Human hg19 RNF41 UCSC Genome Browser v464

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UCSC Genes

RNF41 (uc001skg.2) at chr12:56596288-56615753 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 3, mRNA.
RNF41 (uc021qyz.1) at chr12:56596288-56615485 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 4, mRNA.
RNF41 (uc010sqh.2) at chr12:56596288-56615753 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 2, mRNA.
RNF41 (uc010sqg.2) at chr12:56596288-56615753 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 3, mRNA.
RNF41 (uc001skf.2) at chr12:56596288-56615715 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 1, mRNA.
RNF41 (uc001ske.2) at chr12:56596288-56615715 - Homo sapiens ring finger protein 41 (RNF41), transcript variant 2, mRNA.
USP8 (uc001zyl.4) at chr15:50716579-50793277 - Homo sapiens ubiquitin specific peptidase 8 (USP8), transcript variant 1, mRNA.
USP8 (uc001zyn.4) at chr15:50716579-50793277 - Homo sapiens ubiquitin specific peptidase 8 (USP8), transcript variant 2, mRNA.
USP8 (uc001zym.4) at chr15:50716579-50793277 - Homo sapiens ubiquitin specific peptidase 8 (USP8), transcript variant 3, mRNA.
BIRC6 (uc010ezu.3) at chr2:32582096-32843965 - Homo sapiens baculoviral IAP repeat containing 6 (BIRC6), mRNA.
PRKN (uc021zhw.1) at chr6:161768590-163148834 - Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PRKN), transcript variant 1, mRNA.
PRKN (uc010kkd.3) at chr6:161768590-162864505 - Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PRKN), transcript variant 1, mRNA.
PRKN (uc003qtx.4) at chr6:161768590-163148834 - Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PRKN), transcript variant 1, mRNA.
PRKN (uc021zhv.1) at chr6:161768590-163148834 - Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PRKN), transcript variant 1, mRNA.
PRKN (uc021zhu.1) at chr6:161768590-163148834 - Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PRKN), transcript variant 1, mRNA.
GFOD1 (uc031smu.1) at chr6:13364975-13365838 - Homo sapiens glucose-fructose oxidoreductase domain containing 1 (GFOD1), transcript variant 3, mRNA.

NCBI RefSeq genes, curated subset (NM_, NR_, NP_* or YP_*)

NM_001242826.2 at chr12:56595963-56615485
NM_194358.3 at chr12:56595963-56615706
NM_005785.4 at chr12:56595963-56615706
NR_040053.2 at chr12:56595963-56615706
NM_194359.2 at chr12:56596288-56615753

RefSeq Genes

RNF41 at chr12:56596288-56615485 - (NM_001242826) E3 ubiquitin-protein ligase NRDP1 isoform 1
RNF41 at chr12:56596288-56615753 - (NM_194359) E3 ubiquitin-protein ligase NRDP1 isoform 1
RNF41 at chr12:56595963-56615706 - (NM_005785) E3 ubiquitin-protein ligase NRDP1 isoform 1
RNF41 at chr12:56595963-56615706 - (NM_194358) E3 ubiquitin-protein ligase NRDP1 isoform 2
RNF41 at chr12:56595963-56615706 - (NR_040053)

Non-Human RefSeq Genes

rnf41 at chr12:56600234-56607843 - (NM_001141259) E3 ubiquitin-protein ligase NRDP1
RNF41 at chr12:56598286-56610398 - (NM_001194648) E3 ubiquitin-protein ligase NRDP1
Rnf41 at chr12:56599245-56610314 - (NM_001012195) E3 ubiquitin-protein ligase NRDP1
RNF41 at chr12:56599260-56610399 - (NM_001046525) E3 ubiquitin-protein ligase NRDP1
Rnf41 at chr12:56598511-56610397 - (NR_104289) 
Rnf41 at chr12:56598511-56610397 - (NR_104288) 
Rnf41 at chr12:56598511-56610397 - (NR_104290) 
Rnf41 at chr12:56598511-56610397 - (NM_001164237) E3 ubiquitin-protein ligase NRDP1
Rnf41 at chr12:56598511-56610397 - (NM_026259) E3 ubiquitin-protein ligase NRDP1
RNF41 at chr12:56598286-56615705 - (NM_001132802) E3 ubiquitin-protein ligase NRDP1
rnf41 at chr12:56600234-56607855 - (NM_001319939) E3 ubiquitin-protein ligase NRDP1
rnf41.L at chr12:56600231-56607847 - (NM_001094785) uncharacterized protein LOC495085
rnf41.S at chr12:56600231-56607847 - (NM_001095792) E3 ubiquitin-protein ligase NRDP1

Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56601423-56615627

Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

RNF41 at chr12:56595963-56615706
RNF41 at chr12:56596288-56615485
RNF41 at chr12:56599234-56615650
RNF41 at chr12:56599234-56615693
RNF41 at chr12:56600231-56615717
RNF41 at chr12:56600371-56602328
RNF41 at chr12:56600533-56615706
RNF41 at chr12:56601423-56615627
RNF41 at chr12:56601461-56615485
RNF41 at chr12:56601932-56610390
RNF41 at chr12:56603821-56615644
RNF41 at chr12:56604032-56607802

International Knockout Mouse Consortium Genes Mapped to Human Genome

Rnf41_26744 at chr12:56598285-56615735
Rnf41_49851 at chr12:56598285-56615735
Rnf41_69434 at chr12:56598285-56615735
Rnf41_VG18098 at chr12:56598285-56615735

BC032637 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.

 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2158  100.0%         12     -  56599235  56610398  BC032637    20  2177  2207

Non-Human Aligned mRNA Search Results

BC019415 - Mus musculus ring finger protein 41, mRNA (cDNA clone MGC:30902 IMAGE:4014525), complete cds.
JT414040 - TSA: Ictalurus punctatus aby_k35:1935535 mRNA sequence.
BC049078 - Mus musculus ring finger protein 41, mRNA (cDNA clone MGC:61272 IMAGE:6419123), complete cds.
BC083614 - Rattus norvegicus ring finger protein 41, mRNA (cDNA clone MGC:94383 IMAGE:7133774), complete cds.
BC112724 - Bos taurus ring finger protein 41, mRNA (cDNA clone MGC:137581 IMAGE:8179570), complete cds.
BT030518 - Bos taurus ring finger protein 41 (RNF41), mRNA, complete cds.
JU473908 - TSA: Macaca mulatta Mamu_369381 mRNA sequence.
JV045863 - TSA: Macaca mulatta Mamu_436581 mRNA sequence.
BT048819 - Salmo salar clone ssal-rgb2-522-318 E3 ubiquitin-protein ligase NRDP1 putative mRNA, complete cds.
AB173281 - Macaca fascicularis brain cDNA clone: QflA-21852, similar to human ring finger protein 41 (RNF41), transcript variant 3, mRNA, RefSeq: NM_194359.1.

Ensembl Genes

RNF41 at chr12:56603821-56615644 - (ENST00000548225)
RNF41 at chr12:56601461-56615485 - (ENST00000549038)
RNF41 at chr12:56600533-56615706 - (ENST00000551711)
RNF41 at chr12:56600231-56615717 - (ENST00000552656)
RNF41 at chr12:56599234-56615693 - (ENST00000394013)
RNF41 at chr12:56598285-56615705 - (ENST00000345093)
RNF41 at chr12:56599234-56615650 - (ENST00000547967)
RNF41 at chr12:56600371-56602328 - (ENST00000548120)
RNF41 at chr12:56601423-56615627 - (ENST00000552244)
RNF41 at chr12:56601932-56610390 - (ENST00000549119)
RNF41 at chr12:56604032-56607802 - (ENST00000550379)

HUGO Gene Nomenclature

RNF41 at chr12:56595964-56615753

gnomAD Loss of Function Metrics by Gene

RNF41 at chr12:56598285-56615705

gnomAD Loss of Function Metrics by Transcript

ENST00000345093 at chr12:56598285-56615705
ENST00000394013 at chr12:56599234-56615693
ENST00000549038 at chr12:56601461-56615485
ENST00000551711 at chr12:56600533-56615706
ENST00000552244 at chr12:56601423-56615627
ENST00000552656 at chr12:56600231-56615717