Human hg19 SLC25A46 UCSC Genome Browser v463

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UCSC Genes

SLC25A46 (uc003koz.3) at chr5:110074754-110098484 - Homo sapiens solute carrier family 25, member 46 (SLC25A46), mRNA.
SLC25A46 (uc011cvi.2) at chr5:110073862-110098484 - Homo sapiens solute carrier family 25, member 46 (SLC25A46), mRNA.

NCBI RefSeq genes, curated subset (NM_, NR_, NP_* or YP_*)

NM_001303250.3 at chr5:110073846-110100857
NM_001303249.3 at chr5:110074708-110100857
NM_138773.4 at chr5:110074708-110100857
NR_138151.2 at chr5:110074708-110100857

RefSeq Genes

SLC25A46 at chr5:110074708-110100856 - (NR_138151) 
SLC25A46 at chr5:110073846-110100856 - (NM_001303250) solute carrier family 25 member 46 isoform 3
SLC25A46 at chr5:110074708-110100856 - (NM_001303249) solute carrier family 25 member 46 isoform 2
SLC25A46 at chr5:110074708-110100856 - (NM_138773) solute carrier family 25 member 46 isoform 1

Non-Human RefSeq Genes

SLC25A46 at chr5:110074754-110097568 - (NM_001266009) solute carrier family 25 member 46
SLC25A46 at chr5:110074818-110097473 - (NM_001007830) solute carrier family 25 member 46
slc25a46 at chr5:110074941-110097458 - (NM_001016130) solute carrier family 25 member 46
Slc25a46 at chr5:110074819-110098700 - (NM_001100515) solute carrier family 25 member 46
Slc25a46 at chr5:110074819-110099190 - (NM_026165) solute carrier family 25 member 46 isoform 1
Slc25a46 at chr5:110077746-110099190 - (NM_001357461) solute carrier family 25 member 46 isoform 2
slc25a46 at chr5:110074830-110097473 - (NM_001002558) solute carrier family 25 member 46
slc25a46.L at chr5:110074944-110097459 - (NM_001094583) solute carrier family 25 member 46-B
slc25a46.S at chr5:110074941-110097458 - (NM_001091695) solute carrier family 25 member 46-A

Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110090820-110097913

Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

SLC25A46 at chr5:110073837-110092731
SLC25A46 at chr5:110073862-110097967
SLC25A46 at chr5:110074708-110100857
SLC25A46 at chr5:110074742-110097964
SLC25A46 at chr5:110077379-110098484
SLC25A46 at chr5:110081270-110097355
SLC25A46 at chr5:110089002-110100861
SLC25A46 at chr5:110090820-110097913

International Knockout Mouse Consortium Genes Mapped to Human Genome

Slc25a46_38821 at chr5:110074754-110098484
Slc25a46_82987 at chr5:110074754-110098484
Slc25a46_VG15000 at chr5:110074754-110098484

Alias of STS Marker

SLC25A46 at chr5:109997047-110197445 - (SLC25A46)

BC017169 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.

 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2329  100.0%          5     + 110074754 110098487  BC017169     1  2329  2358

Non-Human Aligned mRNA Search Results

BC020087 - Mus musculus solute carrier family 25, member 46, mRNA (cDNA clone MGC:28937 IMAGE:3990909), complete cds.
BC090000 - Rattus norvegicus solute carrier family 25, member 46, mRNA (cDNA clone IMAGE:7321709), partial cds.
BC166810 - Rattus norvegicus solute carrier family 25, member 46, mRNA (cDNA clone MGC:188621 IMAGE:8376140), complete cds.
MG136382 - Synthetic construct Xenopus tropicalis clone IMAGE:7639616 solute carrier family 25 member 46 (slc25a46) gene, encodes complete protein.
BC076244 - Danio rerio solute carrier family 25, member 46, mRNA (cDNA clone MGC:92767 IMAGE:7086537), complete cds.
BC135960 - Xenopus tropicalis Solute carrier family 25 member 46, mRNA (cDNA clone MGC:121852 IMAGE:7639616), complete cds.
JU337036 - TSA: Macaca mulatta Mamu_537024 mRNA sequence.
JU477768 - TSA: Macaca mulatta Mamu_381631 mRNA sequence.
JV045151 - TSA: Macaca mulatta Mamu_425102 mRNA sequence.
EU441600 - Xenopus borealis clone TB1.b solute carrier family 25 member 46 (Slc25a46) mRNA, partial cds.

Ensembl Genes

SLC25A46 at chr5:110089002-110100857 - (ENST00000513706)
SLC25A46 at chr5:110077379-110098484 - (ENST00000504098)
SLC25A46 at chr5:110074695-110098484 - (ENST00000355943)
SLC25A46 at chr5:110073862-110097955 - (ENST00000509442)
SLC25A46 at chr5:110073837-110092731 - (ENST00000508781)
SLC25A46 at chr5:110073862-110097967 - (ENST00000513807)
SLC25A46 at chr5:110074742-110097964 - (ENST00000447245)
SLC25A46 at chr5:110081270-110097355 - (ENST00000502462)
SLC25A46 at chr5:110090820-110097913 - (ENST00000509432)

GeneReviews

SLC25A46 at chr5:110074708-110100857

Vega Protein-Coding Annotations

OTTHUMT00000372509 at chr5:110073837-110092731
OTTHUMT00000372502 at chr5:110073862-110097967
OTTHUMT00000250721 at chr5:110074695-110098484
OTTHUMT00000372507 at chr5:110074708-110083965
OTTHUMT00000372503 at chr5:110074721-110098787
OTTHUMT00000372508 at chr5:110074740-110097147
OTTHUMT00000372504 at chr5:110074742-110097964
OTTHUMT00000372511 at chr5:110077379-110098484
OTTHUMT00000373506 at chr5:110081270-110097355
OTTHUMT00000372506 at chr5:110089002-110100857
OTTHUMT00000372505 at chr5:110090820-110097913

HUGO Gene Nomenclature

SLC25A46 at chr5:110073847-110100857

gnomAD Loss of Function Metrics by Gene

SLC25A46 at chr5:110074695-110098484

gnomAD Loss of Function Metrics by Transcript

ENST00000355943 at chr5:110074695-110098484
ENST00000447245 at chr5:110074742-110097964
ENST00000504098 at chr5:110077379-110098484
ENST00000509432 at chr5:110090820-110097913
ENST00000509442 at chr5:110073862-110097955
ENST00000513807 at chr5:110073862-110097967