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Gencode Genes

NPAS2 (ENST00000335681.10) at chr2:100820139-100996829 - Homo sapiens neuronal PAS domain protein 2 (NPAS2), mRNA. (from RefSeq NM_002518)
NPAS2 (ENST00000495559.1) at chr2:100988310-100996822 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000492373.1) at chr2:100934111-100964918 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000490052.1) at chr2:100994443-100996055 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000486017.5) at chr2:100925146-100964176 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000474550.5) at chr2:100970601-100996055 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000471974.1) at chr2:100974803-100982636 - neuronal PAS domain protein 2 (from HGNC NPAS2)
NPAS2 (ENST00000451740.1) at chr2:100925162-100937842 - Contains 1 basic helix-loop-helix (bHLH) domain. (from UniProt H7C0J4)
NPAS2 (ENST00000450763.1) at chr2:100974866-100993527 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H7BZY5)
NPAS2 (ENST00000448812.5) at chr2:100925146-100971049 - Contains 1 PAC (PAS-associated C-terminal) domain. (from UniProt H7BZA3)
NPAS2 (ENST00000433408.1) at chr2:100982254-100996055 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H7C080)
NPAS2 (ENST00000427413.5) at chr2:100821025-100948299 - Contains 1 bHLH (basic helix-loop-helix) domain. (from UniProt H7C0Z2)
PER3 (ENST00000377532.7) at chr1:7784654-7845177 - Component of the circadian clock mechanism which is  essential for generating circadian rhythms. Can bind heme. (from UniProt P56645)
ARNTL2 (ENST00000542388.1) at chr12:27368336-27420590 - ARNTL2-CLOCK heterodimers activate E-box element (5'-  CACGTG-5') transcription. Also, in umbilical vein endothelial  cells, activates SERPINE1 through E-box sites. This  transactivation is inhibited by PER2 and CRY1. (from UniProt Q8WYA1)
ARNTL2 (ENST00000544915.5) at chr12:27332854-27425289 - ARNTL2-CLOCK heterodimers activate E-box element (5'-  CACGTG-5') transcription. Also, in umbilical vein endothelial  cells, activates SERPINE1 through E-box sites. This  transactivation is inhibited by PER2 and CRY1. (from UniProt Q8WYA1)
CRY2 (ENST00000616080.2) at chr11:45847475-45883244 - Homo sapiens cryptochrome circadian regulator 2 (CRY2), transcript variant 1, mRNA. (from RefSeq NM_021117)
CRY2 (ENST00000417225.6) at chr11:45847118-45881233 - Homo sapiens cryptochrome circadian regulator 2 (CRY2), transcript variant 2, mRNA. (from RefSeq NM_001127457)
PER3 (ENST00000361923.2) at chr1:7784703-7845177 - Homo sapiens period circadian regulator 3 (PER3), transcript variant 4, mRNA. (from RefSeq NM_016831)
PER3 (ENST00000613533.4) at chr1:7784429-7845176 - Homo sapiens period circadian regulator 3 (PER3), transcript variant 1, mRNA. (from RefSeq NM_001289862)
CRY1 (ENST00000008527.10) at chr12:106991364-107093549 - Homo sapiens cryptochrome circadian regulator 1 (CRY1), mRNA. (from RefSeq NM_004075)
ARNTL (ENST00000403510.7) at chr11:13277842-13387263 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 22, mRNA. (from RefSeq NM_001351818)
ARNTL (ENST00000403290.5) at chr11:13277831-13387266 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 9, mRNA. (from RefSeq NM_001351824)
ARNTL2 (ENST00000266503.9) at chr12:27333055-27420894 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like 2 (ARNTL2), transcript variant 1, mRNA. (from RefSeq NM_020183)
ARNTL2 (ENST00000546179.5) at chr12:27332920-27420549 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like 2 (ARNTL2), transcript variant 5, mRNA. (from RefSeq NM_001248005)
ARNTL2 (ENST00000311001.9) at chr12:27333055-27420533 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like 2 (ARNTL2), transcript variant 2, mRNA. (from RefSeq NM_001248002)
ARNTL2 (ENST00000261178.9) at chr12:27333055-27420590 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like 2 (ARNTL2), transcript variant 4, mRNA. (from RefSeq NM_001248004)
ARNTL2 (ENST00000395901.6) at chr12:27332920-27420533 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like 2 (ARNTL2), transcript variant 3, mRNA. (from RefSeq NM_001248003)
TIMELESS (ENST00000229201.4) at chr12:56417119-56449403 - Homo sapiens timeless circadian regulator (TIMELESS), transcript variant 2, mRNA. (from RefSeq NM_001330295)
TIMELESS (ENST00000553532.6) at chr12:56416363-56449426 - Homo sapiens timeless circadian regulator (TIMELESS), transcript variant 3, non-coding RNA. (from RefSeq NR_138471)
CLOCK (ENST00000309964.8) at chr4:55427903-55510027 - ARNTL/2-CLOCK heterodimers activate E-box element (5'-  CACGTG-3') transcription of a number of proteins of the circadian  clock. Activates transcription of PER1 and PER2. This  transcription is inhibited in a feedback loop by PER and CRY  proteins. Has intrinsic histone acetyltransferase activity and  this enzymatic function contributes to chromatin-remodeling events  implicated in circadian control of gene expression (By  similarity). Acetylates primarily histones H3 and H4 (By  similarity). Acetylates also a non-histone substrate: ARNTL (By  similarity). Plays a role in DNA damage response (DDR) signaling  during the S phase. (from UniProt O15516)
PER2 (ENST00000254657.8) at chr2:238244044-238288610 - Homo sapiens period circadian regulator 2 (PER2), mRNA. (from RefSeq NM_022817)
PER1 (ENST00000317276.9) at chr17:8140472-8152404 - Homo sapiens period circadian regulator 1 (PER1), mRNA. (from RefSeq NM_002616)
CLOCK (ENST00000381322.5) at chr4:55434823-55545932 - Homo sapiens clock circadian regulator (CLOCK), transcript variant 1, mRNA. (from RefSeq NM_001267843)
CLOCK (ENST00000513440.6) at chr4:55427903-55546909 - Homo sapiens clock circadian regulator (CLOCK), transcript variant 2, mRNA. (from RefSeq NM_004898)
ARNTL (ENST00000389707.8) at chr11:13277798-13387266 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 27, non-coding RNA. (from RefSeq NR_147788)
ARNTL (ENST00000401424.5) at chr11:13277798-13387266 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 32, non-coding RNA. (from RefSeq NR_147791)
ARNTL (ENST00000403482.7) at chr11:13356878-13387266 - Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 33, mRNA. (from RefSeq NM_001351811)
CSNK1D (ENST00000392334.6) at chr17:82244362-82273697 - Homo sapiens casein kinase 1 delta (CSNK1D), transcript variant 3, non-coding RNA. (from RefSeq NR_110578)
CSNK1D (ENST00000314028.10) at chr17:82242667-82273731 - Homo sapiens casein kinase 1 delta (CSNK1D), transcript variant 1, mRNA. (from RefSeq NM_001893)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_002518.3 at chr2:100820151-100996825

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011511242.2 at chr2:100820183-100996829
XM_011511243.2 at chr2:100821025-100986661
XM_017004215.1 at chr2:100821025-100994580
XM_017004217.1 at chr2:100821025-100996720
XM_017004216.1 at chr2:100821025-100996720
XM_005263959.2 at chr2:100821025-100996772
XM_005263960.2 at chr2:100821025-100996829
XM_017004214.1 at chr2:100821025-100996829
XM_005263953.2 at chr2:100821025-100996829
XM_005263961.4 at chr2:100932910-100996829

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

NPAS2 at chr2:100820139-100996829

RefSeq Genes

NPAS2 at chr2:100820139-100996829 - (NM_002518) neuronal PAS domain-containing protein 2
NPAS2-AS1 at chr2:100972648-100977161 - (NR_110213) 

Non-Human RefSeq Genes

npas2 at chr2:100904752-100982356 - (NM_178299) circadian clock protein PASD1
NPAS2 at chr2:100904731-100996824 - (NM_001083763) neuronal PAS domain-containing protein 2
NPAS2 at chr2:100904755-100996706 - (NM_001030542) neuronal PAS domain-containing protein 2
Npas2 at chr2:100821015-100996825 - (NM_001108214) neuronal PAS domain-containing protein 2
Npas2 at chr2:100821015-100996828 - (NM_008719) neuronal PAS domain-containing protein 2

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NPAS2 at chr2:100820139-100996829

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NPAS2 at chr2:100820139-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NPAS2 at chr2:100820152-100996829

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NPAS2 at chr2:100820152-100996829
NPAS2 at chr2:100821025-100948299
NPAS2 at chr2:100925146-100964176
NPAS2 at chr2:100925146-100971049
NPAS2 at chr2:100925162-100937842
NPAS2 at chr2:100934111-100964918
NPAS2 at chr2:100970601-100996055
NPAS2 at chr2:100974803-100982636
NPAS2 at chr2:100974866-100993527
NPAS2 at chr2:100982254-100996055
NPAS2 at chr2:100988310-100996822
NPAS2 at chr2:100994443-100996055

International Knockout Mouse Consortium Genes Mapped to Human Genome

Npas2_102752 at chr2:100820151-100996825
Npas2_77194 at chr2:100820151-100996825

Human Aligned mRNA Search Results

BC028107 - Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone IMAGE:5248433), partial cds.
KJ534892 - Homo sapiens clone NPAS2_iso-A_adult-A01 neuronal PAS domain protein 2 isoform A (NPAS2) mRNA, partial cds, alternatively spliced.
BC051351 - Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:59643 IMAGE:6538324), complete cds.
BC072383 - Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:71151 IMAGE:6371187), complete cds.
U77970 - Human neuronal PAS2 (NPAS2) mRNA, complete cds.

Non-Human Aligned mRNA Search Results

KF724976 - Emberiza melanocephala NPAS2 mRNA, partial cds.
BC168989 - Rattus norvegicus neuronal PAS domain protein 2, mRNA (cDNA clone IMAGE:7371458), partial cds.
BC134580 - Bos taurus neuronal PAS domain protein 2, mRNA (cDNA clone MGC:142974 IMAGE:8316207), complete cds.
JX035866 - Gadus morhua neuronal PAS domain-containing protein 2 (npas2) mRNA, partial cds.
BC163256 - Danio rerio neuronal PAS domain protein 2, mRNA (cDNA clone MGC:194560 IMAGE:9038393), complete cds.
BC109166 - Mus musculus neuronal PAS domain protein 2, mRNA (cDNA clone MGC:129355 IMAGE:40048145), complete cds.
U77969 - Mus musculus neuronal PAS2 (Npas2) mRNA, complete cds.
JU334687 - TSA: Macaca mulatta Mamu_506749 mRNA sequence.
KJ173769 - Emberiza bruniceps neuronal PAS domain protein 2 (NPAS2) mRNA, partial cds.
KM025032 - Oncorhynchus kisutch NPAS 2 (NPAS2) mRNA, partial cds.
AB173468 - Macaca fascicularis brain cDNA clone: QflA-22685, similar to human neuronal PAS domain protein 2 (NPAS2), mRNA, RefSeq: NM_002518.2.