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UCSC Genes

SCN9A (uc010fpl.3) at chr2:167051697-167232497 - Homo sapiens sodium channel, voltage-gated, type IX, alpha subunit (SCN9A), mRNA.
SCN9A (uc002udt.1) at chr2:167138189-167163109 - Homo sapiens sodium channel, voltage-gated, type IX, alpha subunit (SCN9A), mRNA.
SCN9A (uc002uds.1) at chr2:167138189-167163109 - Homo sapiens sodium channel, voltage-gated, type IX, alpha subunit (SCN9A), mRNA.
SCN9A (uc002udr.1) at chr2:167138189-167163109 - Homo sapiens sodium channel, voltage-gated, type IX, alpha subunit (SCN9A), mRNA.
FGF12 (uc003fsx.3) at chr3:191857182-192126838 - Homo sapiens fibroblast growth factor 12 (FGF12), transcript variant 1, mRNA.
NEDD4L (uc002lgy.3) at chr18:55711610-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant j, mRNA.
NEDD4L (uc010xee.1) at chr18:55714458-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant b, mRNA.
NEDD4L (uc002lhg.3) at chr18:55888754-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant a, mRNA.
NEDD4L (uc002lhd.2) at chr18:55816565-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant f, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_002977.3 at chr2:167051695-167232497

RefSeq Genes

SCN9A at chr2:167051697-167232497 - (NM_002977) sodium channel protein type 9 subunit alpha isoform 1
SCN9A at chr2:167051697-167232454 - (NM_001365536) sodium channel protein type 9 subunit alpha isoform 2

Non-Human RefSeq Genes

SCN9A at chr2:166846692-166930134 - (NM_001293282) sodium channel protein type 9 subunit alpha
SCN9A at chr2:166152322-166246337 - (NM_001293282) sodium channel protein type 9 subunit alpha
SCN9A at chr2:165946657-166032916 - (NM_001293282) sodium channel protein type 9 subunit alpha
SCN9A at chr2:167054996-167168266 - (NM_001110787) sodium channel protein type 9 subunit alpha
SCN9A at chr2:167055182-167168266 - (NM_001082358) sodium channel protein type 9 subunit alpha
Scn9a at chr2:167051839-167168266 - (NM_133289) sodium channel protein type 9 subunit alpha
Scn9a at chr2:167051777-167168320 - (NM_001290674) sodium channel protein type 9 subunit alpha isoform a
Scn9a at chr2:167051777-167168320 - (NM_001290675) sodium channel protein type 9 subunit alpha isoform b

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167134226-167232479

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054809-167061749
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167099085-167149882
SCN9A at chr2:167099134-167129259
SCN9A at chr2:167132927-167134823
SCN9A at chr2:167134226-167232479
SCN9A at chr2:167145125-167232454
SCN9A at chr2:167157684-167160599
SCN9A at chr2:167158573-167232511
SCN9A at chr2:167163020-167168316

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167134226-167232479

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054809-167061749
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167099085-167149882
SCN9A at chr2:167099134-167129259
SCN9A at chr2:167132927-167134823
SCN9A at chr2:167134226-167232479
SCN9A at chr2:167145125-167232454
SCN9A at chr2:167157684-167160599
SCN9A at chr2:167158573-167232511
SCN9A at chr2:167163020-167168316

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167134226-167232479

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051699-167232411
SCN9A at chr2:167053972-167232411
SCN9A at chr2:167054809-167061749
SCN9A at chr2:167054921-167168266
SCN9A at chr2:167055121-167232424
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167099134-167129259
SCN9A at chr2:167132927-167134823
SCN9A at chr2:167134226-167232479
SCN9A at chr2:167145125-167232454
SCN9A at chr2:167157684-167160599
SCN9A at chr2:167158573-167232511

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051704-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051704-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051704-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051704-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

Basic Gene Annotation Set from GENCODE Version 19

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from GENCODE Version 19

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

SCN9A at chr2:167051695-167232503
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167051706-167232497
SCN9A at chr2:167055182-167168266
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167138270-167163081
SCN9A at chr2:167159129-167162430

International Knockout Mouse Consortium Genes Mapped to Human Genome

Scn9a_113794 at chr2:167051695-167232497
Scn9a_VG12159 at chr2:167051695-167232497

Alias of STS Marker

SCN9A at chr2:167041249-167241323 - (SCN9A)

Human Aligned mRNA Search Results

AJ277393 - Homo sapiens partial mRNA for voltage-gated sodium channel (SCN9A gene), 3'UTR.
AJ310882 - Homo sapiens partial mRNA for voltage-gated sodium channel Nav1.7 (SCN9A gene), D1 neonatal splice variant, cell line MDA-MB-231.
AJ310883 - Homo sapiens partial mRNA for Nav1.7 voltage-gated-sodium channel (SCN9A gene), D1 neonatal splice variant, cell line MCF-7.
AJ310897 - Homo sapiens partial mRNA for voltage-gated sodium Nav1.7 (SCN9A gene) (SCN9A gene), cell line MDA-MB-231.
AY682084 - Homo sapiens voltage-gated sodium channel Nav1.7 (SCN9A) mRNA, partial cds, alternatively spliced.
AY682085 - Homo sapiens voltage-gated sodium channel Nav1.7 (SCN9A) mRNA, partial cds, alternatively spliced.
AY682086 - Homo sapiens voltage-gated sodium channel Nav1.7 (SCN9A) mRNA, partial cds, alternatively spliced.
DQ857292 - Homo sapiens voltage-gated sodium channel Nav1.7 (SCN9A) mRNA, complete cds.
KM096551 - Homo sapiens clone LA8 SCN9A NAT splice variant 2 antisense RNA, complete sequence.
KM096550 - Homo sapiens clone LA5 SCN9A NAT splice variant 1 antisense RNA, complete sequence.

Human Unaligned mRNA Search Results

JF437648 - Homo sapiens isolate JP voltage-gated sodium channel subunit alpha NaV1.7 (SCN9A) mRNA, partial cds.
NR_110260 - Homo sapiens SCN1A and SCN9A antisense RNA 1 (SCN1A-AS1), long non-coding RNA.

Non-Human Aligned mRNA Search Results

BC158048 - Mus musculus sodium channel, voltage-gated, type IX, alpha, mRNA (cDNA clone MGC:189974 IMAGE:9088161), complete cds.
BC172147 - Mus musculus sodium channel, voltage-gated, type IX, alpha, mRNA (cDNA clone MGC:198852 IMAGE:9054817), complete cds.
AM905322 - Mus musculus partial mRNA for sodium channel Nav1.7 (Scn9a gene), strain C57BL/6, variant 1 (exon 16A).
AM905326 - Rattus norvegicus partial mRNA for sodium channel Nav1.7 (Scn9a gene), strain Wistar, variant 1 (exon 16A).
KM373695 - Mus musculus strain C57BL6 voltage-gated sodium channel Nav1.7 variant a (Scn9a) mRNA, complete cds.
KM373696 - Mus musculus strain C57BL6 voltage-gated sodium channel Nav1.7 variant b (Scn9a) mRNA, complete cds.
BC172761 - Synthetic construct Homo sapiens clone IMAGE:9095692; MGC:199466 sodium channel, voltage-gated, type IX, alpha (Scn9a) gene, encodes complete protein.
MF616470 - Antrozous pallidus Nav1.7 (SCN9A) mRNA, complete cds.
JF912494 - Heterocephalus glaber NaV1.7 (SCN9A) mRNA, partial cds.
KM066119 - Thamnophis sirtalis isolate WC001 Sodium channel protein type 9 subunit alpha (SCN9A) mRNA, exons 22 through 25 and partial cds.
KM096553 - Mus musculus clone 3.1 SCN9A NAT splice variant 2 antisense RNA, complete sequence.
KM096552 - Mus musculus clone 3.2 SCN9A NAT splice variant 1 antisense RNA, complete sequence.

Ensembl Genes

SCN9A at chr2:167138270-167163081 - (ENST00000454569)
SCN9A at chr2:167055182-167168266 - (ENST00000409435)
SCN9A at chr2:167051706-167232497 - (ENST00000303354)
SCN9A at chr2:167051695-167232503 - (ENST00000409672)
SCN9A at chr2:167051706-167232497 - (ENST00000375387)
SCN9A at chr2:167138270-167163081 - (ENST00000452182)
SCN9A at chr2:167159129-167162430 - (ENST00000472119)

GeneReviews

SCN9A Neuropathic Pain Syndromes at chr2:167051697-167232497 - (SCN9A)

Vega Protein-Coding Annotations

OTTHUMT00000333636 at chr2:167051695-167232503
OTTHUMT00000333639 at chr2:167055182-167168266
OTTHUMT00000333638 at chr2:167138270-167163081
OTTHUMT00000333637 at chr2:167138270-167163081
OTTHUMT00000333640 at chr2:167159129-167162430