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UCSC Genes

PRDM16 (uc001akf.3) at chr1:2985742-3355185 - Homo sapiens PR domain containing 16 (PRDM16), transcript variant 1, mRNA.
PRDM16 (uc009vlh.3) at chr1:2985742-3355185 - Homo sapiens PR domain containing 16 (PRDM16), transcript variant 1, mRNA.
PRDM16 (uc001ake.3) at chr1:2985742-3355185 - Homo sapiens PR domain containing 16 (PRDM16), transcript variant 2, mRNA.
PRDM16 (uc001akc.3) at chr1:2985742-3355185 - Homo sapiens PR domain containing 16 (PRDM16), transcript variant 2, mRNA.
CTBP1 (uc003gcv.1) at chr4:1205228-1242908 - Homo sapiens C-terminal binding protein 1 (CTBP1), transcript variant 1, mRNA.
CTBP1 (uc003gcw.3) at chr4:1205236-1242908 - Homo sapiens C-terminal binding protein 1 (CTBP1), transcript variant 1, mRNA.
CTBP2 (uc009yal.3) at chr10:126676418-126849103 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
CTBP2 (uc001lih.4) at chr10:126676418-126849624 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 3, mRNA.
CTBP2 (uc009yak.3) at chr10:126676418-126847285 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
CTBP2 (uc001lif.4) at chr10:126676418-126849103 - Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.
SKI (uc001aja.4) at chr1:2160134-2241652 - Homo sapiens v-ski sarcoma viral oncogene homolog (avian) (SKI), mRNA.
CEBPA (uc002nun.3) at chr19:33790840-33793430 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), alpha (CEBPA), mRNA.
CEBPD (uc003xqh.1) at chr8:48649476-48650726 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), delta (CEBPD), mRNA.
PPARGC1B (uc003lrc.3) at chr5:149109815-149234585 - Homo sapiens peroxisome proliferator-activated receptor gamma, coactivator 1 beta (PPARGC1B), transcript variant 1, mRNA.
PPARG (uc003bwx.3) at chr3:12393001-12475855 - Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 2, mRNA.
PPARG (uc003bwu.3) at chr3:12330436-12475855 - Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 3, mRNA.
PPARG (uc003bws.3) at chr3:12329349-12475855 - Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 4, mRNA.
PPARG (uc003bwr.3) at chr3:12329349-12475855 - Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 1, mRNA.
PPARG (uc031rym.1) at chr3:12328984-12475855 - Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 1, mRNA.
PPARA (uc003bgx.1) at chr22:46546499-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 3, mRNA.
PPARA (uc003bgw.1) at chr22:46546499-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc010hab.1) at chr22:46546731-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc003bhb.1) at chr22:46572650-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc003bha.3) at chr22:46572650-46616543 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARGC1A (uc003gqs.3) at chr4:23793644-23891700 - Homo sapiens peroxisome proliferator-activated receptor gamma, coactivator 1 alpha (PPARGC1A), mRNA.
CEBPB (uc002xvi.2) at chr20:48807120-48809227 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB), mRNA.
SMAD3 (uc002aqj.3) at chr15:67358195-67487533 - Homo sapiens SMAD family member 3 (SMAD3), transcript variant 1, mRNA.
SMAD3 (uc010ujt.2) at chr15:67458493-67487533 - Homo sapiens SMAD family member 3 (SMAD3), transcript variant 4, mRNA.
SMAD3 (uc010ujr.2) at chr15:67418054-67487533 - Homo sapiens SMAD family member 3 (SMAD3), transcript variant 2, mRNA.
SMAD2 (uc002lcz.4) at chr18:45359466-45457517 - Homo sapiens SMAD family member 2 (SMAD2), transcript variant 2, mRNA.
SMAD2 (uc002lcy.4) at chr18:45359466-45456970 - Homo sapiens SMAD family member 2 (SMAD2), transcript variant 1, mRNA.
HDAC1 (uc001bvb.1) at chr1:32757708-32799224 - Homo sapiens histone deacetylase 1 (HDAC1), mRNA.
HDAC1 (uc010ohf.1) at chr1:32757993-32799224 - Homo sapiens histone deacetylase 1 (HDAC1), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_199454.2 at chr1:2985742-3355185
NM_022114.3 at chr1:2985742-3355185

RefSeq Genes

PRDM16-DT at chr1:2980636-2984289 - (NR_024371) 
PRDM16-DT at chr1:2976181-2984289 - (NR_015440) 
PRDM16 at chr1:2985767-3355185 - (NM_022114) histone-lysine N-methyltransferase PRDM16 isoform 1
PRDM16 at chr1:2985767-3355185 - (NM_199454) histone-lysine N-methyltransferase PRDM16 isoform 2

Non-Human RefSeq Genes

Prdm16 at chr1:2985710-3355182 - (NM_001291029) histone-lysine N-methyltransferase PRDM16 isoform 4
Prdm16 at chr1:2985710-3355182 - (NM_001291026) histone-lysine N-methyltransferase PRDM16 isoform 3
Prdm16 at chr1:2985710-3355182 - (NM_001177995) histone-lysine N-methyltransferase PRDM16 isoform 2
Prdm16 at chr1:2985710-3355182 - (NM_027504) histone-lysine N-methyltransferase PRDM16 isoform 1

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985767-3355185
PRDM16 at chr1:2985775-3350906

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985767-3355185
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985767-3355185
PRDM16 at chr1:2985775-3350906

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985767-3355185
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from GENCODE Version 19

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489

Comprehensive Gene Annotation Set from GENCODE Version 19

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985747-3103155
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659
PRDM16 at chr1:3341780-3342636

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3341483-3350659

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3341483-3350659

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3312884-3355183
PRDM16 at chr1:3341483-3350659

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

PRDM16 at chr1:2985732-3350906
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985742-3355183
PRDM16 at chr1:2985761-3351985
PRDM16 at chr1:2985775-3350906
PRDM16 at chr1:2985775-3355185
PRDM16 at chr1:3154495-3350489
PRDM16 at chr1:3160696-3303482
PRDM16 at chr1:3312884-3355183
PRDM16 at chr1:3313055-3350857
PRDM16 at chr1:3341483-3350659

International Knockout Mouse Consortium Genes Mapped to Human Genome

Prdm16_118271 at chr1:2985742-3355185
Prdm16_32672 at chr1:2985742-3355185
Prdm16_32673 at chr1:2985742-3355185
Prdm16_32674 at chr1:2985742-3355185
Prdm16_65742 at chr1:2985742-3355185

Human Aligned mRNA Search Results

BC161614 - Homo sapiens PR domain containing 16, mRNA (cDNA clone MGC:166915 IMAGE:8860117), complete cds.
AF294278 - Homo sapiens PR-domain-containing protein 16 (PRDM16) mRNA, complete cds.
FR719953 - Homo sapiens mRNA for translocation breakpoint in acute myeloid leukemia (ETV6-PRDM16 gene fusion).

Human Unaligned mRNA Search Results

NR_024371 - Homo sapiens PRDM16 divergent transcript (PRDM16-DT), transcript variant 2, long non-coding RNA.
NR_015440 - Homo sapiens PRDM16 divergent transcript (PRDM16-DT), transcript variant 1, long non-coding RNA.

Non-Human Aligned mRNA Search Results

BC059838 - Mus musculus PR domain containing 16, mRNA (cDNA clone MGC:69644 IMAGE:6409778), complete cds.
DQ851827 - Danio rerio PR domain containing 16 (prdm16) mRNA, partial cds.
AB172687 - Macaca fascicularis brain cDNA clone: QflA-19224, similar to human PR domain containing 16 (PRDM16), transcript variant 2, mRNA, RefSeq: NM_199454.1.
AB172686 - Macaca fascicularis brain cDNA clone: QflA-19221, similar to human PR domain containing 16 (PRDM16), transcript variant 2, mRNA, RefSeq: NM_199454.1.

Ensembl Genes

PRDM16 at chr1:3341483-3350659 - (ENST00000378389)
PRDM16 at chr1:3160696-3303482 - (ENST00000463591)
PRDM16 at chr1:2985775-3350906 - (ENST00000514189)
PRDM16 at chr1:2985761-3351985 - (ENST00000378391)
PRDM16 at chr1:2985742-3355183 - (ENST00000378398)
PRDM16 at chr1:2985742-3355183 - (ENST00000442529)
PRDM16 at chr1:2985732-3350906 - (ENST00000511072)
PRDM16 at chr1:2985742-3355183 - (ENST00000441472)
PRDM16 at chr1:2985747-3103155 - (ENST00000607632)
PRDM16 at chr1:2985775-3355185 - (ENST00000270722)
PRDM16 at chr1:3154495-3350489 - (ENST00000512462)
PRDM16 at chr1:3313055-3350857 - (ENST00000509860)
PRDM16 at chr1:3341780-3342636 - (ENST00000606170)

Vega Protein-Coding Annotations

OTTHUMT00000367522 at chr1:2985732-3350906
OTTHUMT00000001384 at chr1:2985761-3351985
OTTHUMT00000001382 at chr1:2985775-3355185
OTTHUMT00000367523 at chr1:2985775-3350906
OTTHUMT00000367524 at chr1:3154495-3350489
OTTHUMT00000001508 at chr1:3160696-3303482
OTTHUMT00000001383 at chr1:3313055-3350857
OTTHUMT00000099319 at chr1:3341483-3350659