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UCSC Genes

PAX1 (uc002wsj.3) at chr20:21686297-21699124 - Homo sapiens paired box 1 (PAX1), transcript variant 1, mRNA.
PAX1 (uc010zsm.3) at chr20:21686861-21699124 - Homo sapiens paired box 1 (PAX1), transcript variant 2, mRNA.
PAX1 (uc010zsl.3) at chr20:21686297-21699124 - Homo sapiens paired box 1 (PAX1), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_006192.4 at chr20:21686297-21699124
NM_001257096.1 at chr20:21686297-21699124

RefSeq Genes

PAX1 at chr20:21686297-21699124 - (NM_001257096) paired box protein Pax-1 isoform 2
PAX1 at chr20:21686302-21699119 - (NM_006192) paired box protein Pax-1 isoform 1

Non-Human RefSeq Genes

pax1 at chr20:21687075-21687695 - (NM_001172049) paired box protein Pax-1
pax1 at chr14:37132113-37132598 - (NM_001172049) paired box protein Pax-1
Pax1 at chr20:21687063-21695205 - (NM_001107787) paired box protein Pax-1
Pax1 at chr20:21686297-21696608 - (NM_008780) paired box protein Pax-1
pax1.S at chr20:21687075-21689338 - (NM_001096982) paired box 1 S homeolog
pax1a at chr14:37132095-37132505 - (NM_001080592) paired box protein Pax-1

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686297-21699124
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from GENCODE Version 19

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from GENCODE Version 19

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

PAX1 at chr20:21686297-21696620
PAX1 at chr20:21686325-21690062
PAX1 at chr20:21686861-21695747
PAX1 at chr20:21688908-21689915

International Knockout Mouse Consortium Genes Mapped to Human Genome

Pax1_46433 at chr20:21686297-21696620
Pax1_73537 at chr20:21686297-21696620

BC069134 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1320  100.0%         20     +  21687075  21695441  BC069134     4  1323  1323

Non-Human Aligned mRNA Search Results

BC157672 - Xenopus tropicalis paired box 1, mRNA (cDNA clone IMAGE:8928046), partial cds.
EU241891 - Petromyzon marinus Pax1/9b (Pax1/9b) mRNA, complete cds.
AB187121 - Oryzias latipes pax1 mRNA for paired-box transcription factor pax1, complete cds.
EU196402 - Scyliorhinus canicula Pax1 mRNA, complete cds.
KX499463 - Clarias batrachus Pax1 (pax1) mRNA, complete cds.
BC140989 - Mus musculus paired box gene 1, mRNA (cDNA clone MGC:175950 IMAGE:9055601), complete cds.
KP168465 - Terebratalia transversa Pax1/9 (Pax1/9) mRNA, complete cds.
EU196401 - Petromyzon marinus Pax1/9 mRNA, complete cds.
HF567443 - Xenopus laevis mRNA for paired box 10b (Pax10b gene).
HF567442 - Xenopus laevis mRNA for paired box 10a (Pax10a gene).
AB080656 - Mus musculus Pax1 mRNA, partial cds, clone:A430036B21.
AB080657 - Mus musculus Pax1 mRNA, partial cds, clone:5832438N23.
DQ667149 - Xenopus laevis paired box protein 1 (Pax1) mRNA, complete cds.
EF524559 - Trachemys scripta paired-box protein 1 (Pax1) mRNA, partial cds.
JQ929179 - Xenopus laevis paired box transcription factor (Pax1) mRNA, complete cds.
KT906514 - Maylandia zebra paired box 1 (pax1) mRNA, partial cds.
AB647258 - Scyliorhinus torazame pax1 mRNA for paired box gene 1, complete cds.

Ensembl Genes

PAX1 at chr20:21686861-21695747 - (ENST00000444366)
PAX1 at chr20:21686297-21696620 - (ENST00000398485)
PAX1 at chr20:21686325-21690062 - (ENST00000460221)
PAX1 at chr20:21688908-21689915 - (ENST00000485038)

Vega Protein-Coding Annotations

OTTHUMT00000078282 at chr20:21686297-21696620
OTTHUMT00000337554 at chr20:21686325-21690062
OTTHUMT00000337553 at chr20:21686861-21695747
OTTHUMT00000337555 at chr20:21688908-21689915