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Gencode Genes

MAP1LC3B2 (ENST00000556529.4) at chr12:116559381-116576606 - Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA. (from RefSeq NM_001085481)
MAP1LC3B (ENST00000650688.1) at chr16:87383953-87404779 - Probably involved in formation of autophagosomal  vacuoles (autophagosomes). (from UniProt Q9GZQ8)
MAP1LC3B2 (ENST00000630062.1) at chr12:116548105-116550441 - microtubule associated protein 1 light chain 3 beta 2 (from HGNC MAP1LC3B2)
MAP1LC3B2 (ENST00000625301.1) at chr12:116550742-116560083 - microtubule associated protein 1 light chain 3 beta 2 (from HGNC MAP1LC3B2)
MAP1LC3B2 (ENST00000547114.3) at chr12:116548106-116554381 - microtubule associated protein 1 light chain 3 beta 2 (from HGNC MAP1LC3B2)
MAP1LC3B (ENST00000570189.5) at chr16:87392317-87403778 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BTE7)
MAP1LC3B (ENST00000565788.1) at chr16:87392334-87402609 - Belongs to the MAP1 LC3 family. (from UniProt H3BTL1)
MAP1LC3B (ENST00000564844.1) at chr16:87392344-87404779 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BM99)
MAP1LC3B (ENST00000564638.1) at chr16:87392423-87399504 - microtubule associated protein 1 light chain 3 beta (from HGNC MAP1LC3B)
MAP1LC3B (ENST00000268607.10) at chr16:87392336-87404774 - Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA. (from RefSeq NM_022818)
ATG2A (ENST00000421419.3) at chr11:64894572-64917211 -   O95166:GABARAP; NbExp=2; IntAct=EBI-2514077, EBI-712001;  Q9H0R8:GABARAPL1; NbExp=3; IntAct=EBI-2514077, EBI-746969;  P60520:GABARAPL2; NbExp=2; IntAct=EBI-2514077, EBI-720116;  Q9GZQ8:MAP1LC3B; NbExp=2; IntAct=EBI-2514077, EBI-373144; (from UniProt Q2TAZ0)
FYCO1 (ENST00000535325.5) at chr3:45917899-45995824 - May mediate microtubule plus end-directed vesicle  transport. (from UniProt Q9BQS8)
KBTBD6 (ENST00000379485.2) at chr13:41127569-41132802 - Homo sapiens kelch repeat and BTB domain containing 6 (KBTBD6), mRNA. (from RefSeq NM_152903)
STBD1 (ENST00000237642.6) at chr4:76306026-76311599 - Homo sapiens starch binding domain 1 (STBD1), mRNA. (from RefSeq NM_003943)
ATG2A (ENST00000377264.8) at chr11:64894546-64917209 - Homo sapiens autophagy related 2A (ATG2A), transcript variant 1, mRNA. (from RefSeq NM_015104)
TBC1D2B (ENST00000409931.7) at chr15:77994986-78077724 - Homo sapiens TBC1 domain family member 2B (TBC1D2B), transcript variant 2, mRNA. (from RefSeq NM_015079)
TBC1D2B (ENST00000300584.7) at chr15:77994985-78077652 - Homo sapiens TBC1 domain family member 2B (TBC1D2B), transcript variant 1, mRNA. (from RefSeq NM_144572)
TBC1D25 (ENST00000481090.6) at chrX:48539737-48559886 - Acts as a GTPase-activating protein specific for RAB33B.  Involved in the regulation of autophagosome maturation, the  process in which autophagosomes fuse with endosomes and lysosomes. (from UniProt Q3MII6)
HADHA (ENST00000646483.1) at chr2:26191250-26244596 - Bifunctional subunit. (from UniProt P40939)
ATG16L1 (ENST00000630204.2) at chr2_KN538363v1_fix:197010-241012 - Plays an essential role in autophagy (By similarity). (from UniProt Q676U5)
ATG16L1 (ENST00000373525.9) at chr2:233251672-233295674 - Plays an essential role in autophagy (By similarity). (from UniProt Q676U5)
SAFB2 (ENST00000591120.1) at chr19:5611876-5622776 - Binds to scaffold/matrix attachment region (S/MAR) DNA.  Can function as an estrogen receptor corepressor and can also  inhibit cell proliferation. (from UniProt Q14151)
CLINT1 (ENST00000530742.5) at chr5:157786287-157859133 - Binds to membranes enriched in phosphatidylinositol 4,5-  bisphosphate (PtdIns(4,5)P2). May have a role in transport via  clathrin-coated vesicles from the trans-Golgi network to  endosomes. Stimulates clathrin assembly. (from UniProt Q14677)
NIPSNAP2 (ENST00000446778.5) at chr7:55964581-56000181 - Homo sapiens nipsnap homolog 2 (NIPSNAP2), transcript variant 2, mRNA. (from RefSeq NM_001202469)
NIPSNAP2 (ENST00000322090.8) at chr7:55964585-56000179 - Homo sapiens nipsnap homolog 2 (NIPSNAP2), transcript variant 1, mRNA. (from RefSeq NM_001483)
UBA5 (ENST00000264991.8) at chr3:132654446-132678097 - Homo sapiens ubiquitin like modifier activating enzyme 5 (UBA5), transcript variant 2, mRNA. (from RefSeq NM_198329)
UBA5 (ENST00000356232.8) at chr3:132659466-132677944 - Homo sapiens ubiquitin like modifier activating enzyme 5 (UBA5), transcript variant 1, mRNA. (from RefSeq NM_024818)
TBC1D15 (ENST00000319106.12) at chr12:71839759-71923223 - Homo sapiens TBC1 domain family member 15 (TBC1D15), transcript variant 2, mRNA. (from RefSeq NM_001146214)
TBC1D15 (ENST00000550746.5) at chr12:71839718-71927248 - Homo sapiens TBC1 domain family member 15 (TBC1D15), transcript variant 1, mRNA. (from RefSeq NM_022771)
TBC1D15 (ENST00000485960.6) at chr12:71839759-71923645 - Homo sapiens TBC1 domain family member 15 (TBC1D15), transcript variant 3, mRNA. (from RefSeq NM_001146213)
FUNDC1 (ENST00000378045.5) at chrX:44523639-44542859 - Homo sapiens FUN14 domain containing 1 (FUNDC1), mRNA. (from RefSeq NM_173794)
ATG13 (ENST00000526508.5) at chr11:46617563-46674520 - Homo sapiens autophagy related 13 (ATG13), transcript variant 34, mRNA. (from RefSeq NM_001346338)
ATG13 (ENST00000530500.5) at chr11:46617563-46672660 - Homo sapiens autophagy related 13 (ATG13), transcript variant 51, mRNA. (from RefSeq NM_001346360)
ATG13 (ENST00000524625.5) at chr11:46617577-46674520 - Homo sapiens autophagy related 13 (ATG13), transcript variant 2, mRNA. (from RefSeq NM_014741)
ATG13 (ENST00000529655.5) at chr11:46617541-46673041 - Homo sapiens autophagy related 13 (ATG13), transcript variant 47, mRNA. (from RefSeq NM_001346356)
ATG16L1 (ENST00000626623.2) at chr2_KN538363v1_fix:196909-241011 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 3, mRNA. (from RefSeq NM_198890)
ATG16L1 (ENST00000630066.2) at chr2_KN538363v1_fix:197044-241012 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 2, mRNA. (from RefSeq NM_017974)
ATG16L1 (ENST00000625501.3) at chr2_KN538363v1_fix:197011-241007 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 1, mRNA. (from RefSeq NM_030803)
ATG16L1 (ENST00000347464.9) at chr2:233251571-233295673 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 3, mRNA. (from RefSeq NM_198890)
ATG16L1 (ENST00000392017.9) at chr2:233251673-233295669 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 1, mRNA. (from RefSeq NM_030803)
ATG16L1 (ENST00000392020.8) at chr2:233251706-233295674 - Homo sapiens autophagy related 16 like 1 (ATG16L1), transcript variant 2, mRNA. (from RefSeq NM_017974)
CLINT1 (ENST00000411809.6) at chr5:157786289-157859175 - Homo sapiens clathrin interactor 1 (CLINT1), transcript variant 2, mRNA. (from RefSeq NM_014666)
CLINT1 (ENST00000523908.5) at chr5:157787405-157859143 - Homo sapiens clathrin interactor 1 (CLINT1), transcript variant 1, mRNA. (from RefSeq NM_001195555)
CLINT1 (ENST00000523094.5) at chr5:157785743-157859145 - Homo sapiens clathrin interactor 1 (CLINT1), transcript variant 3, mRNA. (from RefSeq NM_001195556)
NBR1 (ENST00000589872.1) at chr17:43171243-43209857 - Homo sapiens NBR1 autophagy cargo receptor (NBR1), transcript variant 4, mRNA. (from RefSeq NM_001291571)
NBR1 (ENST00000341165.10) at chr17:43170481-43211689 - Homo sapiens NBR1 autophagy cargo receptor (NBR1), transcript variant 3, mRNA. (from RefSeq NM_031862)
TP53INP2 (ENST00000374809.6) at chr20:34704339-34713439 - Homo sapiens tumor protein p53 inducible nuclear protein 2 (TP53INP2), transcript variant 3, mRNA. (from RefSeq NM_001329430)
NBR1 (ENST00000590996.6) at chr17:43171214-43211688 - Homo sapiens NBR1 autophagy cargo receptor (NBR1), transcript variant 1, mRNA. (from RefSeq NM_005899)
ATG10 (ENST00000513443.5) at chr5:81972157-82147504 - E2-like enzyme involved in autophagy. Acts as an E2-like  enzyme that catalyzes the conjugation of ATG12 to ATG5. ATG12  conjugation to ATG5 is required for autophagy. Likely serves as an  ATG5-recognition molecule. Not involved in ATG12 conjugation to  ATG3 (By similarity). (from UniProt Q9H0Y0)
TP53INP2 (ENST00000374810.8) at chr20:34704344-34713436 - Homo sapiens tumor protein p53 inducible nuclear protein 2 (TP53INP2), transcript variant 1, mRNA. (from RefSeq NM_021202)
ATG10 (ENST00000355178.8) at chr5:81972025-82148117 - E2-like enzyme involved in autophagy. Acts as an E2-like  enzyme that catalyzes the conjugation of ATG12 to ATG5. ATG12  conjugation to ATG5 is required for autophagy. Likely serves as an  ATG5-recognition molecule. Not involved in ATG12 conjugation to  ATG3 (By similarity). (from UniProt Q9H0Y0)
KBTBD7 (ENST00000379483.4) at chr13:41189834-41194569 - Homo sapiens kelch repeat and BTB domain containing 7 (KBTBD7), mRNA. (from RefSeq NM_032138)
UBA5 (ENST00000494238.6) at chr3:132660362-132677782 - Homo sapiens ubiquitin like modifier activating enzyme 5 (UBA5), transcript variant 5, mRNA. (from RefSeq NM_001321239)
SAFB2 (ENST00000252542.9) at chr19:5586999-5622776 - Homo sapiens scaffold attachment factor B2 (SAFB2), mRNA. (from RefSeq NM_014649)
TBC1D25 (ENST00000376771.9) at chrX:48539714-48562609 - Homo sapiens TBC1 domain family member 25 (TBC1D25), transcript variant 14, non-coding RNA. (from RefSeq NR_145502)
ATG4B (ENST00000402096.5) at chr2:241637612-241672628 - Cysteine protease required for autophagy, which cleaves  the C-terminal part of MAP1LC3, GABARAPL1, GABARAPL2 and GABARAP,  allowing the liberation of form I. A subpopulation of form I is  subsequently converted to a smaller form (form II). Form II, with  a revealed C-terminal glycine, is considered to be the  phosphatidylethanolamine (PE)-conjugated form, and has the  capacity for the binding to autophagosomes. Also mediates the  lipid deconjugation required for target recycling. (from UniProt Q9Y4P1)
TP53INP1 (ENST00000448464.6) at chr8:94925972-94949366 - Homo sapiens tumor protein p53 inducible nuclear protein 1 (TP53INP1), transcript variant 2, mRNA. (from RefSeq NM_001135733)
TP53INP1 (ENST00000342697.5) at chr8:94925972-94949378 - Homo sapiens tumor protein p53 inducible nuclear protein 1 (TP53INP1), transcript variant 1, mRNA. (from RefSeq NM_033285)
ATG10 (ENST00000458350.7) at chr5:81972051-82254792 - Homo sapiens autophagy related 10 (ATG10), transcript variant 3, mRNA. (from RefSeq NM_001131028)
ATG10 (ENST00000282185.8) at chr5:81972023-82256133 - Homo sapiens autophagy related 10 (ATG10), transcript variant 2, mRNA. (from RefSeq NM_031482)
ATG7 (ENST00000446450.6) at chr3:11272416-11554988 - Homo sapiens autophagy related 7 (ATG7), transcript variant 3, mRNA. (from RefSeq NM_001144912)
ATG7 (ENST00000354449.7) at chr3:11272416-11557665 - Homo sapiens autophagy related 7 (ATG7), transcript variant 1, mRNA. (from RefSeq NM_006395)
ATG7 (ENST00000354956.9) at chr3:11272416-11555083 - Homo sapiens autophagy related 7 (ATG7), transcript variant 2, mRNA. (from RefSeq NM_001136031)
ATG13 (ENST00000528494.5) at chr11:46617600-46672726 - Homo sapiens autophagy related 13 (ATG13), transcript variant 53, non-coding RNA. (from RefSeq NR_144423)
ATG13 (ENST00000359513.8) at chr11:46617596-46674818 - Homo sapiens autophagy related 13 (ATG13), transcript variant 54, non-coding RNA. (from RefSeq NR_144424)
FYCO1 (ENST00000296137.7) at chr3:45917903-45995824 - Homo sapiens FYVE and coiled-coil domain containing 1 (FYCO1), mRNA. (from RefSeq NM_024513)
ATG5 (ENST00000343245.7) at chr6:106184476-106325417 - Homo sapiens autophagy related 5 (ATG5), transcript variant 2, mRNA. (from RefSeq NM_001286106)
ULK1 (ENST00000321867.6) at chr12:131894622-131923150 - Homo sapiens unc-51 like autophagy activating kinase 1 (ULK1), mRNA. (from RefSeq NM_003565)
ATG5 (ENST00000369076.8) at chr6:106184476-106325760 - Homo sapiens autophagy related 5 (ATG5), transcript variant 1, mRNA. (from RefSeq NM_004849)
ATG5 (ENST00000635758.2) at chr6:106184476-106325738 - Homo sapiens autophagy related 5 (ATG5), transcript variant 3, mRNA. (from RefSeq NM_001286107)
ATG3 (ENST00000402314.6) at chr3:112532510-112561916 - Homo sapiens autophagy related 3 (ATG3), transcript variant 2, mRNA. (from RefSeq NM_001278712)
ATG3 (ENST00000283290.10) at chr3:112532510-112561962 - Homo sapiens autophagy related 3 (ATG3), transcript variant 1, mRNA. (from RefSeq NM_022488)
ATG4B (ENST00000405546.7) at chr2:241637213-241673854 - Homo sapiens autophagy related 4B cysteine peptidase (ATG4B), transcript variant 2, mRNA. (from RefSeq NM_178326)
ATG4B (ENST00000404914.8) at chr2:241637693-241673857 - Homo sapiens autophagy related 4B cysteine peptidase (ATG4B), transcript variant 1, mRNA. (from RefSeq NM_013325)
HADHA (ENST00000380649.8) at chr2:26190635-26244632 - Homo sapiens hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha (HADHA), mRNA. (from RefSeq NM_000182)
RASSF5 (ENST00000580449.5) at chr1:206507546-206587712 - Homo sapiens Ras association domain family member 5 (RASSF5), transcript variant 2, mRNA. (from RefSeq NM_182664)
RASSF5 (ENST00000577571.5) at chr1:206557165-206589267 - Homo sapiens Ras association domain family member 5 (RASSF5), transcript variant 3, mRNA. (from RefSeq NM_182665)
RASSF5 (ENST00000579436.7) at chr1:206507531-206589448 - Homo sapiens Ras association domain family member 5 (RASSF5), transcript variant 1, mRNA. (from RefSeq NM_182663)
CABP1 (ENST00000316803.7) at chr12:120640552-120667311 - Homo sapiens calcium binding protein 1 (CABP1), transcript variant 3, mRNA. (from RefSeq NM_001033677)
CABP1 (ENST00000288616.7) at chr12:120650085-120667032 - Homo sapiens calcium binding protein 1 (CABP1), transcript variant 1, mRNA. (from RefSeq NM_031205)
CABP1 (ENST00000351200.6) at chr12:120650507-120667035 - Homo sapiens calcium binding protein 1 (CABP1), transcript variant 2, mRNA. (from RefSeq NM_004276)
NEK9 (ENST00000238616.10) at chr14:75079353-75127048 - Homo sapiens NIMA related kinase 9 (NEK9), transcript variant 2, mRNA. (from RefSeq NM_033116)
IPO5 (ENST00000357602.7) at chr13:97960249-98022489 - Functions in nuclear protein import as nuclear transport  receptor. Serves as receptor for nuclear localization signals  (NLS) in cargo substrates. Is thought to mediate docking of the  importin/substrate complex to the nuclear pore complex (NPC)  through binding to nucleoporin and the complex is subsequently  translocated through the pore by an energy requiring, Ran-  dependent mechanism. At the nucleoplasmic side of the NPC, Ran  binds to the importin, the importin/substrate complex dissociates  and importin is re-exported from the nucleus to the cytoplasm  where GTP hydrolysis releases Ran. The directionality of nuclear  import is thought to be conferred by an asymmetric distribution of  the GTP- and GDP-bound forms of Ran between the cytoplasm and  nucleus (By similarity). Mediates the nuclear import of ribosomal  proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import  receptor binding (BIB) domain of RPL23A. In vitro, mediates  nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1  infection, binds and mediates the nuclear import of HIV-1 Rev. (from UniProt O00410)
IPO5 (ENST00000490680.5) at chr13:97976632-98021882 - Functions in nuclear protein import as nuclear transport  receptor. Serves as receptor for nuclear localization signals  (NLS) in cargo substrates. Is thought to mediate docking of the  importin/substrate complex to the nuclear pore complex (NPC)  through binding to nucleoporin and the complex is subsequently  translocated through the pore by an energy requiring, Ran-  dependent mechanism. At the nucleoplasmic side of the NPC, Ran  binds to the importin, the importin/substrate complex dissociates  and importin is re-exported from the nucleus to the cytoplasm  where GTP hydrolysis releases Ran. The directionality of nuclear  import is thought to be conferred by an asymmetric distribution of  the GTP- and GDP-bound forms of Ran between the cytoplasm and  nucleus (By similarity). Mediates the nuclear import of ribosomal  proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import  receptor binding (BIB) domain of RPL23A. In vitro, mediates  nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1  infection, binds and mediates the nuclear import of HIV-1 Rev. (from UniProt O00410)
IPO5 (ENST00000261574.10) at chr13:97953675-98024295 - Functions in nuclear protein import as nuclear transport  receptor. Serves as receptor for nuclear localization signals  (NLS) in cargo substrates. Is thought to mediate docking of the  importin/substrate complex to the nuclear pore complex (NPC)  through binding to nucleoporin and the complex is subsequently  translocated through the pore by an energy requiring, Ran-  dependent mechanism. At the nucleoplasmic side of the NPC, Ran  binds to the importin, the importin/substrate complex dissociates  and importin is re-exported from the nucleus to the cytoplasm  where GTP hydrolysis releases Ran. The directionality of nuclear  import is thought to be conferred by an asymmetric distribution of  the GTP- and GDP-bound forms of Ran between the cytoplasm and  nucleus (By similarity). Mediates the nuclear import of ribosomal  proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import  receptor binding (BIB) domain of RPL23A. In vitro, mediates  nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1  infection, binds and mediates the nuclear import of HIV-1 Rev. (from UniProt O00410)
SQSTM1 (ENST00000360718.5) at chr5:179822485-179837255 - Homo sapiens sequestosome 1 (SQSTM1), transcript variant 3, mRNA. (from RefSeq NM_001142299)
SQSTM1 (ENST00000389805.9) at chr5:179820905-179838078 - Homo sapiens sequestosome 1 (SQSTM1), transcript variant 1, mRNA. (from RefSeq NM_003900)
RASSF1 (ENST00000616212.4) at chr3:50329786-50340936 - Homo sapiens Ras association domain family member 1 (RASSF1), transcript variant H, mRNA. (from RefSeq NM_001206957)
RASSF1 (ENST00000359365.8) at chr3:50329788-50340912 - Homo sapiens Ras association domain family member 1 (RASSF1), transcript variant A, mRNA. (from RefSeq NM_007182)
RASSF1 (ENST00000357043.6) at chr3:50329788-50340841 - Homo sapiens Ras association domain family member 1 (RASSF1), transcript variant D, mRNA. (from RefSeq NM_170714)
RASSF1 (ENST00000327761.7) at chr3:50329782-50337464 - Homo sapiens Ras association domain family member 1 (RASSF1), transcript variant C, mRNA. (from RefSeq NM_170713)
RASSF1 (ENST00000395126.7) at chr3:50329788-50338233 - Homo sapiens Ras association domain family member 1 (RASSF1), transcript variant B, mRNA. (from RefSeq NM_170712)
RASSF1 (ENST00000482447.1) at chr3:50329788-50340912 - Potential tumor suppressor. Required for death receptor-  dependent apoptosis. Mediates activation of STK3/MST2 and  STK4/MST1 during Fas-induced apoptosis by preventing their  dephosphorylation. When associated with MOAP1, promotes BAX  conformational change and translocation to mitochondrial membranes  in response to TNF and TNFSF10 stimulation. Isoform A interacts  with CDC20, an activator of the anaphase-promoting complex, APC,  resulting in the inhibition of APC activity and mitotic  progression. Inhibits proliferation by negatively regulating cell  cycle progression at the level of G1/S-phase transition by  regulating accumulation of cyclin D1 protein. Isoform C has been  shown not to perform these roles, no function has been identified  for this isoform. Isoform A disrupts interactions among MDM2, DAXX  and USP7, thus contributing to the efficient activation of TP53 by  promoting MDM2 self-ubiquitination in cell-cycle checkpoint  control in response to DNA damage. (from UniProt Q9NS23)
RASSF1 (ENST00000395117.6) at chr3:50329788-50340841 - Potential tumor suppressor. Required for death receptor-  dependent apoptosis. Mediates activation of STK3/MST2 and  STK4/MST1 during Fas-induced apoptosis by preventing their  dephosphorylation. When associated with MOAP1, promotes BAX  conformational change and translocation to mitochondrial membranes  in response to TNF and TNFSF10 stimulation. Isoform A interacts  with CDC20, an activator of the anaphase-promoting complex, APC,  resulting in the inhibition of APC activity and mitotic  progression. Inhibits proliferation by negatively regulating cell  cycle progression at the level of G1/S-phase transition by  regulating accumulation of cyclin D1 protein. Isoform C has been  shown not to perform these roles, no function has been identified  for this isoform. Isoform A disrupts interactions among MDM2, DAXX  and USP7, thus contributing to the efficient activation of TP53 by  promoting MDM2 self-ubiquitination in cell-cycle checkpoint  control in response to DNA damage. (from UniProt Q9NS23)
STK3 (ENST00000523601.5) at chr8:98454695-98942571 - Homo sapiens serine/threonine kinase 3 (STK3), transcript variant 2, mRNA. (from RefSeq NM_001256312)
STK3 (ENST00000419617.7) at chr8:98454633-98825688 - Homo sapiens serine/threonine kinase 3 (STK3), transcript variant 1, mRNA. (from RefSeq NM_006281)
IPO5 (ENST00000651721.2) at chr13:97953675-98024296 - Homo sapiens importin 5 (IPO5), mRNA. (from RefSeq NM_002271)
STK4 (ENST00000372801.5) at chr20:44966522-45075608 - Homo sapiens serine/threonine kinase 4 (STK4), transcript variant 2, mRNA. (from RefSeq NM_001352385)
STK4 (ENST00000372806.8) at chr20:44966512-45080021 - Homo sapiens serine/threonine kinase 4 (STK4), transcript variant 1, mRNA. (from RefSeq NM_006282)
SIRT1 (ENST00000212015.11) at chr10:67884656-67918390 - Homo sapiens sirtuin 1 (SIRT1), transcript variant 1, mRNA. (from RefSeq NM_012238)
MAP1LC3BP1 (ENST00000438342.1) at chr9:19461160-19464524 - microtubule associated protein 1 light chain 3 beta pseudogene 1 (from HGNC MAP1LC3BP1)
MAP1LC3BP1 (ENST00000417653.2) at chr9:19460926-19461304 - microtubule associated protein 1 light chain 3 beta pseudogene 1 (from HGNC MAP1LC3BP1)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_022818.4 at chr16:87392195-87404774
NM_001085481.2 at chr12:116559381-116576597

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

MAP1LC3B2 at chr12:116559381-116576606
MAP1LC3B at chr16:87392336-87404774

RefSeq Genes

MAP1LC3B at chr16:87392336-87404774 - (NM_022818) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B2 at chr12:116559381-116576593 - (NM_001085481) microtubule-associated proteins 1A/1B light chain 3 beta 2 precursor

Non-Human RefSeq Genes

MAP1LC3B at chr16:87392315-87404458 - (NM_001283869) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr16:87392426-87403079 - (NM_001245293) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr16:87391989-87403338 - (NM_001193625) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr12:116575929-116576562 - (NM_001193625) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr16:87392428-87403401 - (NM_001190290) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr12:116575943-116576521 - (NM_001190290) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr16:87392311-87404774 - (NM_001246576) microtubule-associated proteins 1A/1B light chain 3B
map1lc3b at chr20:34559347-34559892 - (NM_001305637) microtubule-associated proteins 1A/1B light chain 3B
Map1lc3b at chr9:19460645-19461315 - (NM_022867) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr9:19459425-19461303 - (NM_001001169) microtubule-associated proteins 1A/1B light chain 3B
MAP1LC3B at chr16:87392428-87404591 - (NM_001001169) microtubule-associated proteins 1A/1B light chain 3B

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

MAP1LC3B at chr16:87383953-87404779
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

MAP1LC3B at chr16:87383953-87404779
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392334-87402609

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

MAP1LC3B at chr16:87383995-87391740
MAP1LC3B at chr16:87384056-87391853
MAP1LC3B at chr16:87389761-87391738
MAP1LC3B at chr16:87389770-87391738
MAP1LC3B at chr16:87391800-87404779
MAP1LC3B at chr16:87392317-87403778
MAP1LC3B at chr16:87392334-87402609
MAP1LC3B at chr16:87392344-87404779
MAP1LC3B at chr16:87392423-87399504

Retroposed Genes V9, Including Pseudogenes

MAP1LC3B at chrX:27741310-27744628 - (NM_022818.4-20)
MAP1LC3B at chr7:7293521-7295966 - (AL834298.1-17)
MAP1LC3B at chr15_KI270905v1_alt:5051178-5051910 - (AK310224.1-8)
MAP1LC3B at chr12:116575851-116576616 - (AK310224.1-6)
MAP1LC3B at chr12:89027591-89028813 - (NM_022818.4-5)
MAP1LC3B at chr9:19459229-19461369 - (NM_022818.4-18)
MAP1LC3B at chr1:185330692-185333325 - (NM_022818.4-1)
MAP1LC3B at chr12:74663502-74664234 - (AK310224.1-3)
MAP1LC3B at chr12:114548826-114551865 - (AK290956.1-5)
MAP1LC3B at chr15:32836693-32837425 - (AK310224.1-7)
MAP1LC3B at chr6:5290590-5291411 - (JN663879.1-12)
MAP1LC3B at chr9:19459229-19461369 - (NM_022818.4-18)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Map1lc3b_38531 at chr16:87392195-87404774
Map1lc3b_52353 at chr16:87392195-87404774
Map1lc3b_VG17868 at chr16:87392195-87404774

Human Aligned mRNA Search Results

JN663879 - Homo sapiens MAP1LC3B-a (MAP1LC3B) mRNA, complete cds, alternatively spliced.
BC045759 - Homo sapiens microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:48651 IMAGE:4828857), complete cds.
BC018634 - Homo sapiens microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:14924 IMAGE:3623259), complete cds.
BC041874 - Homo sapiens microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:43743 IMAGE:5271912), complete cds.
BC067797 - Homo sapiens microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:87244 IMAGE:5276841), complete cds.
AK290956 - Homo sapiens cDNA FLJ77661 complete cds, highly similar to Homo sapiens microtubule-associated protein 1 light chain 3 beta(MAP1LC3B), mRNA.

Non-Human Aligned mRNA Search Results

MG132878 - Synthetic construct Xenopus tropicalis clone IMAGE:5379376 microtubule associated protein 1 light chain 3 beta (map1lc3b) gene, encodes complete protein.
BC058144 - Rattus norvegicus microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:72811 IMAGE:6889616), complete cds.
BC068180 - Mus musculus microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:92968 IMAGE:30634082), complete cds.
BC083556 - Rattus norvegicus microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:93422 IMAGE:7189855), complete cds.
BC110308 - Mus musculus microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:118046 IMAGE:5319360), complete cds.
HM046515 - Sus scrofa microtubule-associated protein 1 light chain 3 beta (MAP1LC3B) mRNA, complete cds.
BC102891 - Bos taurus microtubule-associated protein 1 light chain 3 beta, mRNA (cDNA clone MGC:128251 IMAGE:30956953), complete cds.
JV489140 - TSA: Macaca mulatta Mamu_9562 mRNA sequence.
LM645003 - Oryzias latipes mRNA for RNA-dependent DNA polymerase (MAP1LC3B gene).
EU441471 - Xenopus borealis clone Map1lc3b.b microtubule-associated protein 1 light chain 3 beta (map1lc3beta) mRNA, partial cds.
AB170381 - Macaca fascicularis brain cDNA clone: QmoA-10571, similar to human microtubule-associated protein 1 light chain 3 beta(MAP1LC3B), mRNA, RefSeq: NM_022818.2.
AB169714 - Macaca fascicularis brain cDNA, clone: QccE-21957, similar to human microtubule-associated protein 1 light chain 3 beta(MAP1LC3B), mRNA, RefSeq: NM_022818.2.