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UCSC Genes

NPHP3-AS1 (uc003epg.1) at chr3:132441186-132593050 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), non-coding RNA.
NPHP3 (uc003epe.2) at chr3:132399453-132441303 - Homo sapiens nephronophthisis 3 (adolescent) (NPHP3), mRNA.
NPHP3-ACAD11 (uc011blr.1) at chr3:132297640-132345918 - Homo sapiens NPHP3-ACAD11 readthrough (NPHP3-ACAD11), non-coding RNA.
NPHP3-AS1 (uc010htu.2) at chr3:132441186-132469621 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), non-coding RNA.
NPHP3 (uc003epf.2) at chr3:132418762-132441303 - Homo sapiens nephronophthisis 3 (adolescent) (NPHP3), mRNA.
NPHP3 (uc003epd.2) at chr3:132399453-132419292 - Homo sapiens nephronophthisis 3 (adolescent) (NPHP3), mRNA.
NPHP3-ACAD11 (uc003eoz.1) at chr3:132363641-132403638 - Homo sapiens NPHP3-ACAD11 readthrough (NPHP3-ACAD11), non-coding RNA.
UNC119B (uc001tyz.4) at chr12:121148238-121161443 - Homo sapiens unc-119 homolog B (C. elegans) (UNC119B), mRNA.
UNC119 (uc002hbk.2) at chr17:26873725-26879646 - Homo sapiens unc-119 homolog (C. elegans) (UNC119), transcript variant 1, mRNA.
INVS (uc010mtb.2) at chr9:102861502-103063426 - Homo sapiens inversin (INVS), transcript variant 1, mRNA.
RP2 (uc004dgw.4) at chrX:46696347-46741791 - Homo sapiens retinitis pigmentosa 2 (X-linked recessive) (RP2), mRNA.
CEP164 (uc001prc.3) at chr11:117198571-117283982 - Homo sapiens centrosomal protein 164kDa (CEP164), transcript variant 1, mRNA.
ARL3 (uc001kwa.3) at chr10:104433484-104474190 - Homo sapiens ADP-ribosylation factor-like 3 (ARL3), mRNA.
INVS (uc004bap.2) at chr9:102861502-103063426 - Homo sapiens inversin (INVS), transcript variant 1, mRNA.
INVS (uc004bar.2) at chr9:102861502-103063426 - Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA.
INVS (uc010mta.3) at chr9:102861502-103046885 - Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA.
NPHP1 (uc002tfn.4) at chr2:110880914-110962639 - Homo sapiens nephronophthisis 1 (juvenile) (NPHP1), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_153240.4 at chr3:132399453-132441303
NR_037804.1 at chr3:132276982-132441303
NR_002811.1 at chr3:132441186-132593050

RefSeq Genes

NPHP3 at chr3:132399453-132441253 - (NM_153240) nephrocystin-3
NPHP3-ACAD11 at chr3:132276982-132441303 - (NR_037804) 
NPHP3-AS1 at chr3:132440594-132593055 - (NR_002811) 
NPHP3-AS1 at chr3:132440594-132469621 - (NR_152743) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NPHP3 antisense RNA 1 at chr3:132441186-132593050 - (NR_002811.1)
NPHP3-ACAD11 readthrough (NMD candidate) at chr3:132276982-132441303 - (NR_037804.1)

Non-Human RefSeq Genes

Nphp3 at chr3:132400754-132441199 - (NM_001191882) nephrocystin-3
NPHP3 at chr3:132400703-132441199 - (NM_001192152) nephrocystin-3
Nphp3 at chr3:132424443-132441218 - (NM_172460) nephrocystin-3 isoform b
Nphp3 at chr3:132399451-132441218 - (NM_028721) nephrocystin-3 isoform a
nphp3 at chr3:132400817-132441202 - (NM_001079265) nephrocystin-3
nphp3 at chr3:132400805-132441199 - (NM_001202441) nephrocystin-3
nphp3.L at chr3:132400817-132441199 - (NM_001093226) nephrocystin-3

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

NPHP3 at chr3:132399453-132441253
NPHP3 at chr3:132440289-132441258

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399453-132441253
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132440289-132441258

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

NPHP3 at chr3:132399453-132441253
NPHP3 at chr3:132440289-132441258

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399453-132441253
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132440289-132441258

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132440289-132441258

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132440289-132441258

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132440289-132441258

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132440289-132441258

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

NPHP3 at chr3:132400472-132441286

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551

Basic Gene Annotation Set from GENCODE Version 19

NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Comprehensive Gene Annotation Set from GENCODE Version 19

NPHP3 at chr3:132276986-132441303
NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

NPHP3 at chr3:132276986-132441303
NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

NPHP3 at chr3:132276986-132441303
NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

NPHP3 at chr3:132360842-132431295
NPHP3 at chr3:132363683-132441276
NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

NPHP3 at chr3:132276986-132441303
NPHP3 at chr3:132360842-132431295
NPHP3 at chr3:132363683-132441276
NPHP3 at chr3:132399453-132413714
NPHP3 at chr3:132399454-132441276
NPHP3 at chr3:132400126-132403667
NPHP3 at chr3:132400275-132436199
NPHP3 at chr3:132400469-132441248
NPHP3 at chr3:132400472-132403529
NPHP3 at chr3:132400472-132441286
NPHP3 at chr3:132410070-132414000
NPHP3 at chr3:132418848-132440851
NPHP3 at chr3:132424518-132435657
NPHP3 at chr3:132436837-132440551
NPHP3 at chr3:132436912-132441276
NPHP3 at chr3:132440559-132441232

Retroposed Genes V5, Including Pseudogenes

NPHP3 at chr1:62301041-62301639 - (BC063277.1-81)
NPHP3 at chr1:62301041-62301639 - (BC063277.1-81)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Nphp3_102794 at chr3:132399454-132441276
Nphp3_115733 at chr3:132399454-132441276
Nphp3_116532 at chr3:132399454-132441276
Nphp3_116533 at chr3:132399454-132441276
Nphp3_80804 at chr3:132399454-132441276
Nphp3_VG16736 at chr3:132399454-132441276

Human Aligned mRNA Search Results

BC068082 - Homo sapiens nephronophthisis 3 (adolescent), mRNA (cDNA clone IMAGE:6213558), complete cds.
AY257864 - Homo sapiens nephrocystin 3 (NPHP3) mRNA, complete cds.
AY257865 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.
AY257866 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.
AY257867 - Homo sapiens nephrocystin 3 splice variant (NPHP3) mRNA, partial cds.

Human Unaligned mRNA Search Results

NR_037804 - Homo sapiens NPHP3-ACAD11 readthrough (NMD candidate) (NPHP3-ACAD11), long non-coding RNA.
NR_002811 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 1, long non-coding RNA.
NR_152743 - Homo sapiens NPHP3 antisense RNA 1 (NPHP3-AS1), transcript variant 2, long non-coding RNA.

Non-Human Aligned mRNA Search Results

BC115724 - Mus musculus nephronophthisis 3 (adolescent), mRNA (cDNA clone MGC:141550 IMAGE:40086844), complete cds.
MG135046 - Synthetic construct Xenopus tropicalis clone IMAGE:7675189 nephronophthisis 3 (adolescent) (nphp3) gene, encodes complete protein.
JT414795 - TSA: Ictalurus punctatus aby_k45:1378495 mRNA sequence.
BC125709 - Xenopus tropicalis nephronophthisis 3 (adolescent), mRNA (cDNA clone MGC:146010 IMAGE:7675189), complete cds.
AY259499 - Mus musculus nephrocystin 3 (Nphp3) mRNA, complete cds; alternatively spliced.
AY259500 - Mus musculus nephrocystin 3 (Nphp3) mRNA, partial cds; alternatively spliced.
JU327151 - TSA: Macaca mulatta Mamu_518730 mRNA sequence.
JU331404 - TSA: Macaca mulatta Mamu_537787 mRNA sequence.

Ensembl Genes

NPHP3-AS1 at chr3:132440594-132469621 - (ENST00000489343)
NPHP3 at chr3:132436912-132441276 - (ENST00000343113)
NPHP3 at chr3:132424518-132435657 - (ENST00000476742)
NPHP3 at chr3:132410070-132414000 - (ENST00000515289)
NPHP3 at chr3:132400472-132441286 - (ENST00000337331)
NPHP3 at chr3:132400275-132436199 - (ENST00000490993)
NPHP3 at chr3:132399454-132441276 - (ENST00000326682)
NPHP3 at chr3:132276986-132441303 - (ENST00000471702)
NPHP3 at chr3:132399453-132413714 - (ENST00000474871)
NPHP3 at chr3:132400126-132403667 - (ENST00000493732)
NPHP3 at chr3:132400469-132441248 - (ENST00000465756)
NPHP3 at chr3:132400472-132403529 - (ENST00000512094)
NPHP3 at chr3:132418848-132440851 - (ENST00000469232)
NPHP3 at chr3:132436837-132440551 - (ENST00000471145)
NPHP3 at chr3:132440559-132441232 - (ENST00000383282)
NPHP3-AS1 at chr3:132441186-132593067 - (ENST00000504440)

GeneReviews

NPHP3 at chr3:132399453-132441303

Vega Protein-Coding Annotations

OTTHUMT00000357015 at chr3:132276986-132441303
OTTHUMT00000357019 at chr3:132399453-132413714
OTTHUMT00000357021 at chr3:132400126-132403667
OTTHUMT00000357018 at chr3:132400275-132436199
OTTHUMT00000357016 at chr3:132400469-132441248
OTTHUMT00000357020 at chr3:132400472-132441286
OTTHUMT00000358314 at chr3:132400472-132403529
OTTHUMT00000358313 at chr3:132410070-132414000
OTTHUMT00000357017 at chr3:132418848-132440851
OTTHUMT00000357043 at chr3:132424518-132435657
OTTHUMT00000357042 at chr3:132436837-132440551