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UCSC Genes

MSH5-SAPCD1 (uc003nwz.4) at chr6:31727202-31732624 - Homo sapiens MSH5-SAPCD1 readthrough (NMD candidate) (MSH5-SAPCD1), non-coding RNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001039651.1 at chr6:31730773-31732627
NM_001039651.1 at chr6_apd_hap1:3045524-3047378
NM_001039651.1 at chr6_cox_hap2:3240359-3242214
NM_001039651.1 at chr6_dbb_hap3:3016355-3018209
NM_001039651.1 at chr6_mcf_hap5:3110470-3112324
NM_001039651.1 at chr6_ssto_hap7:3061586-3063440
NR_126423.1 at chr6:31731912-31733365
NR_126423.1 at chr6_apd_hap1:3046663-3048116
NR_126423.1 at chr6_cox_hap2:3241498-3242952
NR_126423.1 at chr6_dbb_hap3:3017494-3018947
NR_126423.1 at chr6_mcf_hap5:3111609-3113062
NR_126423.1 at chr6_ssto_hap7:3062725-3064178

RefSeq Genes

SAPCD1 at chr6_ssto_hap7:3061586-3063437 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1 at chr6_mcf_hap5:3110470-3112321 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1 at chr6_dbb_hap3:3016355-3018206 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1 at chr6_cox_hap2:3240359-3242211 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1 at chr6_apd_hap1:3045524-3047375 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1 at chr6:31730773-31732624 - (NM_001039651) suppressor APC domain-containing protein 1
SAPCD1-AS1 at chr6_ssto_hap7:3062726-3064178 - (NR_126423) 
SAPCD1-AS1 at chr6_mcf_hap5:3111610-3113062 - (NR_126423) 
SAPCD1-AS1 at chr6_dbb_hap3:3017495-3018947 - (NR_126423) 
SAPCD1-AS1 at chr6_cox_hap2:3241499-3242952 - (NR_126423) 
SAPCD1-AS1 at chr6_apd_hap1:3046664-3048116 - (NR_126423) 
SAPCD1-AS1 at chr6:31731913-31733365 - (NR_126423) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

MSH5-SAPCD1 readthrough (NMD candidate) at chr6_ssto_hap7:3038543-3063440 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_qbl_hap6:3001363-3023045 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_mcf_hap5:3087409-3112324 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_mann_hap4:3050615-3058094 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_dbb_hap3:2993299-3018209 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_cox_hap2:3217334-3242214 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6_apd_hap1:3040680-3047378 - (NR_037846.1)
MSH5-SAPCD1 readthrough (NMD candidate) at chr6:31707725-31732627 - (NR_037846.1)
SAPCD1 antisense RNA 1 at chr6:31731912-31733365 - (NR_126423.1)
SAPCD1 antisense RNA 1 at chr6_apd_hap1:3046663-3048116 - (NR_126423.1)
SAPCD1 antisense RNA 1 at chr6_cox_hap2:3241498-3242952 - (NR_126423.1)
SAPCD1 antisense RNA 1 at chr6_dbb_hap3:3017494-3018947 - (NR_126423.1)
SAPCD1 antisense RNA 1 at chr6_mcf_hap5:3111609-3113062 - (NR_126423.1)
SAPCD1 antisense RNA 1 at chr6_ssto_hap7:3062725-3064178 - (NR_126423.1)

Non-Human RefSeq Genes

SAPCD1 at chr6_ssto_hap7:3061592-3063132 - (NM_001194586) suppressor APC domain-containing protein 1
SAPCD1 at chr6_mcf_hap5:3110476-3112016 - (NM_001194586) suppressor APC domain-containing protein 1
SAPCD1 at chr6_dbb_hap3:3016361-3017901 - (NM_001194586) suppressor APC domain-containing protein 1
SAPCD1 at chr6_cox_hap2:3240365-3241905 - (NM_001194586) suppressor APC domain-containing protein 1
SAPCD1 at chr6_apd_hap1:3045530-3047070 - (NM_001194586) suppressor APC domain-containing protein 1
SAPCD1 at chr6:31730779-31732319 - (NM_001194586) suppressor APC domain-containing protein 1
Sapcd1 at chr6_ssto_hap7:3061639-3063392 - (NM_001004069) suppressor APC domain-containing protein 1
Sapcd1 at chr6_mcf_hap5:3110523-3112276 - (NM_001004069) suppressor APC domain-containing protein 1
Sapcd1 at chr6_dbb_hap3:3016408-3017826 - (NM_001004069) suppressor APC domain-containing protein 1
Sapcd1 at chr6_cox_hap2:3240412-3241830 - (NM_001004069) suppressor APC domain-containing protein 1
Sapcd1 at chr6_apd_hap1:3045577-3047330 - (NM_001004069) suppressor APC domain-containing protein 1
Sapcd1 at chr6:31730826-31732579 - (NM_001004069) suppressor APC domain-containing protein 1
SAPCD1 at chr6_ssto_hap7:3061574-3063420 - (NM_001082467) suppressor APC domain-containing protein 1
SAPCD1 at chr6_mcf_hap5:3110458-3112243 - (NM_001082467) suppressor APC domain-containing protein 1
SAPCD1 at chr6_dbb_hap3:3016343-3018128 - (NM_001082467) suppressor APC domain-containing protein 1
SAPCD1 at chr6_cox_hap2:3240269-3242196 - (NM_001082467) suppressor APC domain-containing protein 1
SAPCD1 at chr6_apd_hap1:3045434-3047360 - (NM_001082467) suppressor APC domain-containing protein 1
SAPCD1 at chr6:31730683-31732609 - (NM_001082467) suppressor APC domain-containing protein 1
Sapcd1 at chr6_apd_hap1:3045524-3047012 - (NR_028258) 
Sapcd1 at chr6_ssto_hap7:3061619-3062742 - (NR_028258) 
Sapcd1 at chr6_mcf_hap5:3110503-3111626 - (NR_028258) 
Sapcd1 at chr6_cox_hap2:3240359-3241847 - (NR_028258) 
Sapcd1 at chr6:31730773-31732261 - (NR_028258) 
Sapcd1 at chr6_dbb_hap3:3016353-3016914 - (NR_028258) 
Sapcd1 at chr6_ssto_hap7:3061619-3062742 - (NM_023893) suppressor APC domain-containing protein 1
Sapcd1 at chr6_mcf_hap5:3110503-3111626 - (NM_023893) suppressor APC domain-containing protein 1
Sapcd1 at chr6_dbb_hap3:3016353-3016914 - (NM_023893) suppressor APC domain-containing protein 1
Sapcd1 at chr6:31730773-31732261 - (NM_023893) suppressor APC domain-containing protein 1
Sapcd1 at chr6_cox_hap2:3240359-3241847 - (NM_023893) suppressor APC domain-containing protein 1
Sapcd1 at chr6_apd_hap1:3045524-3047012 - (NM_023893) suppressor APC domain-containing protein 1

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31730826-31732605

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31730826-31732605
SAPCD1 at chr6:31731397-31732076

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

SAPCD1 at chr6:31730576-31731936
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

SAPCD1 at chr6:31730576-31731936
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

SAPCD1 at chr6:31730576-31731936
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076

Basic Gene Annotation Set from GENCODE Version 19

SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6_apd_hap1:3045327-3047379
SAPCD1 at chr6_apd_hap1:3045524-3047373
SAPCD1 at chr6_apd_hap1:3045524-3047379
SAPCD1 at chr6_cox_hap2:3240162-3242215
SAPCD1 at chr6_cox_hap2:3240359-3242209
SAPCD1 at chr6_cox_hap2:3240359-3242215
SAPCD1 at chr6_dbb_hap3:3016158-3018210
SAPCD1 at chr6_dbb_hap3:3016355-3018204
SAPCD1 at chr6_dbb_hap3:3016355-3018210
SAPCD1 at chr6_mcf_hap5:3110273-3112325
SAPCD1 at chr6_mcf_hap5:3110470-3112319
SAPCD1 at chr6_mcf_hap5:3110470-3112325
SAPCD1 at chr6_ssto_hap7:3061389-3063441
SAPCD1 at chr6_ssto_hap7:3061586-3063435
SAPCD1 at chr6_ssto_hap7:3061586-3063441

Comprehensive Gene Annotation Set from GENCODE Version 19

SAPCD1 at chr6:31730576-31731936
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076
SAPCD1 at chr6_apd_hap1:3045327-3047379
SAPCD1 at chr6_apd_hap1:3045524-3047373
SAPCD1 at chr6_apd_hap1:3045524-3047379
SAPCD1 at chr6_apd_hap1:3046148-3046827
SAPCD1 at chr6_cox_hap2:3240162-3242215
SAPCD1 at chr6_cox_hap2:3240359-3242209
SAPCD1 at chr6_cox_hap2:3240359-3242215
SAPCD1 at chr6_cox_hap2:3240983-3241662
SAPCD1 at chr6_dbb_hap3:3016158-3018210
SAPCD1 at chr6_dbb_hap3:3016355-3018204
SAPCD1 at chr6_dbb_hap3:3016355-3018210
SAPCD1 at chr6_dbb_hap3:3016979-3017658
SAPCD1 at chr6_mcf_hap5:3110273-3112325
SAPCD1 at chr6_mcf_hap5:3110470-3112319
SAPCD1 at chr6_mcf_hap5:3110470-3112325
SAPCD1 at chr6_mcf_hap5:3111094-3111773
SAPCD1 at chr6_ssto_hap7:3061389-3063441
SAPCD1 at chr6_ssto_hap7:3061586-3063435
SAPCD1 at chr6_ssto_hap7:3061586-3063441
SAPCD1 at chr6_ssto_hap7:3062210-3062876

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6_apd_hap1:3045327-3047379
SAPCD1 at chr6_apd_hap1:3045524-3047373
SAPCD1 at chr6_apd_hap1:3045524-3047379
SAPCD1 at chr6_cox_hap2:3240162-3242215
SAPCD1 at chr6_cox_hap2:3240359-3242209
SAPCD1 at chr6_cox_hap2:3240359-3242215
SAPCD1 at chr6_dbb_hap3:3016158-3018210
SAPCD1 at chr6_dbb_hap3:3016355-3018204
SAPCD1 at chr6_dbb_hap3:3016355-3018210
SAPCD1 at chr6_mcf_hap5:3110273-3112325
SAPCD1 at chr6_mcf_hap5:3110470-3112319
SAPCD1 at chr6_mcf_hap5:3110470-3112325
SAPCD1 at chr6_ssto_hap7:3061389-3063441
SAPCD1 at chr6_ssto_hap7:3061586-3063435
SAPCD1 at chr6_ssto_hap7:3061586-3063441

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

SAPCD1 at chr6:31730576-31731936
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076
SAPCD1 at chr6_apd_hap1:3045327-3047379
SAPCD1 at chr6_apd_hap1:3045524-3047373
SAPCD1 at chr6_apd_hap1:3045524-3047379
SAPCD1 at chr6_apd_hap1:3046148-3046827
SAPCD1 at chr6_cox_hap2:3240162-3242215
SAPCD1 at chr6_cox_hap2:3240359-3242209
SAPCD1 at chr6_cox_hap2:3240359-3242215
SAPCD1 at chr6_cox_hap2:3240983-3241662
SAPCD1 at chr6_dbb_hap3:3016158-3018210
SAPCD1 at chr6_dbb_hap3:3016355-3018204
SAPCD1 at chr6_dbb_hap3:3016355-3018210
SAPCD1 at chr6_dbb_hap3:3016979-3017658
SAPCD1 at chr6_mcf_hap5:3110273-3112325
SAPCD1 at chr6_mcf_hap5:3110470-3112319
SAPCD1 at chr6_mcf_hap5:3110470-3112325
SAPCD1 at chr6_mcf_hap5:3111094-3111773
SAPCD1 at chr6_ssto_hap7:3061389-3063441
SAPCD1 at chr6_ssto_hap7:3061586-3063435
SAPCD1 at chr6_ssto_hap7:3061586-3063441
SAPCD1 at chr6_ssto_hap7:3062210-3062876

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

SAPCD1 at chr6:31730576-31732628
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

SAPCD1 at chr6:31730576-31732628
SAPCD1 at chr6:31730773-31732622
SAPCD1 at chr6:31730773-31732628
SAPCD1 at chr6:31731397-31732076

Human Unaligned mRNA Search Results

NR_126423 - Homo sapiens SAPCD1 antisense RNA 1 (SAPCD1-AS1), long non-coding RNA.
NR_037846 - Homo sapiens MSH5-SAPCD1 readthrough (NMD candidate) (MSH5-SAPCD1), long non-coding RNA.

Ensembl Genes

SAPCD1 at chr6_ssto_hap7:3061586-3063441 - (ENST00000449857)
SAPCD1 at chr6_ssto_hap7:3061389-3063441 - (ENST00000449925)
MSH5-SAPCD1 at chr6_ssto_hap7:3059310-3061734 - (ENST00000485553)
MSH5-SAPCD1 at chr6_ssto_hap7:3056755-3063441 - (ENST00000495073)
SAPCD1 at chr6_mcf_hap5:3111094-3111773 - (ENST00000491492)
SAPCD1 at chr6_mcf_hap5:3110470-3112319 - (ENST00000551778)
MSH5-SAPCD1 at chr6_mcf_hap5:3109918-3112325 - (ENST00000465533)
MSH5-SAPCD1 at chr6_mcf_hap5:3087481-3112325 - (ENST00000469644)
SAPCD1 at chr6_dbb_hap3:3016979-3017658 - (ENST00000469460)
SAPCD1 at chr6_dbb_hap3:3016355-3018204 - (ENST00000548987)
MSH5-SAPCD1 at chr6_dbb_hap3:3015803-3018210 - (ENST00000496211)
MSH5-SAPCD1 at chr6_dbb_hap3:3012804-3018210 - (ENST00000476578)
SAPCD1-AS1 at chr6_cox_hap2:3241673-3242952 - (ENST00000426731)
SAPCD1 at chr6_cox_hap2:3240359-3242215 - (ENST00000457185)
SAPCD1 at chr6_cox_hap2:3240162-3242215 - (ENST00000383205)
MSH5-SAPCD1 at chr6_cox_hap2:3238083-3240507 - (ENST00000480223)
MSH5-SAPCD1 at chr6_cox_hap2:3217406-3242215 - (ENST00000480850)
SAPCD1-AS1 at chr6_apd_hap1:3046838-3048116 - (ENST00000424498)
SAPCD1 at chr6_apd_hap1:3045524-3047379 - (ENST00000447852)
SAPCD1 at chr6_apd_hap1:3045327-3047379 - (ENST00000436320)
MSH5-SAPCD1 at chr6_apd_hap1:3041973-3047379 - (ENST00000492776)
SAPCD1-AS1 at chr6:31732087-31733365 - (ENST00000419679)
SAPCD1 at chr6:31730773-31732628 - (ENST00000415669)
SAPCD1 at chr6:31730576-31731936 - (ENST00000433778)
MSH5-SAPCD1 at chr6:31728497-31730921 - (ENST00000491552)
MSH5-SAPCD1 at chr6:31707797-31732627 - (ENST00000493662)
MSH5-SAPCD1 at chr6:31727222-31732627 - (ENST00000498473)
MSH5-SAPCD1 at chr6:31730221-31732628 - (ENST00000476085)
SAPCD1 at chr6:31730773-31732622 - (ENST00000425424)
SAPCD1 at chr6:31731397-31732076 - (ENST00000494299)
MSH5-SAPCD1 at chr6_apd_hap1:3040693-3047379 - (ENST00000466318)
MSH5-SAPCD1 at chr6_apd_hap1:3044972-3047379 - (ENST00000487383)
SAPCD1 at chr6_apd_hap1:3045524-3047373 - (ENST00000552302)
SAPCD1 at chr6_apd_hap1:3046148-3046827 - (ENST00000498119)
MSH5-SAPCD1 at chr6_cox_hap2:3217334-3239151 - (ENST00000548094)
MSH5-SAPCD1 at chr6_cox_hap2:3236808-3242215 - (ENST00000469011)
MSH5-SAPCD1 at chr6_cox_hap2:3239807-3242215 - (ENST00000477722)
SAPCD1 at chr6_cox_hap2:3240359-3242209 - (ENST00000547662)
SAPCD1 at chr6_cox_hap2:3240983-3241662 - (ENST00000465353)
MSH5-SAPCD1 at chr6_dbb_hap3:2993371-3018210 - (ENST00000583103)
MSH5-SAPCD1 at chr6_dbb_hap3:3014079-3016508 - (ENST00000469909)
SAPCD1 at chr6_dbb_hap3:3016158-3018210 - (ENST00000427166)
SAPCD1 at chr6_dbb_hap3:3016355-3018210 - (ENST00000443153)
SAPCD1-AS1 at chr6_dbb_hap3:3017669-3018947 - (ENST00000415710)
MSH5-SAPCD1 at chr6_mcf_hap5:3106919-3112325 - (ENST00000482009)
SAPCD1 at chr6_mcf_hap5:3110273-3112325 - (ENST00000425286)
SAPCD1 at chr6_mcf_hap5:3110470-3112325 - (ENST00000453534)
SAPCD1-AS1 at chr6_mcf_hap5:3111784-3113062 - (ENST00000421248)
MSH5-SAPCD1 at chr6_ssto_hap7:3058035-3063441 - (ENST00000480622)
MSH5-SAPCD1 at chr6_ssto_hap7:3061034-3063441 - (ENST00000490634)
SAPCD1 at chr6_ssto_hap7:3061586-3063435 - (ENST00000548003)
SAPCD1 at chr6_ssto_hap7:3062210-3062876 - (ENST00000489292)