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Gencode Genes

LHX9 (ENST00000367387.6) at chr1:197917372-197935478 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 1, mRNA. (from RefSeq NM_020204)
LHX9 (ENST00000615520.1) at chr1:197912130-197913180 - LIM homeobox 9 (from HGNC LHX9)
LHX9 (ENST00000606127.2) at chr1:197911902-197917991 - LIM homeobox 9 (from HGNC LHX9)
LHX9 (ENST00000561173.5) at chr1:197915837-197932266 - Nucleus (By similarity). (from UniProt H0YL54)
LHX9 (ENST00000475727.1) at chr1:197912488-197917959 - LIM homeobox 9 (from HGNC LHX9)
LHX9 (ENST00000367391.5) at chr1:197912491-197932591 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 3, mRNA. (from RefSeq NM_001370213)
LHX9 (ENST00000367390.7) at chr1:197912505-197935478 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 2, mRNA. (from RefSeq NM_001014434)
LHX9 (ENST00000367388.4) at chr1:197917355-197918766 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0Y330)
LDB2 (ENST00000441778.6) at chr4:16501541-16898594 - Homo sapiens LIM domain binding 2 (LDB2), transcript variant 2, mRNA. (from RefSeq NM_001130834)
LDB2 (ENST00000304523.10) at chr4:16501541-16898645 - Homo sapiens LIM domain binding 2 (LDB2), transcript variant 1, mRNA. (from RefSeq NM_001290)
LDB1 (ENST00000425280.1) at chr10:102107583-102120453 - Homo sapiens LIM domain binding 1 (LDB1), transcript variant 2, mRNA. (from RefSeq NM_001321612)
LDB1 (ENST00000361198.9) at chr10:102107560-102114946 - Homo sapiens LIM domain binding 1 (LDB1), transcript variant 3, mRNA. (from RefSeq NM_003893)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001014434.1 at chr1:197912505-197930143
NM_020204.2 at chr1:197917387-197930143

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011509781.2 at chr1:197915954-197931473
XM_005245350.3 at chr1:197915960-197935476
XM_017001849.1 at chr1:197917156-197931473

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

LHX9 at chr1:197917372-197935478

RefSeq Genes

LHX9 at chr1:197917372-197932587 - (NM_001370213) LIM/homeobox protein Lhx9 isoform 3
LHX9 at chr1:197917372-197935478 - (NM_020204) LIM/homeobox protein Lhx9 isoform 1
LHX9 at chr1:197912505-197930143 - (NM_001014434) LIM/homeobox protein Lhx9 isoform 2

Non-Human RefSeq Genes

lhx9.S at chr1:197917821-197932033 - (NM_001094058) LIM/homeobox protein Lhx9
LHX9 at chr1:197917426-197929264 - (NM_205426) LIM/homeobox protein Lhx9
lhx9 at chr1:197917821-197929262 - (NM_001037243) LIM/homeobox protein Lhx9 isoform 2
Lhx9 at chr1:197912502-197935477 - (NM_010714) LIM/homeobox protein Lhx9 isoform b
Lhx9 at chr1:197917372-197929595 - (NM_001042577) LIM/homeobox protein Lhx9 isoform c
Lhx9 at chr1:197917372-197935477 - (NM_001025565) LIM/homeobox protein Lhx9 isoform a
lhx9 at chr1:197917821-197931989 - (NM_001017710) LIM/homeobox protein Lhx9 isoform 1
LHX9 at chr1:197917879-197929584 - (NM_001024544) LIM/homeobox protein Lhx9
Lhx9 at chr1:197912529-197929264 - (NM_181367) LIM/homeobox protein Lhx9
lhx9 at chr1:197917881-197929259 - (NM_001291259) LIM/homeobox protein Lhx9
LHX9 at chr1:197917396-197933275 - (NM_001198727) LIM/homeobox protein Lhx9

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917372-197935478

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917372-197935478

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

LHX9 at chr1:197911902-197917991
LHX9 at chr1:197912130-197913180
LHX9 at chr1:197912488-197917959
LHX9 at chr1:197912491-197932591
LHX9 at chr1:197912505-197935478
LHX9 at chr1:197915837-197932266
LHX9 at chr1:197917355-197918766
LHX9 at chr1:197917399-197935476

International Knockout Mouse Consortium Genes Mapped to Human Genome

Lhx9_37515 at chr1:197912505-197930143
Lhx9_37516 at chr1:197912505-197930143
Lhx9_37517 at chr1:197912505-197930143
Lhx9_37518 at chr1:197912505-197930143

Human Aligned mRNA Search Results

AJ277914 - Homo sapiens partial LHX9 gene for LIM-homeobox 9, 3'UTR.
AJ277915 - Homo sapiens partial mRNA for LIM-homeobox 9 (LHX9 gene).
AJ296272 - Homo sapiens partial mRNA for lim-homeobox protein (LHX9 gene).
BC131622 - Homo sapiens LIM homeobox 9, mRNA (cDNA clone MGC:149693 IMAGE:40117467), complete cds.
AK097614 - Homo sapiens cDNA FLJ40295 fis, clone TESTI2028705, highly similar to LIM/HOMEOBOX PROTEIN LHX9.

Non-Human Aligned mRNA Search Results

BC080067 - Xenopus laevis LIM homeobox 9, mRNA (cDNA clone MGC:84078 IMAGE:6949018), complete cds.
BC163023 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194498 IMAGE:9037438), complete cds.
BC163060 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194712 IMAGE:9037177), complete cds.
BC163073 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194727 IMAGE:9037171), complete cds.
KT337464 - Andrias davidianus LIM/homeobox protein Lhx9 isoform a (lhx9) mRNA, complete cds, alternatively spliced.
AY534647 - Oryzias latipes lhx9 mRNA, partial cds.
AB188254 - Danio rerio lhx9 mRNA for LIM homeodomain type transcription factor Lhx9, complete cds.
JW866109 - TSA: Callorhinchus milii br.comp1927_c0_seq1 mRNA sequence.
FN597058 - Oreochromis mossambicus partial mRNA for LIM/homeobox protein Lhx9 (lhx9 gene).
KT337465 - Andrias davidianus LIM/homeobox protein Lhx9 (lhx9) mRNA, complete cds, alternatively spliced.
BT075435 - Osmerus mordax clone omor-rgc-510-067 LIM/homeobox protein Lhx9 putative mRNA, complete cds.
FJ438942 - Xenopus laevis LHX9 mRNA, complete cds.
BC128722 - Rattus norvegicus LIM homeobox 9, mRNA (cDNA clone MGC:156570 IMAGE:8362986), complete cds.
AJ311711 - Xenopus laevis partial mRNA for Lhx9 protein (Lhx9 gene).
AF134761 - Mus musculus LIM-homeodomain type transcription factor Lhx9 mRNA, partial cds.
AF527619 - Rattus norvegicus LIM-homeodomain type transcription factor Lhx9 mRNA, partial cds.
AY273890 - Rattus norvegicus LIM-homeodomain type transcription factor Lhx9 mRNA, complete cds.
BC126704 - Bos taurus LIM homeobox 9, mRNA (cDNA clone MGC:152059 IMAGE:8390667), complete cds.
AB269886 - Rana rugosa Lhx9 epsilon mRNA for LIM homeobox gene 9 epsilon protein, complete cds.
AB269885 - Rana rugosa Lhx9 delta mRNA for LIM homeobox gene 9 delta protein, complete cds.
AB269884 - Rana rugosa Lhx9 gamma mRNA for LIM homeobox gene 9 gamma protein, complete cds.
AB269883 - Rana rugosa Lhx9 beta mRNA for LIM homeobox gene 9 beta protein, complete cds.
AB269882 - Rana rugosa Lhx9 alpha mRNA for LIM homeobox gene 9 alpha protein, complete cds.
BT021834 - Bos taurus LIM homeobox 9 (LHX9), mRNA, complete cds.
BT026326 - Bos taurus LIM homeobox 9 (LHX9), mRNA, complete cds.
MG879528 - Crassostrea hongkongensis LIM homeobox 9 (Lhx9) mRNA, complete cds.
AF113518 - Mus musculus LIM homeobox protein 9 (Lhx9) mRNA, complete cds.
AJ243851 - Mus musculus mRNA for putative LIM-homeodomain protein alpha isoform.
BC072623 - Mus musculus LIM homeobox protein 9, mRNA (cDNA clone MGC:99887 IMAGE:6825043), complete cds.
AB542999 - Taeniopygia guttata Lhx9 mRNA for homepbox protein, partial cds.
MF001299 - Polyodon spathula LIM homeobox 9 (Lhx9) mRNA, partial cds.
MG576319 - UNVERIFIED: Alligator mississippiensis Lhx9 mRNA, partial sequence.
KT906494 - Maylandia zebra LIM homeobox 9 (lhx9) mRNA, partial cds.
BC093258 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:112196 IMAGE:7433430), complete cds.