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UCSC Genes

IRF9 (uc001wmq.3) at chr14:24629729-24635774 - Homo sapiens interferon regulatory factor 9 (IRF9), mRNA.
IRF9 (uc010alj.3) at chr14:24632175-24635774 - Homo sapiens interferon regulatory factor 9 (IRF9), mRNA.
IFNAR2 (uc002yrd.3) at chr21:34602231-34636820 - Homo sapiens interferon (alpha, beta and omega) receptor 2 (IFNAR2), transcript variant 1, mRNA.
IFNAR2 (uc002yre.3) at chr21:34602231-34636820 - Homo sapiens interferon (alpha, beta and omega) receptor 2 (IFNAR2), transcript variant 1, mRNA.
STAT2 (uc001slc.3) at chr12:56735382-56754037 - Homo sapiens signal transducer and activator of transcription 2, 113kDa (STAT2), transcript variant 1, mRNA.
MAPK1 (uc002zvn.3) at chr22:22113947-22221970 - Homo sapiens mitogen-activated protein kinase 1 (MAPK1), transcript variant 1, mRNA.
MAPK1 (uc002zvo.3) at chr22:22123319-22221970 - Homo sapiens mitogen-activated protein kinase 1 (MAPK1), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_006084.4 at chr14:24630422-24635774

RefSeq Genes

IRF9 at chr14:24630474-24635774 - (NM_006084) interferon regulatory factor 9

Non-Human RefSeq Genes

IRF9 at chr14:24630502-24635715 - (NM_001283529) interferon regulatory factor 9
IRF9 at chr14:24631350-24635507 - (NM_001078670) interferon regulatory factor 9
IRF9 at chr14:24630425-24635715 - (NM_001260669) interferon regulatory factor 9
Irf9 at chr14:24631345-24635402 - (NM_001012041) interferon regulatory factor 9
IRF9 at chr14:24630808-24635420 - (NM_001024506) interferon regulatory factor 9
IRF9 at chr6:393229-401773 - (NM_204558) interferon regulatory factor 9
Irf9 at chr14:24630388-24635399 - (NM_001159417) interferon regulatory factor 9 isoform 1
Irf9 at chr14:24631350-24635399 - (NM_001159418) interferon regulatory factor 9 isoform 2
Irf9 at chr14:24630388-24635399 - (NM_008394) interferon regulatory factor 9 isoform 3

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from GENCODE Version 19

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from GENCODE Version 19

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24630482-24635601
IRF9 at chr14:24630486-24635111
IRF9 at chr14:24630499-24632490
IRF9 at chr14:24630499-24632795
IRF9 at chr14:24630499-24635463
IRF9 at chr14:24630502-24633312
IRF9 at chr14:24630510-24633948
IRF9 at chr14:24630513-24631925
IRF9 at chr14:24630526-24632974
IRF9 at chr14:24632205-24635433
IRF9 at chr14:24632821-24633496
IRF9 at chr14:24633084-24634129
IRF9 at chr14:24633739-24634658
IRF9 at chr14:24634968-24635774

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

IRF9 at chr14:24630262-24635774

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

IRF9 at chr14:24630262-24635774
IRF9 at chr14:24632205-24635433

International Knockout Mouse Consortium Genes Mapped to Human Genome

Irf9_74949 at chr14:24630422-24635774
Irf9_VG11692 at chr14:24630422-24635774

BC035716 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1549  100.0%         14     +  24631351  24635769  BC035716     1  1549  1593

Non-Human Aligned mRNA Search Results

MH410168 - Mylopharyngodon piceus IRF9 mRNA, complete cds.
BC005435 - Mus musculus interferon regulatory factor 9, mRNA (cDNA clone MGC:5974 IMAGE:3601255), complete cds.
BC102047 - Bos taurus interferon regulatory factor 9, mRNA (cDNA clone MGC:126912 IMAGE:7929058), complete cds.
AM920661 - Sparus aurata partial mRNA for interferon regulatory factor 9 (irf9 gene).
BC012968 - Mus musculus interferon regulatory factor 9, mRNA (cDNA clone MGC:13985 IMAGE:3257714), complete cds.
BC079454 - Rattus norvegicus interferon regulatory factor 9, mRNA (cDNA clone MGC:95006 IMAGE:7121327), complete cds.
JU332486 - TSA: Macaca mulatta Mamu_537198 mRNA sequence.
JU473958 - TSA: Macaca mulatta Mamu_389620 mRNA sequence.
HM355578 - Carassius auratus interferon regulatory factor 9 (IRF9) mRNA, partial cds.
JQ412058 - Tetraodon nigroviridis interferon regulatory factor 9 (IRF9) mRNA, complete cds.
KU193786 - Ctenopharyngodon idella interferon regulatory factor 9 (IRF9) mRNA, complete cds.
KY091659 - Miichthys miiuy interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021764 - Schizothorax lissolabiata isolate gcgyIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021765 - Gymnocypris waddellii isolate gyllIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021766 - Schizopygopsis stoliczkai isolate gyllkIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021767 - Gymnocypris eckloni isolate hbllIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021768 - Gymnodiptychus pachycheilus isolate hclccIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021769 - Schizopygopsis pylzovi isolate hhllkIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021770 - Platypharodon extremus isolate jbbycIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021771 - Oxygymnocypris stewartii isolate jllIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021772 - Schizothorax macropogon isolate jxgyIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021773 - Schizothorax lantsangensis isolate lclfyIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021774 - Schizopygopsis younghusbandi isolate lsllkIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021775 - Gymnocypris przewalskii isolate qhhllIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021776 - Ptychobarbus dipogon isolate sxyxyIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.
MG021777 - Schizothorax labiatus isolate xzgyIRF9 interferon regulatory factor 9 (IRF9) mRNA, complete cds.

Ensembl Genes

IRF9 at chr14:24633739-24634658 - (ENST00000560542)
IRF9 at chr14:24632821-24633496 - (ENST00000559863)
IRF9 at chr14:24630526-24632974 - (ENST00000560852)
IRF9 at chr14:24630510-24633948 - (ENST00000560275)
IRF9 at chr14:24630499-24632490 - (ENST00000561009)
IRF9 at chr14:24630499-24635463 - (ENST00000561415)
IRF9 at chr14:24630482-24635601 - (ENST00000557894)
IRF9 at chr14:24630262-24635774 - (ENST00000396864)
IRF9 at chr14:24630486-24635111 - (ENST00000561342)
IRF9 at chr14:24630499-24632795 - (ENST00000560365)
IRF9 at chr14:24630502-24633312 - (ENST00000559284)
IRF9 at chr14:24630513-24631925 - (ENST00000561412)
IRF9 at chr14:24632205-24635433 - (ENST00000324076)
IRF9 at chr14:24633084-24634129 - (ENST00000559229)
IRF9 at chr14:24634968-24635774 - (ENST00000560311)

Vega Protein-Coding Annotations

OTTHUMT00000071927 at chr14:24630262-24635774
OTTHUMT00000071926 at chr14:24632205-24635433