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Gencode Genes

SDC1 (ENST00000381150.5) at chr2:20200799-20225433 - Homo sapiens syndecan 1 (SDC1), transcript variant 1, mRNA. (from RefSeq NM_001006946)
SDC1 (ENST00000482879.5) at chr2:20204002-20223388 - syndecan 1 (from HGNC SDC1)
SDC1 (ENST00000447124.1) at chr2:20204152-20225094 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt F8WCX9)
SDC1 (ENST00000429035.1) at chr2:20203818-20224280 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H7C1K4)
SDC1 (ENST00000403076.5) at chr2:20201486-20225096 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt E9PHH3)
SDC1 (ENST00000254351.9) at chr2:20200797-20225130 - Homo sapiens syndecan 1 (SDC1), transcript variant 2, mRNA. (from RefSeq NM_002997)
HPSE2 (ENST00000370552.7) at chr10:98459118-99235862 - Homo sapiens heparanase 2 (inactive) (HPSE2), transcript variant 1, mRNA. (from RefSeq NM_021828)
HPSE2 (ENST00000628193.2) at chr10:98459317-99235862 - Homo sapiens heparanase 2 (inactive) (HPSE2), transcript variant 3, mRNA. (from RefSeq NM_001166245)
HPSE2 (ENST00000370549.5) at chr10:98459118-99235862 - Homo sapiens heparanase 2 (inactive) (HPSE2), transcript variant 2, mRNA. (from RefSeq NM_001166244)
HPSE2 (ENST00000370546.5) at chr10:98459574-99235802 - Homo sapiens heparanase 2 (inactive) (HPSE2), transcript variant 4, mRNA. (from RefSeq NM_001166246)
CDCP1 (ENST00000425231.2) at chr3:45110216-45146422 - Homo sapiens CUB domain containing protein 1 (CDCP1), transcript variant 2, mRNA. (from RefSeq NM_178181)
CDCP1 (ENST00000296129.6) at chr3:45082277-45146378 - Homo sapiens CUB domain containing protein 1 (CDCP1), transcript variant 1, mRNA. (from RefSeq NM_022842)
SDCBP (ENST00000413219.6) at chr8:58553217-58582830 - Homo sapiens syndecan binding protein (SDCBP), transcript variant 2, mRNA. (from RefSeq NM_001007067)
SDCBP (ENST00000447182.6) at chr8:58553216-58582846 - Homo sapiens syndecan binding protein (SDCBP), transcript variant 5, mRNA. (from RefSeq NM_001007070)
SDCBP (ENST00000424270.6) at chr8:58553237-58582056 - Homo sapiens syndecan binding protein (SDCBP), transcript variant 3, mRNA. (from RefSeq NM_001007068)
SDCBP (ENST00000260130.9) at chr8:58553261-58582858 - Homo sapiens syndecan binding protein (SDCBP), transcript variant 1, mRNA. (from RefSeq NM_005625)
HPSE (ENST00000512196.5) at chr4:83295320-83335153 - Homo sapiens heparanase (HPSE), transcript variant 3, mRNA. (from RefSeq NM_001166498)
HPSE (ENST00000405413.6) at chr4:83292461-83335153 - Homo sapiens heparanase (HPSE), transcript variant 1, mRNA. (from RefSeq NM_006665)
HPSE (ENST00000513463.1) at chr4:83295344-83334782 - Homo sapiens heparanase (HPSE), transcript variant 4, mRNA. (from RefSeq NM_001199830)
HPSE (ENST00000311412.10) at chr4:83292461-83334848 - Homo sapiens heparanase (HPSE), transcript variant 2, mRNA. (from RefSeq NM_001098540)
HPSE (ENST00000509906.5) at chr4:83295320-83335153 - Endoglycosidase that cleaves heparan sulfate  proteoglycans (HSPGs) into heparan sulfate side chains and core  proteoglycans. Participates in extracellular matrix (ECM)  degradation and remodeling. Selectively cleaves the linkage  between a glucuronic acid unit and an N-sulfo glucosamine unit  carrying either a 3-O-sulfo or a 6-O-sulfo group. Can also cleave  the linkage between a glucuronic acid unit and an N-sulfo  glucosamine unit carrying a 2-O-sulfo group, but not linkages  between a glucuronic acid unit and a 2-O-sulfated iduronic acid  moiety. It is essentially inactive at neutral pH but becomes  active under acidic conditions such as during tumor invasion and  in inflammatory processes. Facilitates cell migration associated  with metastasis, wound healing and inflammation. Enhances shedding  of syndecans, and increases endothelial invasion and angiogenesis  in myelomas. Acts as procoagulant by increasing the generation of  activation factor X in the presence of tissue factor and  activation factor VII. Increases cell adhesion to the extacellular  matrix (ECM), independent of its enzymatic activity. Induces  AKT1/PKB phosphorylation via lipid rafts increasing cell mobility  and invasion. Heparin increases this AKT1/PKB activation.  Regulates osteogenesis. Enhances angiogenesis through up-  regulation of SRC-mediated activation of VEGF. Implicated in hair  follicle inner root sheath differentiation and hair homeostasis. (from UniProt Q9Y251)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_002997.4 at chr2:20200797-20225166
NM_001006946.1 at chr2:20200797-20225433

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_005262621.3 at chr2:20200797-20207466
XM_005262620.4 at chr2:20200797-20208134
XM_005262622.2 at chr2:20200797-20223283

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

SDC1 at chr2:20200797-20225130

RefSeq Genes

SDC1 at chr2:20200797-20225130 - (NM_002997) syndecan-1 precursor
SDC1 at chr2:20200797-20225433 - (NM_001006946) syndecan-1 precursor

Non-Human RefSeq Genes

SDC1 at chr2:20201280-20225097 - (NM_001243190) syndecan-1 precursor
SDC1 at chr2:20201485-20225051 - (NM_001075924) syndecan-1 precursor
Sdc1 at chr2:20201276-20224910 - (NM_011519) syndecan-1 precursor
Sdc1 at chr2:20201277-20225038 - (NM_013026) syndecan-1 precursor
Sdc1 at chr2:20202766-20205432 - (NM_001244042) syndecan-1 precursor

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SDC1 at chr2:20200797-20225130
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

SDC1 at chr2:20200797-20225130
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

SDC1 at chr2:20200797-20225112
SDC1 at chr2:20200799-20225433
SDC1 at chr2:20201486-20225096
SDC1 at chr2:20203818-20224280
SDC1 at chr2:20204002-20223388
SDC1 at chr2:20204152-20225094

International Knockout Mouse Consortium Genes Mapped to Human Genome

Sdc1_25176 at chr2:20200797-20225433

BC008765 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2446   99.9%          2     -  20201496  20225110  BC008765     1  2448  2475

Non-Human Aligned mRNA Search Results

BC010560 - Mus musculus syndecan 1, mRNA (cDNA clone MGC:5879 IMAGE:3501359), complete cds.
BC061834 - Rattus norvegicus syndecan 1, mRNA (cDNA clone MGC:72516 IMAGE:5600086), complete cds.
BC123495 - Bos taurus syndecan 1, mRNA (cDNA clone MGC:139976 IMAGE:8285413), complete cds.
AY892261 - Synthetic construct Homo sapiens clone FLH013265.01L syndecan 1 (SDC1) mRNA, partial cds.
AY892262 - Synthetic construct Homo sapiens clone FLH013266.01L syndecan 1 (SDC1) mRNA, partial cds.
JV043488 - TSA: Macaca mulatta Mamu_406410 mRNA sequence.
JV636312 - TSA: Macaca mulatta Mamu_453050 mRNA sequence.