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UCSC Genes

SDC1 (uc002rdo.1) at chr2:20400558-20424927 - Homo sapiens syndecan 1 (SDC1), transcript variant 2, mRNA.
SDC1 (uc010exw.1) at chr2:20403723-20423149 - Homo sapiens syndecan 1 (SDC1), transcript variant 2, mRNA.
SDC1 (uc010exv.3) at chr2:20401247-20424927 - Homo sapiens syndecan 1 (SDC1), transcript variant 2, mRNA.
SDC1 (uc002rdp.1) at chr2:20400558-20425194 - Homo sapiens syndecan 1 (SDC1), transcript variant 1, mRNA.
HPSE2 (uc001kpn.2) at chr10:100216834-100995632 - Homo sapiens heparanase 2 (HPSE2), transcript variant 1, mRNA.
CDCP1 (uc003com.3) at chr3:45123769-45187914 - Homo sapiens CUB domain containing protein 1 (CDCP1), transcript variant 1, mRNA.
SDCBP (uc003xtq.3) at chr8:59465728-59495419 - Homo sapiens syndecan binding protein (syntenin) (SDCBP), transcript variant 2, mRNA.
SDCBP (uc003xtn.3) at chr8:59465728-59495419 - Homo sapiens syndecan binding protein (syntenin) (SDCBP), transcript variant 1, mRNA.
HPSE (uc003hoj.4) at chr4:84213614-84256034 - Homo sapiens heparanase (HPSE), transcript variant 2, mRNA.
HPSE (uc003hok.4) at chr4:84213614-84256306 - Homo sapiens heparanase (HPSE), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_002997.4 at chr2:20400558-20424927
NM_001006946.1 at chr2:20400558-20425194

RefSeq Genes

SDC1 at chr2:20400558-20424891 - (NM_002997) syndecan-1 precursor
SDC1 at chr2:20400558-20425194 - (NM_001006946) syndecan-1 precursor

Non-Human RefSeq Genes

SDC1 at chr2:20400565-20424858 - (NM_001243190) syndecan-1 precursor
SDC1 at chr2:20401246-20424657 - (NM_001075924) syndecan-1 precursor
Sdc1 at chr2:20401247-20424843 - (NM_011519) syndecan-1 precursor
Sdc1 at chr2:20400555-20424799 - (NM_013026) syndecan-1 precursor
Sdc1 at chr2:20402527-20424628 - (NM_001244042) syndecan-1 precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SDC1 at chr2:20400558-20424891
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SDC1 at chr2:20400558-20424891
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403763-20423149
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403763-20423149
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403763-20423149
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403763-20423149
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from GENCODE Version 19

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149

Comprehensive Gene Annotation Set from GENCODE Version 19

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403913-20424855

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

SDC1 at chr2:20400558-20424873
SDC1 at chr2:20400560-20425194
SDC1 at chr2:20401247-20424857
SDC1 at chr2:20402018-20423149
SDC1 at chr2:20403579-20424041
SDC1 at chr2:20403913-20424855

International Knockout Mouse Consortium Genes Mapped to Human Genome

Sdc1_25176 at chr2:20400558-20425194

BC008765 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2446   99.9%          2     -  20401257  20424871  BC008765     1  2448  2475

Non-Human Aligned mRNA Search Results

BC010560 - Mus musculus syndecan 1, mRNA (cDNA clone MGC:5879 IMAGE:3501359), complete cds.
BC061834 - Rattus norvegicus syndecan 1, mRNA (cDNA clone MGC:72516 IMAGE:5600086), complete cds.
BC123495 - Bos taurus syndecan 1, mRNA (cDNA clone MGC:139976 IMAGE:8285413), complete cds.
AY892261 - Synthetic construct Homo sapiens clone FLH013265.01L syndecan 1 (SDC1) mRNA, partial cds.
AY892262 - Synthetic construct Homo sapiens clone FLH013266.01L syndecan 1 (SDC1) mRNA, partial cds.
JV043488 - TSA: Macaca mulatta Mamu_406410 mRNA sequence.
JV636312 - TSA: Macaca mulatta Mamu_453050 mRNA sequence.

Ensembl Genes

SDC1 at chr2:20403579-20424041 - (ENST00000429035)
SDC1 at chr2:20401247-20424857 - (ENST00000403076)
SDC1 at chr2:20400558-20424873 - (ENST00000254351)
BSDC1 at chr1:32859202-32860026 - (ENST00000531222)
BSDC1 at chr1:32849542-32860026 - (ENST00000530753)
BSDC1 at chr1:32844364-32860332 - (ENST00000474414)
BSDC1 at chr1:32842288-32860026 - (ENST00000527163)
BSDC1 at chr1:32834827-32860034 - (ENST00000449308)
BSDC1 at chr1:32833626-32840383 - (ENST00000463967)
BSDC1 at chr1:32831902-32860042 - (ENST00000419121)
BSDC1 at chr1:32830772-32860027 - (ENST00000341071)
BSDC1 at chr1:32830707-32860034 - (ENST00000413080)
BSDC1 at chr1:32830704-32860049 - (ENST00000455895)
BSDC1 at chr1:32830714-32860029 - (ENST00000444377)
BSDC1 at chr1:32831897-32860042 - (ENST00000526031)
BSDC1 at chr1:32832078-32860031 - (ENST00000446293)
BSDC1 at chr1:32833634-32860029 - (ENST00000373520)
BSDC1 at chr1:32842231-32860026 - (ENST00000527513)
BSDC1 at chr1:32843828-32860029 - (ENST00000530485)
BSDC1 at chr1:32849498-32860032 - (ENST00000530876)
BSDC1 at chr1:32852022-32860032 - (ENST00000533084)
MESDC1 at chr15:81293295-81296342 - (ENST00000267984)
SDC1 at chr2:20400560-20425194 - (ENST00000381150)
SDC1 at chr2:20402018-20423149 - (ENST00000482879)
SDC1 at chr2:20403913-20424855 - (ENST00000447124)

Vega Protein-Coding Annotations

OTTHUMT00000207495 at chr2:20400558-20424873
OTTHUMT00000323931 at chr2:20401247-20424857
OTTHUMT00000323932 at chr2:20402018-20423149
OTTHUMT00000323934 at chr2:20403579-20424041
OTTHUMT00000323933 at chr2:20403913-20424855