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Gencode Genes

NLGN2 (ENST00000575301.5) at chr17:7404874-7418684 - Transmembrane scaffolding protein involved in cell-cell  interactions via its interactions with neurexin family members.  Mediates cell-cell interactions both in neurons and in other types  of cells, such as Langerhans beta cells. Plays a role in synapse  function and synaptic signal transmission, especially via gamma-  aminobutyric acid receptors (GABA(A) receptors). Functions by  recruiting and clustering synaptic proteins. Promotes clustering  of postsynaptic GABRG2 and GPHN. Modulates signaling by inhibitory  synapses, and thereby plays a role in controlling the ratio of  signaling by excitatory and inhibitory synapses and information  processing. Required for normal signal amplitude from inhibitory  synapses, but is not essential for normal signal frequency. May  promote the initial formation of synapses, but is not essential  for this. In vitro, triggers the de novo formation of presynaptic  structures. Mediates cell-cell interactions between Langerhans  beta cells and modulates insulin secretion (By similarity). (from UniProt Q8NFZ4)
NLGN2 (ENST00000639647.1) at chr17_KV575245v1_fix:25331-39141 - Transmembrane scaffolding protein involved in cell-cell  interactions via its interactions with neurexin family members.  Mediates cell-cell interactions both in neurons and in other types  of cells, such as Langerhans beta cells. Plays a role in synapse  function and synaptic signal transmission, especially via gamma-  aminobutyric acid receptors (GABA(A) receptors). Functions by  recruiting and clustering synaptic proteins. Promotes clustering  of postsynaptic GABRG2 and GPHN. Modulates signaling by inhibitory  synapses, and thereby plays a role in controlling the ratio of  signaling by excitatory and inhibitory synapses and information  processing. Required for normal signal amplitude from inhibitory  synapses, but is not essential for normal signal frequency. May  promote the initial formation of synapses, but is not essential  for this. In vitro, triggers the de novo formation of presynaptic  structures. Mediates cell-cell interactions between Langerhans  beta cells and modulates insulin secretion (By similarity). (from UniProt Q8NFZ4)
NLGN2 (ENST00000572893.1) at chr17:7405356-7408509 - neuroligin 2 (from HGNC NLGN2)
NLGN2 (ENST00000570940.1) at chr17:7408641-7415128 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt I3L498)
NLGN2 (ENST00000302926.7) at chr17:7407845-7419860 - Homo sapiens neuroligin 2 (NLGN2), mRNA. (from RefSeq NM_020795)
NLGN2 (ENST00000640833.1) at chr17_KV575245v1_fix:25813-28966 - neuroligin 2 (from HGNC NLGN2)
NLGN2 (ENST00000640620.2) at chr17_KV575245v1_fix:28302-40317 - Homo sapiens neuroligin 2 (NLGN2), mRNA. (from RefSeq NM_020795)
NLGN2 (ENST00000639804.1) at chr17_KV575245v1_fix:29098-35585 - neuroligin 2 (from HGNC NLGN2)
PATJ (ENST00000484937.5) at chr1:61805510-62163504 - Scaffolding protein that may bring different proteins  into adjacent positions at the cell membrane. May regulate protein  targeting, cell polarity and integrity of tight junctions. May  regulate the surface expression and/or function of ASIC3 in  sensory neurons. (from UniProt Q8NI35)
PATJ (ENST00000371158.6) at chr1:61742477-62163920 - Homo sapiens PATJ crumbs cell polarity complex component (PATJ), transcript variant 1, mRNA. (from RefSeq NM_176877)
NRXN2 (ENST00000301894.6) at chr11:64606174-64643315 - Homo sapiens neurexin 2 (NRXN2), transcript variant beta, mRNA. (from RefSeq NM_138734)
DLG3 (ENST00000542398.1) at chrX:70455096-70505485 - Homo sapiens discs large MAGUK scaffold protein 3 (DLG3), transcript variant 3, mRNA. (from RefSeq NM_001166278)
DLG3 (ENST00000374355.7) at chrX:70452305-70505487 - Homo sapiens discs large MAGUK scaffold protein 3 (DLG3), transcript variant 2, mRNA. (from RefSeq NM_020730)
DLG3 (ENST00000374360.8) at chrX:70444835-70505490 - Homo sapiens discs large MAGUK scaffold protein 3 (DLG3), transcript variant 1, mRNA. (from RefSeq NM_021120)
NRXN3 (ENST00000557594.5) at chr14:79279339-79862478 - Homo sapiens neurexin 3 (NRXN3), transcript variant 4, mRNA. (from RefSeq NM_001272020)
NRXN3 (ENST00000428277.6) at chr14:79279906-79864417 - Homo sapiens neurexin 3 (NRXN3), transcript variant 3, mRNA. (from RefSeq NM_001105250)
NRXN3 (ENST00000281127.11) at chr14:79279413-79868290 - Homo sapiens neurexin 3 (NRXN3), transcript variant 2, mRNA. (from RefSeq NM_138970)
NRXN1 (ENST00000342183.9) at chr2:49920763-50347754 - Homo sapiens neurexin 1 (NRXN1), transcript variant beta1, mRNA. (from RefSeq NM_138735)
DLG4 (ENST00000302955.11) at chr17:7189890-7217609 - Homo sapiens discs large MAGUK scaffold protein 4 (DLG4), transcript variant 2, mRNA. (from RefSeq NM_001128827)
NRXN1 (ENST00000401710.5) at chr2:49921307-50347766 - Homo sapiens neurexin 1 (NRXN1), transcript variant beta3, mRNA. (from RefSeq NM_001330092)
DLG4 (ENST00000648172.1) at chr17:7187169-7219841 - Homo sapiens discs large MAGUK scaffold protein 4 (DLG4), transcript variant 1, mRNA. (from RefSeq NM_001365)
DLG4 (ENST00000399506.7) at chr17:7189890-7217644 - Homo sapiens discs large MAGUK scaffold protein 4 (DLG4), transcript variant 4, mRNA. (from RefSeq NM_001321075)
NRXN1 (ENST00000406316.6) at chr2:49918505-51032561 - Homo sapiens neurexin 1 (NRXN1), transcript variant alpha1, mRNA. (from RefSeq NM_004801)
NRXN1 (ENST00000404971.5) at chr2:49920350-51032399 - Homo sapiens neurexin 1 (NRXN1), transcript variant alpha2, mRNA. (from RefSeq NM_001135659)
NRXN1 (ENST00000625672.2) at chr2:49918505-51028456 - Homo sapiens neurexin 1 (NRXN1), transcript variant alpha5, mRNA. (from RefSeq NM_001330082)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_020795.3 at chr17:7408183-7419864
NM_020795.3 at chr17_KV575245v1_fix:28640-40321

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017024897.1 at chr17:7405492-7419860
XM_005256744.4 at chr17:7408181-7419860

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

NLGN2 at chr17:7407845-7419860

RefSeq Genes

NLGN2 at chr17:7407845-7419860 - (NM_020795) neuroligin-2 precursor
NLGN2 at chr17_KV575245v1_fix:28302-40317 - (NM_020795) neuroligin-2 precursor

Non-Human RefSeq Genes

nlgn2 at chr17:7408379-7417670 - (NM_001173493) neuroligin-2
nlgn2 at chr17_KV575245v1_fix:28836-38127 - (NM_001173493) neuroligin-2
nlgn2 at chr17_KV575245v1_fix:28836-38127 - (NM_001291388) neuroligin-2
nlgn2 at chr17:7408379-7417670 - (NM_001291388) neuroligin-2
NLGN2 at chr17_KV575245v1_fix:25466-40317 - (NM_001278449) neuroligin-2 precursor
NLGN2 at chr17:7408214-7419860 - (NM_001278449) neuroligin-2 precursor
nlgn2 at chr17_KV575245v1_fix:28836-38094 - (NM_001201507) neuroligin 2b precursor
nlgn2 at chr17:7408379-7417637 - (NM_001201507) neuroligin 2b precursor
Nlgn2 at chr17_KV575245v1_fix:25761-39046 - (NM_053992) neuroligin-2 precursor
Nlgn2 at chr17:7405304-7418674 - (NM_053992) neuroligin-2 precursor
Nlgn2 at chr17:7407848-7419861 - (NM_198862) neuroligin-2 precursor
Nlgn2 at chr17_KV575245v1_fix:28673-40318 - (NM_198862) neuroligin-2 precursor
Nlgn2 at chr17_KV575245v1_fix:25341-40317 - (NM_001364137) neuroligin-2 precursor
Nlgn2 at chr17:7404884-7419860 - (NM_001364137) neuroligin-2 precursor
NLGN2 at chr17_KV575245v1_fix:28713-40317 - (NM_001191242) neuroligin-2 precursor
NLGN2 at chr17:7408256-7419860 - (NM_001191242) neuroligin-2 precursor
nlgn2a at chr17:7408379-7417670 - (NM_001166329) neuroligin 2b precursor
nlgn2a at chr17_KV575245v1_fix:28836-38127 - (NM_001166329) neuroligin 2b precursor
nlgn2a at chr17:7408379-7417670 - (NM_001267665) neuroligin 2a
nlgn2a at chr17_KV575245v1_fix:28836-38127 - (NM_001267665) neuroligin 2a
nlgn2a at chr17_KV575245v1_fix:28836-38094 - (NM_001173492) neuroligin 2a
nlgn2a at chr17:7408379-7417637 - (NM_001173492) neuroligin 2a
nlgn2b at chr17:7408379-7417637 - (NM_001166336) neuroligin 2b
nlgn2b at chr17_KV575245v1_fix:28836-38094 - (NM_001166336) neuroligin 2b
nlgn2b at chr17_KV575245v1_fix:28836-38094 - (NM_001267667) neuroligin 2b
nlgn2b at chr17:7408379-7417637 - (NM_001267667) neuroligin 2b

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7407845-7419860
NLGN2 at chr17_KV575245v1_fix:25331-39141
NLGN2 at chr17_KV575245v1_fix:28302-40317

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7407845-7419860
NLGN2 at chr17:7408641-7415128
NLGN2 at chr17_KV575245v1_fix:25331-39141
NLGN2 at chr17_KV575245v1_fix:25813-28966
NLGN2 at chr17_KV575245v1_fix:28302-40317
NLGN2 at chr17_KV575245v1_fix:29098-35585

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17_KV575245v1_fix:25331-39141
NLGN2 at chr17_KV575245v1_fix:28640-40317

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128
NLGN2 at chr17_KV575245v1_fix:25331-39141
NLGN2 at chr17_KV575245v1_fix:25813-28966
NLGN2 at chr17_KV575245v1_fix:28640-40317
NLGN2 at chr17_KV575245v1_fix:29098-35585

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7408183-7419860

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NLGN2 at chr17:7404874-7418684
NLGN2 at chr17:7405356-7408509
NLGN2 at chr17:7408183-7419860
NLGN2 at chr17:7408641-7415128

International Knockout Mouse Consortium Genes Mapped to Human Genome

Nlgn2_37111 at chr17:7408183-7419860
Nlgn2_49776 at chr17:7408183-7419860
Nlgn2_70119 at chr17:7408183-7419860
Nlgn2_VG17992 at chr17:7408183-7419860

Non-Human Aligned mRNA Search Results

BC056478 - Mus musculus neuroligin 2, mRNA (cDNA clone IMAGE:5686403), complete cds.
BC154379 - Bos taurus neuroligin 2, mRNA (cDNA clone IMAGE:8081499), partial cds.
GQ489192 - Danio rerio neuroligin 2b (nlgn2b) mRNA, complete cds.
GQ489199 - Takifugu rubripes neuroligin 2b (nlgn2b) mRNA, complete cds.
GQ489223 - Gasterosteus aculeatus neuroligin 2b (nlgn2b) mRNA, complete cds.
GQ489229 - Tetraodon nigroviridis neuroligin 2b (nlgn2b) mRNA, complete cds.
GQ489191 - Danio rerio neuroligin 2a (nlgn2a) mRNA, complete cds.
GQ489198 - Takifugu rubripes neuroligin 2a (nlgn2a) mRNA, complete cds.
GQ489213 - Oryzias latipes neuroligin 2a (nlgn2a) mRNA, partial cds.
GQ489222 - Gasterosteus aculeatus neuroligin 2a (nlgn2a) mRNA, complete cds.
GQ489228 - Tetraodon nigroviridis neuroligin 2a (nlgn2a) mRNA, partial cds.
BC156101 - Synthetic construct Mus musculus clone IMAGE:100062360, MGC:190853 neuroligin 2 (Nlgn2) mRNA, encodes complete protein.
BC156963 - Synthetic construct Mus musculus clone IMAGE:100063645, MGC:191105 neuroligin 2 (Nlgn2) mRNA, encodes complete protein.
JU328290 - TSA: Macaca mulatta Mamu_517075 mRNA sequence.
HM775324 - Anas platyrhynchos neuroligin 2 (NLGN2) mRNA, partial cds.
GQ489218 - Monodelphis domestica neuroligin 2 (nlgn2) mRNA, partial cds.
MH215559 - Octodon degus neuroligin 2 (nlgn2) mRNA, complete cds.
GQ489209 - Anolis carolinensis neuroligin 2 (nlgn2) mRNA, complete cds.
GQ489214 - Oryzias latipes neuroligin 2b (nlgn2) mRNA, complete cds.
GQ489236 - Xenopus (Silurana) tropicalis neuroligin 2 (nlgn2) mRNA, partial cds.