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Gencode Genes

NINL (ENST00000422516.5) at chr20:25452826-25585517 - Homo sapiens ninein like (NINL), transcript variant 2, mRNA. (from RefSeq NM_001318226)
NINL (ENST00000496509.2) at chr20:25455673-25462742 - ninein like (from HGNC NINL)
NINL (ENST00000489780.5) at chr20:25481838-25491525 - ninein like (from HGNC NINL)
NINL (ENST00000464285.5) at chr20:25452837-25458976 - ninein like (from HGNC NINL)
NINL (ENST00000461642.2) at chr20:25488983-25496803 - ninein like (from HGNC NINL)
NINL (ENST00000336104.5) at chr20:25462383-25479027 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0Y2V7)
NINL (ENST00000278886.11) at chr20:25452697-25585531 - Homo sapiens ninein like (NINL), transcript variant 1, mRNA. (from RefSeq NM_025176)
LCA5 (ENST00000392959.5) at chr6:79484991-79537430 - Homo sapiens lebercilin LCA5 (LCA5), transcript variant 1, mRNA. (from RefSeq NM_181714)
LCA5 (ENST00000369846.9) at chr6:79484991-79537430 - Homo sapiens lebercilin LCA5 (LCA5), transcript variant 2, mRNA. (from RefSeq NM_001122769)
USH2A (ENST00000307340.8) at chr1:215622891-216423448 - Homo sapiens usherin (USH2A), transcript variant 2, mRNA. (from RefSeq NM_206933)
USH2A (ENST00000366942.3) at chr1:216173946-216423396 - Homo sapiens usherin (USH2A), transcript variant 1, mRNA. (from RefSeq NM_007123)
NEK2 (ENST00000366999.9) at chr1:211662772-211675621 - Homo sapiens NIMA related kinase 2 (NEK2), transcript variant 1, mRNA. (from RefSeq NM_002497)
NEK2 (ENST00000366998.4) at chr1:211666430-211675557 - Homo sapiens NIMA related kinase 2 (NEK2), transcript variant 2, mRNA. (from RefSeq NM_001204183)
TUBGCP4 (ENST00000564079.5) at chr15:43371115-43409771 - Homo sapiens tubulin gamma complex associated protein 4 (TUBGCP4), transcript variant 2, mRNA. (from RefSeq NM_014444)
TUBGCP4 (ENST00000260383.11) at chr15:43371101-43405573 - Homo sapiens tubulin gamma complex associated protein 4 (TUBGCP4), transcript variant 1, mRNA. (from RefSeq NM_001286414)
FZR1 (ENST00000441788.6) at chr19:3506273-3538330 - Homo sapiens fizzy and cell division cycle 20 related 1 (FZR1), transcript variant 2, mRNA. (from RefSeq NM_016263)
FZR1 (ENST00000395095.7) at chr19:3522990-3534836 - Homo sapiens fizzy and cell division cycle 20 related 1 (FZR1), transcript variant 1, mRNA. (from RefSeq NM_001136198)
FZR1 (ENST00000313639.8) at chr19:3522990-3534836 - Homo sapiens fizzy and cell division cycle 20 related 1 (FZR1), transcript variant 3, mRNA. (from RefSeq NM_001136197)
CDC20 (ENST00000372462.1) at chr1:43359013-43363203 - Required for full ubiquitin ligase activity of the  anaphase promoting complex/cyclosome (APC/C) and may confer  substrate specificity upon the complex. Is regulated by MAD2L1: in  metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and  in anaphase the CDC20-APC/C binary complex is active in degrading  substrates. The CDC20-APC/C complex positively regulates the  formation of synaptic vesicle clustering at active zone to the  presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced  degradation of NEUROD2 induces presynaptic differentiation. (from UniProt Q12834)
CDC20 (ENST00000310955.11) at chr1:43358981-43363203 - Homo sapiens cell division cycle 20 (CDC20), mRNA. (from RefSeq NM_001255)
FZR1 (ENST00000652521.1) at chr19:3506363-3536002 - Key regulator of ligase activity of the anaphase  promoting complex/cyclosome (APC/C), which confers substrate  specificity upon the complex. Associates with the APC/C in late  mitosis, in replacement of CDC20, and activates the APC/C during  anaphase and telophase. The APC/C remains active in degrading  substrates to ensure that positive regulators of the cell cycle do  not accumulate prematurely. At the G1/S transition FZR1 is  phosphorylated, leading to its dissociation from the APC/C.  Following DNA damage, it is required for the G2 DNA damage  checkpoint: its dephosphorylation and reassociation with the APC/C  leads to the ubiquitination of PLK1, preventing entry into  mitosis. (from UniProt Q9UM11)
PLK1 (ENST00000300093.9) at chr16:23678889-23690367 - Homo sapiens polo like kinase 1 (PLK1), mRNA. (from RefSeq NM_005030)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_025176.6 at chr20:25452697-25585531
NM_001318226.1 at chr20:25452697-25585531

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011529198.1 at chr20:25452697-25479653
XM_017027735.1 at chr20:25452697-25490324
XM_011529195.3 at chr20:25452697-25490391
XM_011529194.2 at chr20:25452697-25494068
XM_017027734.1 at chr20:25452697-25498254
XM_011529197.2 at chr20:25452697-25498346
XM_011529192.2 at chr20:25452697-25500690
XM_011529191.1 at chr20:25452697-25509789
XM_011529190.1 at chr20:25452697-25526598
XM_011529193.1 at chr20:25452697-25526598
XM_011529186.2 at chr20:25452697-25540721
XM_011529187.2 at chr20:25452697-25540721
XM_011529189.1 at chr20:25452697-25540812
XM_017027732.1 at chr20:25452697-25542672
XM_017027733.1 at chr20:25452697-25585480
XM_011529188.1 at chr20:25452697-25585531

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

NINL at chr20:25452697-25585531

RefSeq Genes

NINL at chr20:25452697-25585531 - (NM_025176) ninein-like protein isoform 1
NINL at chr20:25452697-25585531 - (NM_001318226) ninein-like protein isoform 2

Non-Human RefSeq Genes

Ninl at chr20:25452696-25585545 - (NM_207204) ninein-like protein

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

NINL at chr20:25452697-25585531
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

NINL at chr20:25452697-25585531
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NINL at chr20:25452697-25585531
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

NINL at chr20:25452697-25585531
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

NINL at chr20:25452705-25585517
NINL at chr20:25452826-25585517
NINL at chr20:25452837-25458976
NINL at chr20:25455673-25462742
NINL at chr20:25462383-25479027
NINL at chr20:25481838-25491525
NINL at chr20:25488983-25496803

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ninl_24543 at chr20:25452701-25585517
Ninl_24544 at chr20:25452701-25585517
Ninl_24545 at chr20:25452701-25585517
Ninl_24546 at chr20:25452701-25585517
Ninl_75228 at chr20:25452701-25585517
Ninl_75229 at chr20:25452701-25585517

JU328949 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
  494   95.0%         20     +-  25462396  25476215  JU328949     1   494   496