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UCSC Genes

RNF43 (uc002iwh.4) at chr17:56431038-56494931 - Homo sapiens ring finger protein 43 (RNF43), mRNA.
RNF43 (uc010wnv.2) at chr17:56431038-56493120 - Homo sapiens ring finger protein 43 (RNF43), mRNA.
RNF43 (uc010dcw.3) at chr17:56434344-56494931 - Homo sapiens ring finger protein 43 (RNF43), mRNA.
RNF43 (uc002iwg.4) at chr17:56431038-56494931 - Homo sapiens ring finger protein 43 (RNF43), mRNA.
RNF43 (uc002iwf.3) at chr17:56431038-56494894 - Homo sapiens ring finger protein 43 (RNF43), mRNA.
AKAP8L (uc002naw.1) at chr19:15490859-15529833 - Homo sapiens A kinase (PRKA) anchor protein 8-like (AKAP8L), mRNA.
AKAP8L (uc002nay.1) at chr19:15510746-15529833 - Homo sapiens A kinase (PRKA) anchor protein 8-like (AKAP8L), mRNA.
UBE2D2 (uc003ler.3) at chr5:138940751-139008018 - Homo sapiens ubiquitin-conjugating enzyme E2D 2 (UBE2D2), transcript variant 1, mRNA.
UBE2D2 (uc003leq.3) at chr5:138940751-139008018 - Homo sapiens ubiquitin-conjugating enzyme E2D 2 (UBE2D2), transcript variant 2, mRNA.
FZD5 (uc002vcj.3) at chr2:208627310-208634143 - Homo sapiens frizzled family receptor 5 (FZD5), mRNA.
FZD5 (uc021vvr.1) at chr2:208631706-208633463 - Homo sapiens frizzled family receptor 5 (FZD5), mRNA.
NONO (uc004dzp.3) at chrX:70503042-70521018 - Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 3, mRNA.
NONO (uc011mpv.2) at chrX:70503042-70521018 - Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 4, mRNA.
NONO (uc004dzo.3) at chrX:70503042-70521018 - Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 1, mRNA.
NONO (uc004dzn.3) at chrX:70503042-70521018 - Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 2, mRNA.
NONO (uc004dzq.3) at chrX:70514069-70521018 - Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 4, mRNA.
SFPQ (uc001bys.3) at chr1:35649201-35658743 - Homo sapiens splicing factor proline/glutamine-rich (SFPQ), mRNA.
UBE2D3 (uc003hwl.3) at chr4:103717133-103748708 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 7, mRNA.
UBE2D3 (uc011ceu.2) at chr4:103717133-103749105 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 1, mRNA.
UBE2D3 (uc011cet.2) at chr4:103717133-103749105 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 2, mRNA.
UBE2D3 (uc003hwr.3) at chr4:103717133-103790032 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 6, mRNA.
UBE2D3 (uc003hwp.3) at chr4:103717133-103749307 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 5, mRNA.
UBE2D3 (uc003hwo.3) at chr4:103717133-103749105 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 4, mRNA.
UBE2D3 (uc003hwk.3) at chr4:103717133-103748708 - Homo sapiens ubiquitin-conjugating enzyme E2D 3 (UBE2D3), transcript variant 3, mRNA.
UBB (uc002gpx.3) at chr17:16284367-16286054 - Homo sapiens ubiquitin B (UBB), mRNA.
UBB (uc021tqs.1) at chr17:16285222-16285911 - Homo sapiens ubiquitin B (UBB), mRNA.
UBB (uc010vwe.1) at chr17:16284367-16286053 - Homo sapiens ubiquitin B (UBB), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001305545.1 at chr17:56429861-56480082
NM_017763.5 at chr17:56429861-56494943
NM_001305544.1 at chr17:56429861-56494943

RefSeq Genes

RNF43 at chr17:56429861-56494895 - (NM_001305544) E3 ubiquitin-protein ligase RNF43 isoform 1 precursor
RNF43 at chr17:56429861-56480082 - (NM_001305545) E3 ubiquitin-protein ligase RNF43 isoform 2
RNF43 at chr17:56429861-56494943 - (NM_017763) E3 ubiquitin-protein ligase RNF43 isoform 1 precursor

Non-Human RefSeq Genes

Rnf43 at chr17:56431036-56448396 - (NM_001363437) E3 ubiquitin-protein ligase RNF43 isoform 2
Rnf43 at chr17:56431036-56494454 - (NM_172448) E3 ubiquitin-protein ligase RNF43 isoform 1 precursor
Rnf43 at chr17:56432304-56492938 - (NM_001135921) E3 ubiquitin-protein ligase RNF43 precursor
RNF43 at chr17:56431761-56492938 - (NM_001191194) E3 ubiquitin-protein ligase RNF43 precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from GENCODE Version 19

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56494374-56494956

Comprehensive Gene Annotation Set from GENCODE Version 19

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56494374-56494956

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56494374-56494956

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494713
RNF43 at chr17:56431037-56493002
RNF43 at chr17:56431037-56494894
RNF43 at chr17:56431037-56494943
RNF43 at chr17:56432288-56480082
RNF43 at chr17:56434344-56494446
RNF43 at chr17:56440511-56440953
RNF43 at chr17:56494374-56494956

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494480

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

RNF43 at chr17:56429861-56494480
RNF43 at chr17:56429861-56494480

International Knockout Mouse Consortium Genes Mapped to Human Genome

Rnf43_72025 at chr17:56431037-56494931
Rnf43_80608 at chr17:56431037-56494931
Rnf43_92508 at chr17:56431037-56494931
Rnf43_VG10623 at chr17:56431037-56494931

BC109028 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2709  100.0%         17     -  56432144  56493135  BC109028     1  2709  2709

Human Unaligned mRNA Search Results

NR_038418 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 9, long non-coding RNA.
NR_038411 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 2, long non-coding RNA.
NR_038414 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 5, long non-coding RNA.
NR_038412 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 3, long non-coding RNA.
NR_038410 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 1, long non-coding RNA.
NR_038413 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 4, long non-coding RNA.
NR_038415 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 6, long non-coding RNA.
NR_038417 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 8, long non-coding RNA.
NR_038416 - Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (TSPOAP1-AS1), transcript variant 7, long non-coding RNA.
DI481829 - KR 1020140132712-A/11: CANCER PATIENT SELECTION FOR ADMINISTRATION OF WNT SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
DI481828 - KR 1020140132712-A/10: CANCER PATIENT SELECTION FOR ADMINISTRATION OF WNT SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
DI481827 - KR 1020140132712-A/9: CANCER PATIENT SELECTION FOR ADMINISTRATION OF WNT SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
DI481826 - KR 1020140132712-A/8: CANCER PATIENT SELECTION FOR ADMINISTRATION OF WNT SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
HZ058895 - JP 2015511484-A/7: CANCER PATIENT SELECTION FOR ADMINISTRATION OF Wnt SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
HZ058894 - JP 2015511484-A/6: CANCER PATIENT SELECTION FOR ADMINISTRATION OF Wnt SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
HZ058893 - JP 2015511484-A/5: CANCER PATIENT SELECTION FOR ADMINISTRATION OF Wnt SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.
HZ058892 - JP 2015511484-A/4: CANCER PATIENT SELECTION FOR ADMINISTRATION OF Wnt SIGNALING INHIBITORS USING RNF43 MUTATION STATUS.

Non-Human Aligned mRNA Search Results

BC004781 - Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:3588131), partial cds.
BC029717 - Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:5025887), partial cds.
BC075707 - Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:3989267), partial cds.
BC131957 - Mus musculus ring finger protein 43, mRNA (cDNA clone MGC:163588 IMAGE:40130234), complete cds.

Ensembl Genes

RNF43 at chr17:56440511-56440953 - (ENST00000582293)
RNF43 at chr17:56432288-56480082 - (ENST00000577625)
RNF43 at chr17:56431037-56494894 - (ENST00000584437)
RNF43 at chr17:56429861-56494713 - (ENST00000407977)
RNF43 at chr17:56429861-56494480 - (ENST00000500597)
RNF43 at chr17:56431037-56494943 - (ENST00000577716)
RNF43 at chr17:56431037-56493002 - (ENST00000583753)
RNF43 at chr17:56434344-56494446 - (ENST00000581868)
RNF43 at chr17:56494374-56494956 - (ENST00000580014)