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UCSC Genes

SLC9A1 (uc001bnm.4) at chr1:27425300-27481621 - Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 1, mRNA.
SLC9A1 (uc010ofk.3) at chr1:27425300-27481621 - Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA.
SLC9A1 (uc001bnn.3) at chr1:27431942-27481621 - Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 1, mRNA.
SLC9A1 (uc001bnl.3) at chr1:27425300-27430513 - Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA.
CHP2 (uc002dmb.1) at chr16:23765948-23770256 - Homo sapiens calcineurin-like EF-hand protein 2 (CHP2), mRNA.
TESC (uc001twh.3) at chr12:117476728-117537251 - Homo sapiens tescalcin (TESC), transcript variant 1, mRNA.
CHP1 (uc001znl.3) at chr15:41523437-41574083 - Homo sapiens calcineurin-like EF-hand protein 1 (CHP1), mRNA.
SLC9C2 (uc009wwe.2) at chr1:173469604-173545899 - Homo sapiens solute carrier family 9, member C2 (putative) (SLC9C2), mRNA.
SLC9C2 (uc001giz.2) at chr1:173469604-173572233 - Homo sapiens solute carrier family 9, member C2 (putative) (SLC9C2), mRNA.
SLC9C1 (uc010hqc.3) at chr3:111859752-112013074 - Homo sapiens solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 (SLC9C1), mRNA.
SLC9C1 (uc003dyu.3) at chr3:111859752-112013074 - Homo sapiens solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 (SLC9C1), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_003047.4 at chr1:27425300-27481621
NR_046474.1 at chr1:27425300-27481621

RefSeq Genes

SLC9A1 at chr1:27425300-27481616 - (NM_003047) sodium/hydrogen exchanger 1
SLC9A1 at chr1:27425300-27481616 - (NR_046474) 

Non-Human RefSeq Genes

slc9a1 at chr1:27428292-27440778 - (NM_001124695) Na(+)/H(+) exchanger beta
SLC9A1 at chr1:27425306-27481541 - (NM_001287028) sodium/hydrogen exchanger 1
SLC9A1 at chr1:27426610-27480989 - (NM_001007103) sodium/hydrogen exchanger 1
SLC9A1 at chr1:27425998-27481150 - (NM_174833) sodium/hydrogen exchanger 1
SLC9A1 at chr1:27426798-27480576 - (NM_001044643) sodium/hydrogen exchanger 1 precursor
SLC9A1 at chr1:27425322-27481092 - (NM_001101721) sodium/hydrogen exchanger 1
Slc9a1 at chr1:27425302-27481528 - (NM_012652) sodium/hydrogen exchanger 1
Slc9a1 at chr1:27425301-27481514 - (NM_016981) sodium/hydrogen exchanger 1 isoform 1
Slc9a1 at chr1:27425301-27481514 - (NM_001358455) sodium/hydrogen exchanger 1 isoform 2
Slc9a1 at chr1:27426798-27480821 - (NM_001246753) sodium/hydrogen exchanger 1
slc9a1.S at chr1:27426837-27440778 - (NM_001088084) solute carrier family 9 member 1 S homeolog
slc9a1b at chr1:27429163-27480561 - (NM_001113480) sodium/hydrogen exchanger 1 precursor

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SLC9A1 at chr1:27425300-27481616
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SLC9A1 at chr1:27425300-27481616
SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SLC9A1 at chr1:27425300-27481616
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SLC9A1 at chr1:27425300-27481616
SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from GENCODE Version 19

SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from GENCODE Version 19

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27431942-27481089

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

SLC9A1 at chr1:27425306-27430513
SLC9A1 at chr1:27425306-27481401
SLC9A1 at chr1:27425307-27426173
SLC9A1 at chr1:27426578-27480973
SLC9A1 at chr1:27426836-27429286
SLC9A1 at chr1:27431942-27481089
SLC9A1 at chr1:27440724-27493472

International Knockout Mouse Consortium Genes Mapped to Human Genome

Slc9a10_41911 at chr3:111859752-112013074
Slc9a10_70041 at chr3:111859752-112013074
Slc9a10_75887 at chr3:111859752-112013074
Slc9a10_VG15822 at chr3:111859752-112013074
Slc9a1_25959 at chr1:27425300-27481451
Slc9a1_25960 at chr1:27425300-27481451
Slc9a1_74935 at chr1:27425300-27481451

Human Aligned mRNA Search Results

BC044801 - Homo sapiens solute carrier family 9, member 10, mRNA (cDNA clone MGC:42712 IMAGE:4827529), complete cds.
BC012121 - Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:20164 IMAGE:4652523), complete cds.
BC042592 - Homo sapiens solute carrier family 9, member 11, mRNA (cDNA clone MGC:43026 IMAGE:4838901), complete cds.
AK302731 - Homo sapiens cDNA FLJ50303 complete cds, weakly similar to Mus musculus solute carrier family 9, isoform 10 (Slc9a10), mRNA.
AK128104 - Homo sapiens cDNA FLJ46225 fis, clone TESTI4014415, weakly similar to Mus musculus solute carrier family 9, isoform 10 (Slc9a10), mRNA.
AK314190 - Homo sapiens cDNA, FLJ94915, highly similar to Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive) (SLC9A1), mRNA.

Non-Human Aligned mRNA Search Results

BC004687 - Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone IMAGE:3500839), partial cds.
BC052708 - Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:64648 IMAGE:5702902), complete cds.
BC168405 - Synthetic construct Mus musculus clone IMAGE:100068374, MGC:195918 solute carrier family 9, member 10 (Slc9a10) mRNA, encodes complete protein.
BC051431 - Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:58902 IMAGE:6529306), complete cds.
AB200332 - Takifugu obscurus Slc9a1 mRNA for NHE1, complete cds.
FJ982778 - Misgurnus anguillicaudatus sodium/hydrogen exchanger isoform 1 (Slc9a1) mRNA, partial cds.
JU336001 - TSA: Macaca mulatta Mamu_506963 mRNA sequence.
JU471177 - TSA: Macaca mulatta Mamu_366673 mRNA sequence.
JV047984 - TSA: Macaca mulatta Mamu_429418 mRNA sequence.
KU750013 - Gallus gallus breed A sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750014 - Gallus gallus breed B sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750015 - Gallus gallus breed Bairi sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750016 - Gallus gallus breed C Hua sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750017 - Gallus gallus breed D Huang sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750018 - Gallus gallus breed GF33C sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750019 - Gallus gallus breed Guangxima sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750020 - Gallus gallus breed H Hua sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750021 - Gallus gallus breed Hua sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750022 - Gallus gallus breed L Zhongma sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750023 - Gallus gallus breed Langshan sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750024 - Gallus gallus breed Luhua sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750025 - Gallus gallus breed M Tie sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750026 - Gallus gallus breed Qingyuanma sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750027 - Gallus gallus breed R Bai sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750028 - Gallus gallus breed S Huang sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750029 - Gallus gallus breed Shiza sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
KU750030 - Gallus gallus breed Wu sodium/hydrogen exchanger 1 (SLC9A1) mRNA, complete cds.
AB179207 - Macaca fascicularis testis cDNA clone: QtsA-14977, similar to human solute carrier family 9 (sodium/hydrogen exchanger),isoform 1 (antiporter, Na+/H+, amiloride sensitive)(SLC9A1), mRNA, RefSeq: NM_003047.2.
AB096993 - Macaca fascicularis testis cDNA clone:QtsA-11240, similar to human sperm-specific sodium proton exchanger (SLC9A10), mRNA, NM_183061.
AB072793 - Macaca fascicularis testis cDNA clone:QtsA-21447, similar to human solute carrier family 9 isoform 11 (SLC9A11), mRNA, NM_178527.
AB070051 - Macaca fascicularis testis cDNA clone:QtsA-12658, similar to human solute carrier family 9 isoform 11(SLC9A11), mRNA, NM_178527.

Ensembl Genes

SLC9A1 at chr1:27431942-27481089 - (ENST00000374086)
SLC9A1 at chr1:27426578-27480973 - (ENST00000545949)
SLC9A1 at chr1:27425306-27430513 - (ENST00000374089)
SLC9A1 at chr1:27425306-27481401 - (ENST00000263980)
SLC9A1 at chr1:27425307-27426173 - (ENST00000490329)
SLC9A1 at chr1:27426836-27429286 - (ENST00000447808)
SLC9A1 at chr1:27440724-27493472 - (ENST00000374084)

GeneReviews

SLC9A1 at chr1:27425300-27481621

Vega Protein-Coding Annotations

OTTHUMT00000012338 at chr1:27425306-27430513
OTTHUMT00000012336 at chr1:27425306-27481401
OTTHUMT00000096876 at chr1:27425307-27426173
OTTHUMT00000096875 at chr1:27426836-27429286
OTTHUMT00000012337 at chr1:27431942-27481089
OTTHUMT00000012339 at chr1:27440724-27493472
OTTHUMT00000354066 at chr3:111859734-112013105
OTTHUMT00000354067 at chr3:111859752-112013074
OTTHUMT00000354068 at chr3:111860063-112005726
OTTHUMT00000354069 at chr3:111996552-112013074
OTTHUMT00000354070 at chr3:111997615-112013063
OTTHUMT00000084205 at chr1:173469603-173572233
OTTHUMT00000084207 at chr1:173469609-173545890
OTTHUMT00000084206 at chr1:173469609-173551057
OTTHUMT00000084208 at chr1:173565557-173572192
OTTHUMT00000084209 at chr1:173567045-173570891