-31769662
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732796-31769662

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

SNRNP40 at chr1:31732417-31769617
SNRNP40 at chr1:31732520-31734669
SNRNP40 at chr1:31732521-31755330
SNRNP40 at chr1:31732557-31742513
SNRNP40 at chr1:31732633-31733924
SNRNP40 at chr1:31732796-31769662
SNRNP40 at chr1:31744055-31762266
SNRNP40 at chr1:31765691-31769629

Retroposed Genes V5, Including Pseudogenes

SNRNP40 at chr3:155892968-155894712 - (NM_004814.2-2)
SNRNP40 at chr3:155892968-155894712 - (NM_004814.2-2)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Snrnp40_46883 at chr1:31732415-31769644

BC001494 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1489  100.0%          1     -  31732525  31769620  BC001494     1  1489  1522

Non-Human Aligned mRNA Search Results

BC051783 - Danio rerio small nuclear ribonucleoprotein 40 (U5), mRNA (cDNA clone MGC:56312 IMAGE:5603337), complete cds.
BC058365 - Mus musculus small nuclear ribonucleoprotein 40 (U5), mRNA (cDNA clone MGC:66747 IMAGE:5714866), complete cds.
HQ890108 - Equus caballus clone 07_c01 u5 small nuclear ribonucleoprotein 40 kda-like protein (SNRNP40) mRNA, partial cds.
BC105383 - Bos taurus small nuclear ribonucleoprotein 40kDa (U5), mRNA (cDNA clone MGC:128126 IMAGE:7962728), complete cds.
JU337164 - TSA: Macaca mulatta Mamu_509115 mRNA sequence.
JU477897 - TSA: Macaca mulatta Mamu_376158 mRNA sequence.
JV048740 - TSA: Macaca mulatta Mamu_421923 mRNA sequence.

Ensembl Genes

SNRNP40 at chr1:31744055-31762266 - (ENST00000474025)
SNRNP40 at chr1:31732633-31733924 - (ENST00000491106)
SNRNP40 at chr1:31732521-31755330 - (ENST00000489853)
SNRNP40 at chr1:31732417-31769617 - (ENST00000263694)
SNRNP40 at chr1:31732520-31734669 - (ENST00000486941)
SNRNP40 at chr1:31732557-31742513 - (ENST00000373720)
SNRNP40 at chr1:31732796-31769662 - (ENST00000446633)
SNRNP40 at chr1:31765691-31769629 - (ENST00000463988)

Vega Protein-Coding Annotations

OTTHUMT00000010657 at chr1:31732417-31769617
OTTHUMT00000010661 at chr1:31732520-31734669
OTTHUMT00000010659 at chr1:31732521-31755330
OTTHUMT00000010658 at chr1:31732557-31742513
OTTHUMT00000010660 at chr1:31732633-31733924
OTTHUMT00000010662 at chr1:31744055-31762266
OTTHUMT00000010663 at chr1:31765691-31769629