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Gencode Genes

LINS1 (ENST00000314742.13) at chr15:100566924-100602184 - Homo sapiens lines homolog 1 (LINS1), transcript variant 5, non-coding RNA. (from RefSeq NR_148018)
LINS1 (ENST00000561308.5) at chr15:100573415-100602171 -   Event=Alternative splicing; Named isoforms=3;  Name=1;    IsoId=Q8NG48-1; Sequence=Displayed;  Name=2;    IsoId=Q8NG48-2; Sequence=VSP_031142, VSP_031145;    Note=No experimental confirmation available;  Name=3;    IsoId=Q8NG48-3; Sequence=VSP_031143, VSP_031144;    Note=No experimental confirmation available; (from UniProt Q8NG48)
LINS1 (ENST00000561233.1) at chr15:100569898-100570631 - lines homolog 1 (from HGNC LINS1)
LINS1 (ENST00000561073.1) at chr15:100576575-100602150 - lines homolog 1 (from HGNC LINS1)
LINS1 (ENST00000560941.5) at chr15:100574233-100602174 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BNS6)
LINS1 (ENST00000560934.1) at chr15:100580320-100596936 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YMQ0)
LINS1 (ENST00000560783.1) at chr15:100559369-100573841 - lines homolog 1 (from HGNC LINS1)
LINS1 (ENST00000560272.1) at chr15:100580456-100602184 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YM78)
LINS1 (ENST00000560133.5) at chr15:100573477-100602174 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BNM9)
LINS1 (ENST00000559827.1) at chr15:100580899-100603230 - lines homolog 1 (from HGNC LINS1)
LINS1 (ENST00000559736.5) at chr15:100575022-100602184 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YKU3)
LINS1 (ENST00000559577.5) at chr15:100575044-100602157 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0YMK4)
LINS1 (ENST00000559169.1) at chr15:100569235-100573562 - lines homolog 1 (from HGNC LINS1)
LINS1 (ENST00000559149.5) at chr15:100572203-100602174 - Homo sapiens lines homolog 1 (LINS1), transcript variant 6, non-coding RNA. (from RefSeq NR_148019)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NR_148019.1 at chr15:100569223-100602240
NM_001352507.1 at chr15:100569223-100602240
NM_001040616.2 at chr15:100569223-100602240
NR_148017.1 at chr15:100569223-100602240
NR_148018.1 at chr15:100569223-100602240
NM_001352508.1 at chr15:100569223-100602240

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017022399.2 at chr15:100566914-100576673
XM_024449980.1 at chr15:100566914-100586601
XM_017022400.2 at chr15:100566914-100603032
XM_005254943.2 at chr15:100566914-100603032
XM_024449979.1 at chr15:100566914-100603032
XM_005254941.2 at chr15:100566934-100602184
XR_001751348.2 at chr15:100569722-100603032
XR_001751346.2 at chr15:100569898-100603032
XR_002957655.1 at chr15:100569991-100603032
XR_931862.3 at chr15:100570030-100603032
XR_001751347.2 at chr15:100570030-100603032

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

LINS1 at chr15:100566924-100602184

RefSeq Genes

LINS1 at chr15:100566924-100602184 - (NM_001040616) protein Lines homolog 1 isoform 1
LINS1 at chr15:100566924-100602184 - (NM_001352507) protein Lines homolog 1 isoform 2
LINS1 at chr15:100566924-100602184 - (NM_001352508) protein Lines homolog 1 isoform 3
LINS1 at chr15:100566924-100602184 - (NR_148018) 
LINS1 at chr15:100566924-100602184 - (NR_148017) 
LINS1 at chr15:100566924-100602184 - (NR_148019) 

Non-Human RefSeq Genes

Lins1 at chr15:100569280-100580878 - (NM_152815) protein Lines homolog 1 isoform 1
Lins1 at chr15:100569280-100580878 - (NM_001191001) protein Lines homolog 1 isoform 2
Lins1 at chr15:100569280-100580878 - (NR_034030) 
LINS1 at chr15:100569177-100580838 - (NM_001205649) protein Lines homolog 1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LINS1 at chr15:100566924-100602184
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566924-100602184
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LINS1 at chr15:100566914-100602240
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LINS1 at chr15:100559369-100573841
LINS1 at chr15:100566914-100602240
LINS1 at chr15:100569235-100573562
LINS1 at chr15:100569898-100570631
LINS1 at chr15:100572203-100602174
LINS1 at chr15:100573415-100602171
LINS1 at chr15:100573477-100602174
LINS1 at chr15:100574233-100602174
LINS1 at chr15:100575022-100602184
LINS1 at chr15:100575044-100602157
LINS1 at chr15:100576575-100602150
LINS1 at chr15:100580320-100596936
LINS1 at chr15:100580456-100602184
LINS1 at chr15:100580899-100603230

AK298946 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1196   99.9%         15     - 100573477 100602174  AK298946     3  1199  1199

Human Unaligned mRNA Search Results

NR_148018 - Homo sapiens lines homolog 1 (LINS1), transcript variant 5, non-coding RNA.
NR_148017 - Homo sapiens lines homolog 1 (LINS1), transcript variant 4, non-coding RNA.
NR_148019 - Homo sapiens lines homolog 1 (LINS1), transcript variant 6, non-coding RNA.

JU323393 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 2439   96.3%         15     +- 100569231 100602177  JU323393     3  2442  2444