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UCSC Genes

NUP54 (uc003hjs.3) at chr4:77035817-77069655 - Homo sapiens nucleoporin 54kDa (NUP54), mRNA.
NUP54 (uc011cbt.2) at chr4:77035817-77069655 - Homo sapiens nucleoporin 54kDa (NUP54), mRNA.
NUP54 (uc011cbs.2) at chr4:77035817-77069655 - Homo sapiens nucleoporin 54kDa (NUP54), mRNA.
NUP54 (uc010ije.3) at chr4:77035817-77069655 - Homo sapiens nucleoporin 54kDa (NUP54), mRNA.
NUP54 (uc003hjt.3) at chr4:77035817-77069655 - Homo sapiens nucleoporin 54kDa (NUP54), mRNA.
NUP93 (uc002eka.3) at chr16:56764017-56878861 - Homo sapiens nucleoporin 93kDa (NUP93), transcript variant 1, mRNA.
NUP93 (uc010vhi.2) at chr16:56817413-56878861 - Homo sapiens nucleoporin 93kDa (NUP93), transcript variant 3, mRNA.
NUP93 (uc002ekb.3) at chr16:56815704-56878861 - Homo sapiens nucleoporin 93kDa (NUP93), transcript variant 2, mRNA.
NUPL1 (uc001uqi.3) at chr13:25875666-25916561 - Homo sapiens nucleoporin like 1 (NUPL1), transcript variant 1, mRNA.
NUP62 (uc002pqx.3) at chr19:50410084-50432799 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 5, mRNA.
NUP62 (uc002pra.3) at chr19:50410084-50432988 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 2, mRNA.
NUP62 (uc002pqz.3) at chr19:50410084-50432988 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 2, mRNA.
NUP62 (uc002pqy.3) at chr19:50410084-50432988 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 2, mRNA.
NUP62 (uc021uya.1) at chr19:50411496-50413064 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 1, mRNA.
NUP62 (uc002prc.3) at chr19:50411362-50432988 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 2, mRNA.
NUP62 (uc002prb.4) at chr19:50410084-50432796 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 2, mRNA.
NUP62 (uc031rmh.1) at chr19:50412231-50432761 - Homo sapiens nucleoporin 62kDa (NUP62), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NR_103782.1 at chr4:77035812-77069668
NM_017426.3 at chr4:77035812-77069668
NR_103780.1 at chr4:77035812-77069668
NR_103781.1 at chr4:77035812-77069668
NM_001278603.1 at chr4:77035812-77069668

RefSeq Genes

NUP54 at chr4:77035812-77069668 - (NR_103780) 
NUP54 at chr4:77035812-77069668 - (NR_103781) 
NUP54 at chr4:77035812-77069668 - (NR_103782) 
NUP54 at chr4:77035812-77069668 - (NM_001278603) nucleoporin p54 isoform 2
NUP54 at chr4:77035817-77069550 - (NM_017426) nucleoporin p54 isoform 1

Non-Human RefSeq Genes

nup54 at chr4:77036558-77065627 - (NM_001140250) nucleoporin p54
nup54 at chr4:77036510-77065627 - (NM_001017349) nucleoporin p54
nup54 at chr4:77036558-77057536 - (NM_001001948) nucleoporin p54
NUP54 at chr4:77035917-77069549 - (NM_001075285) nucleoporin p54
nup54.S at chr4:77036519-77065446 - (NM_001089733) nucleoporin 54kDa S homeolog
Nup54 at chr4:77035910-77069544 - (NM_001359995) nuclear pore complex protein Nup54 isoform 1
Nup54 at chr4:77035910-77069544 - (NM_017361) nuclear pore complex protein Nup54
Nup54 at chr4:77035910-77069544 - (NM_183392) nuclear pore complex protein Nup54 isoform 2

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

NUP54 at chr4:77035817-77069550
NUP54 at chr4:77036359-77069550

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069550
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036359-77069550

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036359-77069550

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036359-77069550

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from GENCODE Version 19

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77055329-77069530

Comprehensive Gene Annotation Set from GENCODE Version 19

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77055329-77069530

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77055329-77069530

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77055329-77069530

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

NUP54 at chr4:77035812-77052004
NUP54 at chr4:77035812-77069569
NUP54 at chr4:77035817-77069668
NUP54 at chr4:77035818-77069552
NUP54 at chr4:77036240-77069558
NUP54 at chr4:77036257-77051854
NUP54 at chr4:77036359-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036454-77069550
NUP54 at chr4:77036591-77039590
NUP54 at chr4:77045733-77069597
NUP54 at chr4:77053473-77055464
NUP54 at chr4:77055329-77069530
NUP54 at chr4:77057341-77069355
NUP54 at chr4:77057474-77068974
NUP54 at chr4:77065283-77069551
NUP54 at chr4:77065283-77069587
NUP54 at chr4:77065302-77066973
NUP54 at chr4:77065337-77069353
NUP54 at chr4:77065350-77069550

International Knockout Mouse Consortium Genes Mapped to Human Genome

Nup54_34059 at chr4:77035817-77069655
Nup54_34060 at chr4:77035817-77069655
Nup54_82622 at chr4:77035817-77069655

Alias of STS Marker

NUP54 at chr4:76936042-77136205 - (RH41401)

Human Aligned mRNA Search Results

AF157322 - Homo sapiens nucleoporin p54 protein (NUP54) mRNA, complete cds.
AK315160 - Homo sapiens cDNA, FLJ96134, Homo sapiens nucleoporin 54kDa (NUP54), mRNA.

Human Unaligned mRNA Search Results

NR_103780 - Homo sapiens nucleoporin 54 (NUP54), transcript variant 3, non-coding RNA.
NR_103781 - Homo sapiens nucleoporin 54 (NUP54), transcript variant 4, non-coding RNA.
NR_103782 - Homo sapiens nucleoporin 54 (NUP54), transcript variant 5, non-coding RNA.

Non-Human Aligned mRNA Search Results

JX993586 - Xenopus laevis Nup54 mRNA, complete cds.
JU175309 - TSA: Crotalus adamanteus Cadam_Nup54, mRNA sequence.
CR848625 - Xenopus tropicalis finished cDNA, clone TGas114o17.
BC135328 - Xenopus tropicalis nucleoporin 54, mRNA (cDNA clone MGC:121376 IMAGE:7606162), complete cds.
BC068114 - Mus musculus nucleoporin 54, mRNA (cDNA clone MGC:92978 IMAGE:5707888), complete cds.
BC078858 - Rattus norvegicus nucleoporin 54, mRNA (cDNA clone MGC:93519 IMAGE:7134682), complete cds.
BC114015 - Bos taurus nucleoporin 54kDa, mRNA (cDNA clone MGC:137666 IMAGE:8009279), complete cds.
JU335025 - TSA: Macaca mulatta Mamu_523069 mRNA sequence.
JU476027 - TSA: Macaca mulatta Mamu_381818 mRNA sequence.
JV047395 - TSA: Macaca mulatta Mamu_437178 mRNA sequence.
BT045518 - Salmo salar clone ssal-rgf-523-346 Nucleoporin p54 putative mRNA, complete cds.
AB169303 - Macaca fascicularis testis cDNA, clone: QtsA-18807, similar to human nucleoporin 54kDa (NUP54), mRNA, RefSeq: NM_017426.2.

Ensembl Genes

NUP54 at chr4:77065337-77069353 - (ENST00000510884)
NUP54 at chr4:77065283-77069551 - (ENST00000514901)
NUP54 at chr4:77057474-77068974 - (ENST00000506098)
NUP54 at chr4:77055329-77069530 - (ENST00000515460)
NUP54 at chr4:77045733-77069597 - (ENST00000504173)
NUP54 at chr4:77036454-77069550 - (ENST00000512151)
NUP54 at chr4:77036359-77069550 - (ENST00000514987)
NUP54 at chr4:77036240-77069558 - (ENST00000502850)
NUP54 at chr4:77035817-77069668 - (ENST00000264883)
NUP54 at chr4:77035812-77069569 - (ENST00000507257)
NUP54 at chr4:77035812-77052004 - (ENST00000508604)
NUP54 at chr4:77035818-77069552 - (ENST00000342467)
NUP54 at chr4:77036257-77051854 - (ENST00000508465)
NUP54 at chr4:77036454-77069550 - (ENST00000458189)
NUP54 at chr4:77036591-77039590 - (ENST00000513248)
NUP54 at chr4:77053473-77055464 - (ENST00000514313)
NUP54 at chr4:77057341-77069355 - (ENST00000514307)
NUP54 at chr4:77065283-77069587 - (ENST00000508583)
NUP54 at chr4:77065302-77066973 - (ENST00000510569)
NUP54 at chr4:77065350-77069550 - (ENST00000513352)

Vega Protein-Coding Annotations

OTTHUMT00000362701 at chr4:77035812-77052004
OTTHUMT00000362697 at chr4:77035812-77069569
OTTHUMT00000252402 at chr4:77035817-77069668
OTTHUMT00000362698 at chr4:77036240-77069558
OTTHUMT00000362813 at chr4:77036257-77051854
OTTHUMT00000362699 at chr4:77036359-77069550
OTTHUMT00000362700 at chr4:77036454-77069550
OTTHUMT00000362814 at chr4:77036591-77039590
OTTHUMT00000362812 at chr4:77045733-77069597
OTTHUMT00000362811 at chr4:77053473-77055464
OTTHUMT00000362804 at chr4:77055329-77069530
OTTHUMT00000362807 at chr4:77057341-77069355
OTTHUMT00000362809 at chr4:77057474-77068974
OTTHUMT00000362805 at chr4:77065283-77069551
OTTHUMT00000362803 at chr4:77065283-77069587
OTTHUMT00000362810 at chr4:77065302-77066973
OTTHUMT00000362808 at chr4:77065337-77069353
OTTHUMT00000362806 at chr4:77065350-77069550

Pfam Domains in UCSC Genes

Nup54 at chr4:77038901-77053685