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Gencode Genes

LRRC42 (ENST00000371370.8) at chr1:53946350-53968168 - Homo sapiens leucine rich repeat containing 42 (LRRC42), transcript variant 1, mRNA. (from RefSeq NM_001256409)
LRRC42 (ENST00000477905.1) at chr1:53961953-53967733 - leucine rich repeat containing 42 (from HGNC LRRC42)
LRRC42 (ENST00000444987.1) at chr1:53946358-53960468 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt E7EP35)
LRRC42 (ENST00000371368.5) at chr1:53946085-53958252 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt A6NL66)
LRRC42 (ENST00000319223.8) at chr1:53946353-53968168 - Homo sapiens leucine rich repeat containing 42 (LRRC42), transcript variant 2, mRNA. (from RefSeq NM_052940)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_052940.5 at chr1:53946350-53968168
NM_001256409.2 at chr1:53946350-53968168

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_006710328.4 at chr1:53946438-53968168
XM_006710327.3 at chr1:53946643-53968168

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

LRRC42 at chr1:53946350-53968168

RefSeq Genes

LRRC42 at chr1:53946350-53968168 - (NM_052940) leucine-rich repeat-containing protein 42
LRRC42 at chr1:53946350-53968168 - (NM_001256409) leucine-rich repeat-containing protein 42

Non-Human RefSeq Genes

Lrrc42 at chr1:53946302-53968167 - (NM_029985) leucine-rich repeat-containing protein 42
Lrrc42 at chr1:53946431-53968167 - (NM_001025653) leucine-rich repeat-containing protein 42
LRRC42 at chr1:53946480-53968163 - (NM_001046386) leucine-rich repeat-containing protein 42

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

LRRC42 at chr1:53946350-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946350-53968168
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LRRC42 at chr1:53946350-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946350-53968168
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946353-53968168

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

LRRC42 at chr1:53946077-53968168
LRRC42 at chr1:53946085-53958252
LRRC42 at chr1:53946353-53968168
LRRC42 at chr1:53946358-53960468
LRRC42 at chr1:53961953-53967733

International Knockout Mouse Consortium Genes Mapped to Human Genome

Lrrc42_36418 at chr1:53946364-53968166
Lrrc42_VG18451 at chr1:53946364-53968166

BC013101 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1593  100.0%          1     +  53946487  53968168  BC013101     1  1593  1607

Non-Human Aligned mRNA Search Results

BC027203 - Mus musculus leucine rich repeat containing 42, mRNA (cDNA clone MGC:12118 IMAGE:3710091), complete cds.
BC031894 - Mus musculus leucine rich repeat containing 42, mRNA (cDNA clone MGC:38930 IMAGE:5362699), complete cds.
BC098685 - Rattus norvegicus leucine rich repeat containing 42, mRNA (cDNA clone MGC:112649 IMAGE:7385408), complete cds.
BC113249 - Bos taurus leucine rich repeat containing 42, mRNA (cDNA clone MGC:137941 IMAGE:8083609), complete cds.
JU321418 - TSA: Macaca mulatta Mamu_511903 mRNA sequence.
JU472444 - TSA: Macaca mulatta Mamu_376591 mRNA sequence.
JV043167 - TSA: Macaca mulatta Mamu_402946 mRNA sequence.