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Gencode Genes

SMARCAD1 (ENST00000354268.8) at chr4:94208047-94291292 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 3, mRNA. (from RefSeq NM_020159)
SMARCAD1 (ENST00000514232.1) at chr4:94270567-94274921 - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (from HGNC SMARCAD1)
SMARCAD1 (ENST00000510105.5) at chr4:94207866-94277159 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt D6RAY8)
SMARCAD1 (ENST00000509418.1) at chr4:94253294-94289704 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 4, mRNA. (from RefSeq NM_001254949)
SMARCAD1 (ENST00000506089.1) at chr4:94264528-94273700 - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (from HGNC SMARCAD1)
SMARCAD1 (ENST00000457823.6) at chr4:94207845-94290821 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 1, mRNA. (from RefSeq NM_001128429)
SMARCAD1 (ENST00000394961.6) at chr4:94208084-94289899 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA. (from RefSeq NR_045644)
SMARCAD1 (ENST00000359052.8) at chr4:94207611-94291290 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 2, mRNA. (from RefSeq NM_001128430)
MSH2 (ENST00000233146.6) at chr2:47402969-47483228 - Homo sapiens mutS homolog 2 (MSH2), transcript variant 1, mRNA. (from RefSeq NM_000251)
MSH2 (ENST00000543555.5) at chr2:47403067-47483227 - Homo sapiens mutS homolog 2 (MSH2), transcript variant 2, mRNA. (from RefSeq NM_001258281)
PCNA (ENST00000379160.3) at chr20:5114953-5126626 - Homo sapiens proliferating cell nuclear antigen (PCNA), transcript variant 1, mRNA. (from RefSeq NM_002592)
PCNA (ENST00000379143.10) at chr20:5114953-5119958 - Homo sapiens proliferating cell nuclear antigen (PCNA), transcript variant 2, mRNA. (from RefSeq NM_182649)
TRIM28 (ENST00000253024.10) at chr19:58544064-58550715 - Homo sapiens tripartite motif containing 28 (TRIM28), mRNA. (from RefSeq NM_005762)
TRIM28 (ENST00000341753.10) at chr19:58544473-58550715 - Nuclear corepressor for KRAB domain-containing zinc  finger proteins (KRAB-ZFPs). Mediates gene silencing by recruiting  CHD3, a subunit of the nucleosome remodeling and deacetylation  (NuRD) complex, and SETDB1 (which specifically methylates histone  H3 at 'Lys-9' (H3K9me)) to the promoter regions of KRAB target  genes. Enhances transcriptional repression by coordinating the  increase in H3K9me, the decrease in histone H3 'Lys-9 and 'Lys-14'  acetylation (H3K9ac and H3K14ac, respectively) and the disposition  of HP1 proteins to silence gene expression. Recruitment of SETDB1  induces heterochromatinization. May play a role as a coactivator  for CEBPB and NR3C1 in the transcriptional activation of ORM1.  Also corepressor for ERBB4. Inhibits E2F1 activity by stimulating  E2F1-HDAC1 complex formation and inhibiting E2F1 acetylation. May  serve as a partial backup to prevent E2F1-mediated apoptosis in  the absence of RB1. Important regulator of CDKN1A/p21(CIP1). Has  E3 SUMO-protein ligase activity toward itself via its PHD-type  zinc finger. Also specifically sumoylates IRF7, thereby inhibiting  its transactivation activity. Ubiquitinates p53/TP53 leading to  its proteosomal degradation; the function is enhanced by MAGEC2  and MAGEA2, and possibly MAGEA3 and MAGEA6. (from UniProt Q13263)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001128430.1 at chr4:94207608-94291292
NM_020159.4 at chr4:94207845-94291292
NM_001128429.2 at chr4:94207845-94291292
NR_045644.1 at chr4:94208084-94291292
NM_001254949.1 at chr4:94253294-94291292

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XR_001741292.2 at chr4:94207608-94278733
XM_017008463.2 at chr4:94207624-94291292
XM_017008464.2 at chr4:94207631-94290821
XM_024454154.1 at chr4:94207859-94290821
XR_938765.2 at chr4:94207865-94278733
XM_017008465.2 at chr4:94207924-94290821

RefSeq Genes

SMARCAD1 at chr4:94207865-94291292 - (NM_001128429) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform a
SMARCAD1 at chr4:94207608-94291292 - (NM_001128430) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform a
SMARCAD1 at chr4:94207865-94291292 - (NM_020159) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform b
SMARCAD1 at chr4:94253309-94291292 - (NM_001254949) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform c
SMARCAD1 at chr4:94208084-94291292 - (NR_045644) 

Non-Human RefSeq Genes

Smarcad1 at chr4:94208377-94291291 - (NM_001253392) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 2
SMARCAD1 at chr4:94207617-94291300 - (NM_001205432) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
Smarcad1 at chr4:94207593-94208586 - (NM_001355249) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 3
Smarcad1 at chr4:94207593-94291291 - (NM_001355250) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 1
Smarcad1 at chr4:94207593-94208586 - (NM_001355248) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 3
Smarcad1 at chr4:94207593-94291291 - (NM_007958) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 1
smarcad1 at chr4:94252810-94289534 - (NM_001015697) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
Smarcad1 at chr4:94208373-94291291 - (NM_001107864) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
SMARCAD1 at chr4:94207865-94291292 - (NM_001374139) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
smarcad1a at chr4:94270729-94285059 - (NM_001020774) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A
smarcad1b at chr4:94252891-94283310 - (NM_001353868) sWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94253294-94289704

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SMARCAD1 at chr4:94207611-94291290
SMARCAD1 at chr4:94207845-94290821
SMARCAD1 at chr4:94207866-94277159
SMARCAD1 at chr4:94208047-94291292
SMARCAD1 at chr4:94208084-94289899
SMARCAD1 at chr4:94253294-94289704
SMARCAD1 at chr4:94264528-94273700
SMARCAD1 at chr4:94270567-94274921

International Knockout Mouse Consortium Genes Mapped to Human Genome

Smarcad1_71585 at chr4:94207608-94291292
Smarcad1_93658 at chr4:94207608-94291292

Human Aligned mRNA Search Results

BC017953 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone IMAGE:4592233), partial cds.
AY008271 - Homo sapiens helicase SMARCAD1 mRNA, complete cds.
BC045534 - Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone MGC:57132 IMAGE:5267669), complete cds.

Non-Human Aligned mRNA Search Results

BC042442 - Mus musculus SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone MGC:25561 IMAGE:3980726), complete cds.
BC089242 - Xenopus tropicalis SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone MGC:108253 IMAGE:7017612), complete cds.
LC183876 - Xenopus laevis smarcad1b mRNA for SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, isoform b, complete cds.
LC183875 - Xenopus laevis smarcad1a mRNA for SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, isoform a, complete cds.
JU335531 - TSA: Macaca mulatta Mamu_524935 mRNA sequence.
JU476462 - TSA: Macaca mulatta Mamu_363232 mRNA sequence.
JV043742 - TSA: Macaca mulatta Mamu_408407 mRNA sequence.
AB169326 - Macaca fascicularis testis cDNA, clone: QtsA-19046, similar to human SWI/SNF-related, matrix-associated actin-dependentregulator of chromatin, subfamily a, containing DEAD/Hbox 1 (SMARCAD1), mRNA, RefSeq: NM_020159.1.