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Gencode Genes

IQCB1 (ENST00000310864.11) at chr3:121769761-121835060 - Homo sapiens IQ motif containing B1 (IQCB1), transcript variant 4, mRNA. (from RefSeq NM_001319107)
IQCB1 (ENST00000498104.1) at chr3:121797188-121835016 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9J6Z7)
IQCB1 (ENST00000471726.1) at chr3:121833936-121834992 - IQ motif containing B1 (from HGNC IQCB1)
IQCB1 (ENST00000462442.1) at chr3:121828470-121835061 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9JVC4)
IQCB1 (ENST00000460108.5) at chr3:121795461-121835033 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt C9JXD7)
IQCB1 (ENST00000393650.7) at chr3:121769994-121835079 - Homo sapiens IQ motif containing B1 (IQCB1), transcript variant 2, non-coding RNA. (from RefSeq NR_134968)
IQCB1 (ENST00000349820.10) at chr3:121769994-121835034 - Homo sapiens IQ motif containing B1 (IQCB1), transcript variant 3, mRNA. (from RefSeq NM_001023571)
NPHP4 (ENST00000622020.4) at chr1:5879505-5992473 - Involved in the organization of apical junctions in  kidney cells together with NPHP1 and RPGRIP1L/NPHP8 (By  similarity). Does not seem to be strictly required for  ciliogenesis (By similarity). (from UniProt O75161)
NPHP4 (ENST00000489180.6) at chr1:5862813-5992473 - Homo sapiens nephrocystin 4 (NPHP4), transcript variant 4, non-coding RNA. (from RefSeq NR_111987)
NPHP4 (ENST00000378156.9) at chr1:5862811-5992425 - Homo sapiens nephrocystin 4 (NPHP4), transcript variant 1, mRNA. (from RefSeq NM_015102)
CEP290 (ENST00000547691.7) at chr12:88049062-88089096 - Part of the tectonic-like complex which is required for  tissue-specific ciliogenesis and may regulate ciliary membrane  composition (By similarity). Activates ATF4-mediated  transcription. Required for the correct localization of ciliary  and phototransduction proteins in retinal photoreceptor cells; may  play a role in ciliary transport processes. (from UniProt O15078)
ATXN10 (ENST00000381061.8) at chr22:45671798-45845304 - Homo sapiens ataxin 10 (ATXN10), transcript variant 2, mRNA. (from RefSeq NM_001167621)
ATXN10 (ENST00000252934.10) at chr22:45671834-45845307 - Homo sapiens ataxin 10 (ATXN10), transcript variant 1, mRNA. (from RefSeq NM_013236)
RPGRIP1L (ENST00000647211.2) at chr16:53598153-53703859 - Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant 1, mRNA. (from RefSeq NM_015272)
RPGRIP1L (ENST00000262135.9) at chr16:53598153-53703889 - Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant 2, mRNA. (from RefSeq NM_001127897)
CEP290 (ENST00000552810.6) at chr12:88049016-88142088 - Homo sapiens centrosomal protein 290 (CEP290), mRNA. (from RefSeq NM_025114)
INVS (ENST00000374921.3) at chr9:100099288-100130903 - Required for normal renal development and establishment  of left-right axis. Probably acts as a molecular switch between  different Wnt signaling pathways. Inhibits the canonical Wnt  pathway by targeting cytoplasmic disheveled (DVL1) for degradation  by the ubiquitin-proteasome. This suggests that it is required in  renal development to oppose the repression of terminal  differentiation of tubular epithelial cells by Wnt signaling.  Involved in the organization of apical junctions in kidney cells  together with NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity).  Does not seem to be strictly required for ciliogenesis (By  similarity). (from UniProt Q9Y283)
INVS (ENST00000262456.6) at chr9:100099275-100300788 - Required for normal renal development and establishment  of left-right axis. Probably acts as a molecular switch between  different Wnt signaling pathways. Inhibits the canonical Wnt  pathway by targeting cytoplasmic disheveled (DVL1) for degradation  by the ubiquitin-proteasome. This suggests that it is required in  renal development to oppose the repression of terminal  differentiation of tubular epithelial cells by Wnt signaling.  Involved in the organization of apical junctions in kidney cells  together with NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity).  Does not seem to be strictly required for ciliogenesis (By  similarity). (from UniProt Q9Y283)
INVS (ENST00000262457.7) at chr9:100099243-100302175 - Homo sapiens inversin (INVS), transcript variant 6, non-coding RNA. (from RefSeq NR_134606)
NPHP1 (ENST00000316534.8) at chr2:110122311-110205042 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 1, mRNA. (from RefSeq NM_000272)
NPHP1 (ENST00000445609.6) at chr2:110123336-110204992 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 3, mRNA. (from RefSeq NM_001128178)
NPHP1 (ENST00000393272.7) at chr2:110123336-110205066 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 2, mRNA. (from RefSeq NM_207181)
NPHP1 (ENST00000355301.8) at chr2:110123708-110204972 - Homo sapiens nephrocystin 1 (NPHP1), transcript variant 4, mRNA. (from RefSeq NM_001128179)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001023570.3 at chr3:121769761-121835079
NM_001023571.3 at chr3:121769761-121835079
NM_001319107.1 at chr3:121769761-121835079
NR_134968.1 at chr3:121769761-121835079

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_024453833.1 at chr3:121769761-121834992
XM_005247911.4 at chr3:121769761-121834992
XR_001740376.2 at chr3:121769761-121834992
XR_001740377.2 at chr3:121769761-121834992
XR_001740378.2 at chr3:121769761-121834992
XR_001740380.2 at chr3:121769761-121834992
XR_001740379.2 at chr3:121769761-121834992
XR_001740381.2 at chr3:121769761-121834992
XM_017007539.2 at chr3:121769761-121834992
XM_017007537.2 at chr3:121769761-121834992
XM_024453834.1 at chr3:121769761-121834992
XM_005247912.3 at chr3:121769761-121834992
XM_011513335.3 at chr3:121769761-121834992

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

IQCB1 at chr3:121769761-121835060

RefSeq Genes

IQCB1 at chr3:121769761-121835079 - (NM_001023571) IQ calmodulin-binding motif-containing protein 1 isoform c
IQCB1 at chr3:121769761-121835079 - (NM_001319107) IQ calmodulin-binding motif-containing protein 1 isoform a
IQCB1 at chr3:121769761-121835060 - (NM_001023570) IQ calmodulin-binding motif-containing protein 1 isoform a
IQCB1 at chr3:121769761-121835079 - (NR_134968) 

NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

IQCB2P at chr6:28010551-28012902

Non-Human RefSeq Genes

Iqcb1 at chr3:121770263-121828960 - (NM_001107092) IQ calmodulin-binding motif-containing protein 1
IQCB1 at chr3:121770258-121828964 - (NM_001287550) IQ calmodulin-binding motif-containing protein 1
IQCB1 at chr3:121770004-121828965 - (NM_001046381) IQ calmodulin-binding motif-containing protein 1
Iqcb1 at chr3:121770261-121828960 - (NM_177128) IQ calmodulin-binding motif-containing protein 1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IQCB1 at chr3:121769761-121835060
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IQCB1 at chr3:121769761-121835060
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IQCB1 at chr3:121769763-121835079
IQCB1 at chr3:121769994-121835034
IQCB1 at chr3:121769994-121835079
IQCB1 at chr3:121795461-121835033
IQCB1 at chr3:121797188-121835016
IQCB1 at chr3:121828470-121835061
IQCB1 at chr3:121833936-121834992

Retroposed Genes V9, Including Pseudogenes

IQCB1 at chr6:28010551-28012929 - (NM_001023570.2-2)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Iqcb1_33475 at chr3:121769763-121835079
Iqcb1_33476 at chr3:121769763-121835079
Iqcb1_87078 at chr3:121769763-121835079

BC005806 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1896   99.9%          3     - 121770003 121835026  BC005806     1  1896  1915

Non-Human Aligned mRNA Search Results

BC029084 - Mus musculus IQ calmodulin-binding motif containing 1, mRNA (cDNA clone MGC:27790 IMAGE:3157011), complete cds.
MG135063 - Synthetic construct Xenopus tropicalis clone IMAGE:7686856 IQ motif containing B1 (iqcb1) gene, encodes complete protein.
BC114049 - Bos taurus IQ motif containing B1, mRNA (cDNA clone MGC:137218 IMAGE:8018479), complete cds.
JU324158 - TSA: Macaca mulatta Mamu_532536 mRNA sequence.
JU325837 - TSA: Macaca mulatta Mamu_538273 mRNA sequence.
JU477968 - TSA: Macaca mulatta Mamu_384891 mRNA sequence.

GeneReviews

IQCB1 at chr3:121769761-121835060