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UCSC Genes

LHX9 (uc001guk.1) at chr1:197886517-197899273 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 1, mRNA.
LHX9 (uc021pgw.1) at chr1:197896721-197901715 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 2, mRNA.
LHX9 (uc009wzc.1) at chr1:197881635-197887127 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 2, mRNA.
LHX9 (uc001gui.1) at chr1:197881635-197899273 - Homo sapiens LIM homeobox 9 (LHX9), transcript variant 2, mRNA.
LDB1 (uc009xwz.3) at chr10:103867325-103880210 - Homo sapiens LIM domain binding 1 (LDB1), transcript variant 1, mRNA.
LDB1 (uc001kuk.4) at chr10:103867325-103874723 - Homo sapiens LIM domain binding 1 (LDB1), transcript variant 3, mRNA.
LDB2 (uc003goz.3) at chr4:16503165-16900424 - Homo sapiens LIM domain binding 2 (LDB2), transcript variant 1, mRNA.
LDB2 (uc011bxh.2) at chr4:16503165-16900424 - Homo sapiens LIM domain binding 2 (LDB2), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001014434.1 at chr1:197881635-197899273
NM_020204.2 at chr1:197886517-197899273

RefSeq Genes

LHX9 at chr1:197886502-197901717 - (NM_001370213) LIM/homeobox protein Lhx9 isoform 3
LHX9 at chr1:197886502-197904608 - (NM_020204) LIM/homeobox protein Lhx9 isoform 1
LHX9 at chr1:197881635-197899273 - (NM_001014434) LIM/homeobox protein Lhx9 isoform 2

Non-Human RefSeq Genes

lhx9.S at chr1:197886951-197901163 - (NM_001094058) LIM/homeobox protein Lhx9
LHX9 at chr1:197886571-197898394 - (NM_205426) LIM/homeobox protein Lhx9
lhx9 at chr1:197886951-197898413 - (NM_001037243) LIM/homeobox protein Lhx9 isoform 2
Lhx9 at chr1:197881632-197904608 - (NM_010714) LIM/homeobox protein Lhx9 isoform b
Lhx9 at chr1:197886502-197898725 - (NM_001042577) LIM/homeobox protein Lhx9 isoform c
Lhx9 at chr1:197886502-197904608 - (NM_001025565) LIM/homeobox protein Lhx9 isoform a
lhx9 at chr1:197886951-197901119 - (NM_001017710) LIM/homeobox protein Lhx9 isoform 1
LHX9 at chr1:197887009-197898714 - (NM_001024544) LIM/homeobox protein Lhx9
Lhx9 at chr1:197881659-197898394 - (NM_181367) LIM/homeobox protein Lhx9
lhx9 at chr1:197887011-197898389 - (NM_001291259) LIM/homeobox protein Lhx9
LHX9 at chr1:197886571-197902405 - (NM_001198727) LIM/homeobox protein Lhx9

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886502-197904608

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

LHX9 at chr1:197881032-197887121
LHX9 at chr1:197881260-197882310
LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886502-197904608

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

LHX9 at chr1:197881032-197887121
LHX9 at chr1:197881260-197882310
LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

LHX9 at chr1:197881032-197887121
LHX9 at chr1:197881260-197882310
LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

LHX9 at chr1:197881032-197887121
LHX9 at chr1:197881260-197882310
LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886485-197887896
LHX9 at chr1:197886529-197904606

Basic Gene Annotation Set from GENCODE Version 19

LHX9 at chr1:197881037-197887120
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Comprehensive Gene Annotation Set from GENCODE Version 19

LHX9 at chr1:197881037-197887120
LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886489-197887896
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886489-197887896
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197884967-197901396
LHX9 at chr1:197886489-197887896
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197899273

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197898394

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

LHX9 at chr1:197881618-197887089
LHX9 at chr1:197881621-197901721
LHX9 at chr1:197881635-197904608
LHX9 at chr1:197886489-197887896
LHX9 at chr1:197886504-197901998
LHX9 at chr1:197886529-197898394

International Knockout Mouse Consortium Genes Mapped to Human Genome

Lhx9_37515 at chr1:197881635-197899273
Lhx9_37516 at chr1:197881635-197899273
Lhx9_37517 at chr1:197881635-197899273
Lhx9_37518 at chr1:197881635-197899273

Human Aligned mRNA Search Results

AJ277914 - Homo sapiens partial LHX9 gene for LIM-homeobox 9, 3'UTR.
AJ277915 - Homo sapiens partial mRNA for LIM-homeobox 9 (LHX9 gene).
AJ296272 - Homo sapiens partial mRNA for lim-homeobox protein (LHX9 gene).
BC131622 - Homo sapiens LIM homeobox 9, mRNA (cDNA clone MGC:149693 IMAGE:40117467), complete cds.
AK097614 - Homo sapiens cDNA FLJ40295 fis, clone TESTI2028705, highly similar to LIM/HOMEOBOX PROTEIN LHX9.

Non-Human Aligned mRNA Search Results

BC080067 - Xenopus laevis LIM homeobox 9, mRNA (cDNA clone MGC:84078 IMAGE:6949018), complete cds.
BC163023 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194498 IMAGE:9037438), complete cds.
BC163060 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194712 IMAGE:9037177), complete cds.
BC163073 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:194727 IMAGE:9037171), complete cds.
KT337464 - Andrias davidianus LIM/homeobox protein Lhx9 isoform a (lhx9) mRNA, complete cds, alternatively spliced.
AY534647 - Oryzias latipes lhx9 mRNA, partial cds.
AB188254 - Danio rerio lhx9 mRNA for LIM homeodomain type transcription factor Lhx9, complete cds.
JW866109 - TSA: Callorhinchus milii br.comp1927_c0_seq1 mRNA sequence.
FN597058 - Oreochromis mossambicus partial mRNA for LIM/homeobox protein Lhx9 (lhx9 gene).
KT337465 - Andrias davidianus LIM/homeobox protein Lhx9 (lhx9) mRNA, complete cds, alternatively spliced.
BT075435 - Osmerus mordax clone omor-rgc-510-067 LIM/homeobox protein Lhx9 putative mRNA, complete cds.
FJ438942 - Xenopus laevis LHX9 mRNA, complete cds.
BC128722 - Rattus norvegicus LIM homeobox 9, mRNA (cDNA clone MGC:156570 IMAGE:8362986), complete cds.
AJ311711 - Xenopus laevis partial mRNA for Lhx9 protein (Lhx9 gene).
AF134761 - Mus musculus LIM-homeodomain type transcription factor Lhx9 mRNA, partial cds.
AF527619 - Rattus norvegicus LIM-homeodomain type transcription factor Lhx9 mRNA, partial cds.
AY273890 - Rattus norvegicus LIM-homeodomain type transcription factor Lhx9 mRNA, complete cds.
BC126704 - Bos taurus LIM homeobox 9, mRNA (cDNA clone MGC:152059 IMAGE:8390667), complete cds.
AB269886 - Rana rugosa Lhx9 epsilon mRNA for LIM homeobox gene 9 epsilon protein, complete cds.
AB269885 - Rana rugosa Lhx9 delta mRNA for LIM homeobox gene 9 delta protein, complete cds.
AB269884 - Rana rugosa Lhx9 gamma mRNA for LIM homeobox gene 9 gamma protein, complete cds.
AB269883 - Rana rugosa Lhx9 beta mRNA for LIM homeobox gene 9 beta protein, complete cds.
AB269882 - Rana rugosa Lhx9 alpha mRNA for LIM homeobox gene 9 alpha protein, complete cds.
BT021834 - Bos taurus LIM homeobox 9 (LHX9), mRNA, complete cds.
BT026326 - Bos taurus LIM homeobox 9 (LHX9), mRNA, complete cds.
MG879528 - Crassostrea hongkongensis LIM homeobox 9 (Lhx9) mRNA, complete cds.
AF113518 - Mus musculus LIM homeobox protein 9 (Lhx9) mRNA, complete cds.
AJ243851 - Mus musculus mRNA for putative LIM-homeodomain protein alpha isoform.
BC072623 - Mus musculus LIM homeobox protein 9, mRNA (cDNA clone MGC:99887 IMAGE:6825043), complete cds.
AB542999 - Taeniopygia guttata Lhx9 mRNA for homepbox protein, partial cds.
MF001299 - Polyodon spathula LIM homeobox 9 (Lhx9) mRNA, partial cds.
MG576319 - UNVERIFIED: Alligator mississippiensis Lhx9 mRNA, partial sequence.
KT906494 - Maylandia zebra LIM homeobox 9 (lhx9) mRNA, partial cds.
BC093258 - Danio rerio LIM homeobox 9, mRNA (cDNA clone MGC:112196 IMAGE:7433430), complete cds.

Ensembl Genes

LHX9 at chr1:197886504-197901998 - (ENST00000337020)
LHX9 at chr1:197884967-197901396 - (ENST00000561173)
LHX9 at chr1:197881621-197901721 - (ENST00000367391)
LHX9 at chr1:197881037-197887120 - (ENST00000606127)
LHX9 at chr1:197881618-197887089 - (ENST00000475727)
LHX9 at chr1:197881635-197904608 - (ENST00000367390)
LHX9 at chr1:197886489-197887896 - (ENST00000367388)
LHX9 at chr1:197886529-197899273 - (ENST00000367387)

Vega Protein-Coding Annotations

OTTHUMT00000098705 at chr1:197881618-197887089
OTTHUMT00000086546 at chr1:197881621-197901721
OTTHUMT00000086544 at chr1:197881635-197904608
OTTHUMT00000086548 at chr1:197886489-197887896
OTTHUMT00000086545 at chr1:197886504-197901998
OTTHUMT00000086547 at chr1:197886529-197898394