Human hg19 RAB11FIP3 UCSC Genome Browser v463

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UCSC Genes

RAB11FIP3 (uc002chf.3) at chr16:475668-572481 - Homo sapiens RAB11 family interacting protein 3 (class II) (RAB11FIP3), transcript variant 1, mRNA.
RAB11FIP3 (uc010uug.2) at chr16:532525-572481 - Homo sapiens RAB11 family interacting protein 3 (class II) (RAB11FIP3), transcript variant 2, mRNA.
RAB11FIP3 (uc010uuf.2) at chr16:524850-572481 - Homo sapiens RAB11 family interacting protein 3 (class II) (RAB11FIP3), transcript variant 2, mRNA.
RAB11B (uc002mju.4) at chr19:8455205-8469317 - Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA.
ASAP1 (uc003yta.2) at chr8:131064351-131455906 - Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 (ASAP1), transcript variant 1, mRNA.
ASAP1 (uc011liw.2) at chr8:131064351-131455906 - Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 (ASAP1), transcript variant 2, mRNA.
RAB11FIP4 (uc002hgn.1) at chr17:29718642-29865232 - Homo sapiens RAB11 family interacting protein 4 (class II) (RAB11FIP4), mRNA.
RAB25 (uc001fnc.3) at chr1:156030966-156040295 - Homo sapiens RAB25, member RAS oncogene family (RAB25), mRNA.
ARF5 (uc003vmb.2) at chr7:127228406-127231759 - Homo sapiens ADP-ribosylation factor 5 (ARF5), mRNA.
EXOC7 (uc002jqs.3) at chr17:74077086-74099868 - Homo sapiens exocyst complex component 7 (EXOC7), transcript variant 4, mRNA.
ARF6 (uc001wxg.4) at chr14:50359736-50363772 - Homo sapiens ADP-ribosylation factor 6 (ARF6), mRNA.
ARF6 (uc021rsu.1) at chr14:50360455-50360982 - Homo sapiens ADP-ribosylation factor 6 (ARF6), mRNA.
RAB11A (uc002apk.3) at chr15:66161797-66184329 - Homo sapiens RAB11A, member RAS oncogene family (RAB11A), transcript variant 1, mRNA.
RACGAP1 (uc001rvs.2) at chr12:50382945-50419307 - Homo sapiens Rac GTPase activating protein 1 (RACGAP1), transcript variant 3, mRNA.
RACGAP1 (uc009zlm.1) at chr12:50382945-50419307 - Homo sapiens Rac GTPase activating protein 1 (RACGAP1), transcript variant 2, mRNA.
RACGAP1 (uc001rvt.2) at chr12:50382945-50419307 - Homo sapiens Rac GTPase activating protein 1 (RACGAP1), transcript variant 1, mRNA.
RACGAP1 (uc001rvu.2) at chr12:50382945-50419307 - Homo sapiens Rac GTPase activating protein 1 (RACGAP1), transcript variant 3, mRNA.

NCBI RefSeq genes, curated subset (NM_, NR_, NP_* or YP_*)

NM_014700.4 at chr16:475649-573011
NM_001370401.1 at chr16:475649-573011
NM_001142272.2 at chr16:524924-573011

RefSeq Genes

RAB11FIP3 at chr16:524924-573011 - (NM_001142272) rab11 family-interacting protein 3 isoform 2
RAB11FIP3 at chr16:475649-573011 - (NM_014700) rab11 family-interacting protein 3 isoform 1
RAB11FIP3 at chr16:475649-573011 - (NM_001370401) rab11 family-interacting protein 3 isoform 3

Non-Human RefSeq Genes

RAB11FIP3 at chr16:532552-570839 - (NM_001168822) rab11 family-interacting protein 3
Rab11fip3 at chr16:475825-572482 - (NM_001162869) rab11 family-interacting protein 3 isoform a
Rab11fip3 at chr16:532524-572482 - (NM_153140) rab11 family-interacting protein 3 isoform c
Rab11fip3 at chr16:475825-572482 - (NM_001162868) rab11 family-interacting protein 3 isoform b

Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476007-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:524850-572478

Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)

RAB11FIP3 at chr16:475649-573011
RAB11FIP3 at chr16:476379-572355
RAB11FIP3 at chr16:524850-572478
RAB11FIP3 at chr16:524869-555605
RAB11FIP3 at chr16:524924-539101
RAB11FIP3 at chr16:524924-553063
RAB11FIP3 at chr16:532657-547448
RAB11FIP3 at chr16:538942-547158
RAB11FIP3 at chr16:552750-569018
RAB11FIP3 at chr16:560453-569108
RAB11FIP3 at chr16:560563-569762

International Knockout Mouse Consortium Genes Mapped to Human Genome

Rab11fip3_69550 at chr16:475668-572481

BC051360 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.

 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 4251  100.0%         16     +    475668    572481  BC051360     1  4251  4272

Non-Human Aligned mRNA Search Results

BC081997 - Rattus norvegicus RAB11 family interacting protein 3 (class II), mRNA (cDNA clone MGC:94219 IMAGE:7130781), complete cds.
BC023364 - Mus musculus RAB11 family interacting protein 3 (class II), mRNA (cDNA clone IMAGE:5043679), complete cds.
BC037132 - Synthetic construct Mus musculus RAB11 family interacting protein 3 (class II), mRNA (cDNA clone IMAGE:4973426), complete cds.
JU326121 - TSA: Macaca mulatta Mamu_523534 mRNA sequence.

Ensembl Genes

RAB11FIP3 at chr16:560453-569108 - (ENST00000461009)
RAB11FIP3 at chr16:538942-547158 - (ENST00000495663)
RAB11FIP3 at chr16:524924-539101 - (ENST00000483002)
RAB11FIP3 at chr16:524869-555605 - (ENST00000452814)
RAB11FIP3 at chr16:476379-572355 - (ENST00000434585)
RAB11FIP3 at chr16:475619-573011 - (ENST00000262305)
RAB11FIP3 at chr16:475668-572478 - (ENST00000457159)
RAB11FIP3 at chr16:524850-572478 - (ENST00000450428)
RAB11FIP3 at chr16:524924-553063 - (ENST00000449879)
RAB11FIP3 at chr16:532657-547448 - (ENST00000412256)
RAB11FIP3 at chr16:552750-569018 - (ENST00000487899)
RAB11FIP3 at chr16:560563-569762 - (ENST00000464263)

Vega Protein-Coding Annotations

OTTHUMT00000109066 at chr16:475619-573011
OTTHUMT00000317787 at chr16:476379-572355
OTTHUMT00000139676 at chr16:524869-555605
OTTHUMT00000313691 at chr16:524924-553063
OTTHUMT00000313690 at chr16:524924-539101
OTTHUMT00000139678 at chr16:532657-547448
OTTHUMT00000139677 at chr16:538942-547158
OTTHUMT00000139679 at chr16:552750-569018
OTTHUMT00000313682 at chr16:560453-569108
OTTHUMT00000139680 at chr16:560563-569762

HUGO Gene Nomenclature

RAB11FIP3 at chr16:475650-573011

gnomAD Loss of Function Metrics by Gene

RAB11FIP3 at chr16:475619-573011

gnomAD Loss of Function Metrics by Transcript

ENST00000262305 at chr16:475619-573011
ENST00000412256 at chr16:532657-547448
ENST00000434585 at chr16:476379-572355
ENST00000449879 at chr16:524924-553063
ENST00000450428 at chr16:524850-572478
ENST00000452814 at chr16:524869-555605
ENST00000457159 at chr16:475668-572478