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Gencode Genes

NPHP3-ACAD11 (ENST00000632629.1) at chr3:132644838-132684770 - NPHP3-ACAD11 readthrough (NMD candidate) (from HGNC NPHP3-ACAD11)
NPHP3-AS1 (ENST00000504440.1) at chr3:132722342-132874223 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 1, long non-coding RNA. (from RefSeq NR_002811)
NPHP3 (ENST00000337331.10) at chr3:132680609-132722409 - Homo sapiens nephrocystin 3 (NPHP3), mRNA. (from RefSeq NM_153240)
NPHP3 (ENST00000515289.2) at chr3:132691226-132695156 - nephrocystin 3 (from HGNC NPHP3)
NPHP3 (ENST00000512094.5) at chr3:132681628-132684685 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YAM4)
NPHP3 (ENST00000493732.5) at chr3:132681282-132684823 - nephrocystin 3 (from HGNC NPHP3)
NPHP3 (ENST00000490993.5) at chr3:132681431-132717355 - nephrocystin 3 (from HGNC NPHP3)
NPHP3-AS1 (ENST00000489343.5) at chr3:132721750-132750777 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 2, long non-coding RNA. (from RefSeq NR_152743)
NPHP3 (ENST00000476742.1) at chr3:132705674-132716813 - nephrocystin 3 (from HGNC NPHP3)
NPHP3 (ENST00000474871.5) at chr3:132680609-132694870 - nephrocystin 3 (from HGNC NPHP3)
NPHP3-ACAD11 (ENST00000471702.2) at chr3:132558142-132722459 - Homo sapiens NPHP3-ACAD11 readthrough (NMD candidate) (NPHP3-ACAD11), long non-coding RNA. (from RefSeq NR_037804)
NPHP3 (ENST00000471145.1) at chr3:132717993-132721707 - nephrocystin 3 (from HGNC NPHP3)
NPHP3 (ENST00000469232.5) at chr3:132700004-132722007 - nephrocystin 3 (from HGNC NPHP3)
NPHP3 (ENST00000465756.5) at chr3:132681625-132722404 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt F2Z3A8)
NPHP3 (ENST00000383282.3) at chr3:132721445-132722414 - Required for normal ciliary development and function.  Inhibits disheveled-1-induced canonical Wnt-signaling activity and  may also play a role in the control of non-canonical Wnt signaling  which regulates planar cell polarity. Probably acts as a molecular  switch between different Wnt signaling pathways. Required for  proper convergent extension cell movements. (from UniProt Q7Z494)
ACAD11 (ENST00000496418.5) at chr3:132558138-132659649 - Homo sapiens acyl-CoA dehydrogenase family member 11 (ACAD11), transcript variant 2, non-coding RNA. (from RefSeq NR_132426)
ACAD11 (ENST00000469042.5) at chr3:132558824-132660082 - Homo sapiens acyl-CoA dehydrogenase family member 11 (ACAD11), transcript variant 3, non-coding RNA. (from RefSeq NR_132427)
ACAD11 (ENST00000485198.5) at chr3:132558472-132660066 - Homo sapiens acyl-CoA dehydrogenase family member 11 (ACAD11), transcript variant 4, non-coding RNA. (from RefSeq NR_132428)
UNC119B (ENST00000344651.5) at chr12:120710458-120723640 - Homo sapiens unc-119 lipid binding chaperone B (UNC119B), mRNA. (from RefSeq NM_001080533)
ACAD11 (ENST00000264990.11) at chr3:132558141-132659809 - Homo sapiens acyl-CoA dehydrogenase family member 11 (ACAD11), transcript variant 1, mRNA. (from RefSeq NM_032169)
UNC119 (ENST00000335765.8) at chr17:28546707-28552668 - Homo sapiens unc-119 lipid binding chaperone (UNC119), transcript variant 1, mRNA. (from RefSeq NM_005148)
UNC119 (ENST00000301032.8) at chr17:28546708-28552631 - Homo sapiens unc-119 lipid binding chaperone (UNC119), transcript variant 2, mRNA. (from RefSeq NM_054035)
CEP164 (ENST00000278935.8) at chr11:117327854-117413266 - Homo sapiens centrosomal protein 164 (CEP164), transcript variant 1, mRNA. (from RefSeq NM_014956)
RP2 (ENST00000218340.4) at chrX:46837043-46882358 - Homo sapiens RP2 activator of ARL3 GTPase (RP2), mRNA. (from RefSeq NM_006915)
ARL3 (ENST00000260746.6) at chr10:102673731-102714397 - Homo sapiens ADP ribosylation factor like GTPase 3 (ARL3), mRNA. (from RefSeq NM_004311)
INVS (ENST00000374921.3) at chr9:100099288-100130903 - Required for normal renal development and establishment  of left-right axis. Probably acts as a molecular switch between  different Wnt signaling pathways. Inhibits the canonical Wnt  pathway by targeting cytoplasmic disheveled (DVL1) for degradation  by the ubiquitin-proteasome. This suggests that it is required in  renal development to oppose the repression of terminal  differentiation of tubular epithelial cells by Wnt signaling.  Involved in the organization of apical junctions in kidney cells  together with NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity).  Does not seem to be strictly required for ciliogenesis (By  similarity). (from UniProt Q9Y283)
INVS (ENST00000262456.6) at chr9:100099275-100300788 - Required for normal renal development and establishment  of left-right axis. Probably acts as a molecular switch between  different Wnt signaling pathways. Inhibits the canonical Wnt  pathway by targeting cytoplasmic disheveled (DVL1) for degradation  by the ubiquitin-proteasome. This suggests that it is required in  renal development to oppose the repression of terminal  differentiation of tubular epithelial cells by Wnt signaling.  Involved in the organization of apical junctions in kidney cells  together with NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity).  Does not seem to be strictly required for ciliogenesis (By  similarity). (from UniProt Q9Y283)
INVS (ENST00000262457.7) at chr9:100099243-100302175 - Homo sapiens inversin (INVS), transcript variant 6, non-coding RNA. (from RefSeq NR_134606)
NPHP1 (ENST00000316534.8) at chr2:110122311-110205042 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 1, mRNA. (from RefSeq NM_000272)
NPHP1 (ENST00000445609.6) at chr2:110123336-110204992 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 3, mRNA. (from RefSeq NM_001128178)
NPHP1 (ENST00000393272.7) at chr2:110123336-110205066 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 2, mRNA. (from RefSeq NM_207181)
NPHP1 (ENST00000355301.8) at chr2:110123708-110204972 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 4, mRNA. (from RefSeq NM_001128179)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_153240.5 at chr3:132680609-132722409
NR_037804.1 at chr3:132558138-132722459
NR_152743.1 at chr3:132721750-132750777
NR_002811.2 at chr3:132721750-132874211

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

NPHP3 at chr3:132680609-132722409

RefSeq Genes

NPHP3 at chr3:132680609-132722409 - (NM_153240) nephrocystin-3
NPHP3-ACAD11 at chr3:132558138-132722459 - (NR_037804) 
NPHP3-AS1 at chr3:132721750-132874211 - (NR_002811) 
NPHP3-AS1 at chr3:132721750-132750777 - (NR_152743) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NPHP3-ACAD11 readthrough (NMD candidate) at chr3:132558138-132722459 - (NR_037804.1)
NPHP3 antisense RNA 1, transcript variant 1 at chr3:132721750-132874211 - (NR_002811.2)
NPHP3 antisense RNA 1, transcript variant 2 at chr3:132721750-132750777 - (NR_152743.1)

Non-Human RefSeq Genes

Nphp3 at chr3:132681909-132722355 - (NM_001191882) nephrocystin-3
NPHP3 at chr3:132681859-132722355 - (NM_001192152) nephrocystin-3
Nphp3 at chr3:132705726-132722374 - (NM_172460) nephrocystin-3 isoform b
Nphp3 at chr3:132681846-132722374 - (NM_028721) nephrocystin-3 isoform a
nphp3 at chr3:132681973-132722358 - (NM_001079265) nephrocystin-3
nphp3 at chr3:132681961-132722355 - (NM_001202441) nephrocystin-3
nphp3.L at chr3:132681973-132722319 - (NM_001093226) nephrocystin-3

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

NPHP3 at chr3:132680609-132722409
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132680609-132722409
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NPHP3 at chr3:132680609-132722409
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132680609-132722409
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NPHP3 at chr3:132681628-132722442

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NPHP3 at chr3:132681628-132722442

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NPHP3 at chr3:132681628-132722442

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132721445-132722414

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707
NPHP3 at chr3:132721445-132722414

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NPHP3 at chr3:132681628-132722442

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NPHP3 at chr3:132680609-132694870
NPHP3 at chr3:132681282-132684823
NPHP3 at chr3:132681431-132717355
NPHP3 at chr3:132681625-132722404
NPHP3 at chr3:132681628-132684685
NPHP3 at chr3:132681628-132722442
NPHP3 at chr3:132691226-132695156
NPHP3 at chr3:132700004-132722007
NPHP3 at chr3:132705674-132716813
NPHP3 at chr3:132717993-132721707

Retroposed Genes V9, Including Pseudogenes

NPHP3 at chr4:92582554-92582986 - (BC063277.1-1115)
NPHP3 at chr1:61835369-61835967 - (BC063277.1-67)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Nphp3_102794 at chr3:132680610-132722432
Nphp3_115733 at chr3:132680610-132722432
Nphp3_116532 at chr3:132680610-132722432
Nphp3_116533 at chr3:132680610-132722432
Nphp3_80804 at chr3:132680610-132722432
Nphp3_VG16736 at chr3:132680610-132722432

Human Aligned mRNA Search Results

BC068082 - Homo sapiens nephronophthisis 3 (adolescent), mRNA (cDNA clone IMAGE:6213558), complete cds.
AY257864 - Homo sapiens nephrocystin 3 (NPHP3) mRNA, complete cds.
AY257865 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.
AY257866 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.
AY257867 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.

Human Unaligned mRNA Search Results

NR_037804 - Homo sapiens NPHP3-ACAD11 readthrough (NMD candidate) (NPHP3-ACAD11), long non-coding RNA.
NR_002811 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 1, long non-coding RNA.
NR_152743 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 2, long non-coding RNA.

Non-Human Aligned mRNA Search Results

BC115724 - Mus musculus nephronophthisis 3 (adolescent), mRNA (cDNA clone MGC:141550 IMAGE:40086844), complete cds.
MG135046 - Synthetic construct Xenopus tropicalis clone IMAGE:7675189 nephronophthisis 3 (adolescent) (nphp3) gene, encodes complete protein.
JT414795 - TSA: Ictalurus punctatus aby_k45:1378495 mRNA sequence.
BC125709 - Xenopus tropicalis nephronophthisis 3 (adolescent), mRNA (cDNA clone MGC:146010 IMAGE:7675189), complete cds.
AY259499 - Mus musculus nephrocystin 3 (Nphp3) mRNA, complete cds; alternatively spliced.
AY259500 - Mus musculus nephrocystin 3 (Nphp3) mRNA, partial cds; alternatively spliced.
JU327151 - TSA: Macaca mulatta Mamu_518730 mRNA sequence.
JU331404 - TSA: Macaca mulatta Mamu_537787 mRNA sequence.

GeneReviews

NPHP3 at chr3:132680609-132722409