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Gencode Genes

IGF2BP1 (ENST00000290341.8) at chr17:48997385-49056145 - Homo sapiens insulin like growth factor 2 mRNA binding protein 1 (IGF2BP1), transcript variant 1, mRNA. (from RefSeq NM_006546)
IGF2BP1 (ENST00000515586.5) at chr17:48997763-49036933 - insulin like growth factor 2 mRNA binding protein 1 (from HGNC IGF2BP1)
IGF2BP1 (ENST00000510023.5) at chr17:48997486-49004858 - insulin like growth factor 2 mRNA binding protein 1 (from HGNC IGF2BP1)
IGF2BP1 (ENST00000505562.1) at chr17:49026392-49038438 - insulin like growth factor 2 mRNA binding protein 1 (from HGNC IGF2BP1)
IGF2BP1 (ENST00000499130.6) at chr17:49013917-49036833 - insulin like growth factor 2 mRNA binding protein 1 (from HGNC IGF2BP1)
IGF2BP1 (ENST00000431824.2) at chr17:48997746-49049444 - Homo sapiens insulin like growth factor 2 mRNA binding protein 1 (IGF2BP1), transcript variant 2, mRNA. (from RefSeq NM_001160423)
RPS3 (ENST00000524851.5) at chr11:75399543-75404994 - Identified in a mRNP granule complex, at least composed  of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD,  HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1,  NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8,  RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. Identified in  a HCV IRES-mediated translation complex, at least composed of  EIF3C, IGF2BP1, RPS3 and HCV RNA-replicon. (from UniProt P23396)
RPS9 (ENST00000391753.6) at chr19:54201133-54207647 - Identified in a mRNP granule complex, at least composed  of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD,  HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1,  NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8,  RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. (from UniProt P46781)
RPS9 (ENST00000615346.4) at chr19_GL949746v1_alt:175932-182446 - Identified in a mRNP granule complex, at least composed  of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD,  HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1,  NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8,  RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. (from UniProt P46781)
RPS9 (ENST00000611921.4) at chr19_GL949752v1_alt:176105-182618 - Identified in a mRNP granule complex, at least composed  of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD,  HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1,  NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8,  RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. (from UniProt P46781)
RPS9 (ENST00000619229.4) at chr19_KI270938v1_alt:176115-182629 - Identified in a mRNP granule complex, at least composed  of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD,  HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1,  NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8,  RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. (from UniProt P46781)
ELAVL2 (ENST00000380117.5) at chr9:23691811-23826337 - Binds RNA. Seems to recognize a GAAA motif. Can bind to  its own 3'-UTR, the FOS 3'-UTR and the ID 3'-UTR. (from UniProt Q12926)
RPLP0 (ENST00000551150.5) at chr12:120196699-120201099 - Ribosomal protein P0 is the functional equivalent of  E.coli protein L10. (from UniProt P05388)
RPLP0 (ENST00000313104.9) at chr12:120196702-120201107 - Ribosomal protein P0 is the functional equivalent of  E.coli protein L10. (from UniProt P05388)
ELAVL4 (ENST00000371823.8) at chr1:50108966-50201402 - Homo sapiens ELAV like RNA binding protein 4 (ELAVL4), transcript variant 1, mRNA. (from RefSeq NM_021952)
ELAVL4 (ENST00000448907.7) at chr1:50048014-50201570 - Homo sapiens ELAV like RNA binding protein 4 (ELAVL4), transcript variant 7, mRNA. (from RefSeq NM_001324208)
ELAVL4 (ENST00000371827.5) at chr1:50103910-50203770 - Homo sapiens ELAV like RNA binding protein 4 (ELAVL4), transcript variant 4, mRNA. (from RefSeq NM_001144776)
ELAVL4 (ENST00000371824.6) at chr1:50108920-50203786 - Homo sapiens ELAV like RNA binding protein 4 (ELAVL4), transcript variant 2, mRNA. (from RefSeq NM_001144774)
RO60 (ENST00000367446.7) at chr1:193060034-193085985 - Homo sapiens Ro60, Y RNA binding protein (RO60), transcript variant 2, mRNA. (from RefSeq NM_004600)
RO60 (ENST00000400968.6) at chr1:193059422-193084881 - Homo sapiens Ro60, Y RNA binding protein (RO60), transcript variant 5, mRNA. (from RefSeq NM_001173524)
RO60 (ENST00000367445.7) at chr1:193060057-193091777 - Homo sapiens Ro60, Y RNA binding protein (RO60), transcript variant 3, mRNA. (from RefSeq NM_001042370)
RO60 (ENST00000367444.7) at chr1:193060057-193091777 - Homo sapiens Ro60, Y RNA binding protein (RO60), transcript variant 1, mRNA. (from RefSeq NM_001042369)
RO60 (ENST00000367443.5) at chr1:193060057-193091777 - Homo sapiens Ro60, Y RNA binding protein (RO60), transcript variant 4, mRNA. (from RefSeq NM_001173525)
HNRNPA2B1 (ENST00000608362.2) at chr7:26173057-26201301 - Involved with pre-mRNA processing. Forms complexes  (ribonucleosomes) with at least 20 other different hnRNP and  heterogeneous nuclear RNA in the nucleus. (from UniProt P22626)
HNRNPA2B1 (ENST00000360787.8) at chr7:26190125-26200746 - Involved with pre-mRNA processing. Forms complexes  (ribonucleosomes) with at least 20 other different hnRNP and  heterogeneous nuclear RNA in the nucleus. (from UniProt P22626)
ERG (ENST00000398911.5) at chr21:38380027-38584945 - Transcriptional regulator. May participate in  transcriptional regulation through the recruitment of SETDB1  histone methyltransferase and subsequent modification of local  chromatin structure. (from UniProt P11308)
RO60 (ENST00000367441.1) at chr1:193069016-193084866 - RNA-binding protein that binds to several small  cytoplasmic RNA molecules known as Y RNAs. May stabilize these  RNAs from degradation. (from UniProt P10155)
HNRNPAB (ENST00000504898.5) at chr5:178204571-178211142 - Binds single-stranded RNA. Has a high affinity for G-  rich and U-rich regions of hnRNA. Also binds to APOB mRNA  transcripts around the RNA editing site. (from UniProt Q99729)
HNRNPAB (ENST00000506259.5) at chr5:178204548-178211149 - Binds single-stranded RNA. Has a high affinity for G-  rich and U-rich regions of hnRNA. Also binds to APOB mRNA  transcripts around the RNA editing site. (from UniProt Q99729)
CSDE1 (ENST00000610726.4) at chr1:114716914-114758050 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 4, mRNA. (from RefSeq NM_001242891)
CSDE1 (ENST00000534699.5) at chr1:114717957-114757982 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 5, mRNA. (from RefSeq NM_001242892)
CSDE1 (ENST00000369530.5) at chr1:114717312-114758003 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 3, mRNA. (from RefSeq NM_001130523)
CSDE1 (ENST00000339438.10) at chr1:114716913-114757983 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 2, mRNA. (from RefSeq NM_007158)
CSDE1 (ENST00000261443.9) at chr1:114717295-114757974 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 6, mRNA. (from RefSeq NM_001242893)
IGF2BP3 (ENST00000619562.4) at chr7:23311127-23347704 - RNA-binding protein that act as a regulator of mRNA  translation and stability. Binds to the 5'-UTR of the insulin-like  growth factor 2 (IGF2) mRNAs. Binds to sequences in the 3'-UTR of  CD44 mRNA. (from UniProt O00425)
CSDE1 (ENST00000358528.9) at chr1:114716916-114757984 - Homo sapiens cold shock domain containing E1 (CSDE1), transcript variant 1, mRNA. (from RefSeq NM_001007553)
HNRNPR (ENST00000374612.5) at chr1:23309786-23344322 - Component of ribonucleosomes, which are complexes of at  least 20 other different heterogenious nuclear ribonucleoproteins  (hnRNP). hnRNP play an important role in processing of precursor  mRNA in the nucleus. (from UniProt O43390)
HNRNPR (ENST00000634263.1) at chr1_KQ458383v1_alt:79765-114301 - Component of ribonucleosomes, which are complexes of at  least 20 other different heterogenious nuclear ribonucleoproteins  (hnRNP). hnRNP play an important role in processing of precursor  mRNA in the nucleus. (from UniProt O43390)
ELAVL2 (ENST00000544538.5) at chr9:23690107-23821848 - Homo sapiens ELAV like RNA binding protein 2 (ELAVL2), transcript variant 24, mRNA. (from RefSeq NM_001351475)
HNRNPA1 (ENST00000547276.5) at chr12:54280780-54285251 - Involved in the packaging of pre-mRNA into hnRNP  particles, transport of poly(A) mRNA from the nucleus to the  cytoplasm and may modulate splice site selection. May play a role  in HCV RNA replication. (from UniProt P09651)
ELAVL2 (ENST00000223951.10) at chr9:23690104-23821480 - Homo sapiens ELAV like RNA binding protein 2 (ELAVL2), transcript variant 27, mRNA. (from RefSeq NM_001351478)
ELAVL2 (ENST00000397312.7) at chr9:23690104-23826240 - Homo sapiens ELAV like RNA binding protein 2 (ELAVL2), transcript variant 1, mRNA. (from RefSeq NM_004432)
IGF2BP2 (ENST00000346192.7) at chr3:185643975-185825024 - Homo sapiens insulin like growth factor 2 mRNA binding protein 2 (IGF2BP2), transcript variant 8, non-coding RNA. (from RefSeq NR_138486)
PCBP2 (ENST00000552819.5) at chr12:53454734-53479824 - Single-stranded nucleic acid binding protein that binds  preferentially to oligo dC. Major cellular poly(rC)-binding  protein. Binds also poly(rU). Negatively regulates cellular  antiviral responses mediated by MAVS signaling. It acts as an  adapter between MAVS and the E3 ubiquitin ligase ITCH, therefore  triggering MAVS ubiquitinationa and degradation. (from UniProt Q15366)
PCBP2 (ENST00000548933.5) at chr12:53454785-53479620 - Single-stranded nucleic acid binding protein that binds  preferentially to oligo dC. Major cellular poly(rC)-binding  protein. Binds also poly(rU). Negatively regulates cellular  antiviral responses mediated by MAVS signaling. It acts as an  adapter between MAVS and the E3 ubiquitin ligase ITCH, therefore  triggering MAVS ubiquitinationa and degradation. (from UniProt Q15366)
PCBP2 (ENST00000455667.7) at chr12:53454737-53481162 - Single-stranded nucleic acid binding protein that binds  preferentially to oligo dC. Major cellular poly(rC)-binding  protein. Binds also poly(rU). Negatively regulates cellular  antiviral responses mediated by MAVS signaling. It acts as an  adapter between MAVS and the E3 ubiquitin ligase ITCH, therefore  triggering MAVS ubiquitinationa and degradation. (from UniProt Q15366)
CSDE1 (ENST00000438362.6) at chr1:114716916-114750190 - RNA-binding protein. Required for internal initiation of  translation of human rhinovirus RNA. May be involved in  translationally coupled mRNA turnover. Implicated with other RNA-  binding proteins in the cytoplasmic deadenylation/translational  and decay interplay of the FOS mRNA mediated by the major coding-  region determinant of instability (mCRD) domain. (from UniProt O75534)
ELAVL1 (ENST00000596459.5) at chr19:7963159-8002203 - Involved in 3'-UTR ARE-mediated MYC stabilization. Binds  avidly to the AU-rich element in FOS and IL3/interleukin-3 mRNAs.  In the case of the FOS AU-rich element, HUR binds to a core  element of 27 nucleotides that contain AUUUA, AUUUUA and AUUUUUA  motifs. Binds preferentially to the 5'-UUUU[AG]UUU-3' motif in  vitro. (from UniProt Q15717)
HNRNPR (ENST00000635150.1) at chr1_KQ458383v1_alt:74667-114315 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 7, mRNA. (from RefSeq NM_001297621)
HNRNPR (ENST00000427764.3) at chr1:23310454-23341008 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 5, mRNA. (from RefSeq NM_001297620)
HNRNPR (ENST00000634713.1) at chr1_KQ458383v1_alt:79762-114289 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 1, mRNA. (from RefSeq NM_001102398)
HNRNPR (ENST00000634634.1) at chr1_KQ458383v1_alt:80433-110987 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 5, mRNA. (from RefSeq NM_001297620)
HNRNPR (ENST00000634766.2) at chr1_KQ458383v1_alt:74667-114263 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 2, mRNA. (from RefSeq NM_005826)
HNRNPR (ENST00000478691.5) at chr1:23304688-23344336 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 7, mRNA. (from RefSeq NM_001297621)
HNRNPR (ENST00000374616.7) at chr1:23309783-23344310 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 1, mRNA. (from RefSeq NM_001102398)
HNRNPR (ENST00000302271.11) at chr1:23304688-23344284 - Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant 2, mRNA. (from RefSeq NM_005826)
ACTN4 (ENST00000634692.1) at chr19_KQ458386v1_fix:57374-139083 - F-actin cross-linking protein which is thought to anchor  actin to a variety of intracellular structures. This is a bundling  protein. Probably involved in vesicular trafficking via its  association with the CART complex. The CART complex is necessary  for efficient transferrin receptor recycling but not for EGFR  degradation. (from UniProt O43707)
HNRNPU (ENST00000444376.7) at chr1:244850297-244864560 - Homo sapiens heterogeneous nuclear ribonucleoprotein U (HNRNPU), transcript variant 2, mRNA. (from RefSeq NM_004501)
PRKRA (ENST00000325748.9) at chr2:178431414-178451175 - Homo sapiens protein activator of interferon induced protein kinase EIF2AK2 (PRKRA), transcript variant 1, mRNA. (from RefSeq NM_003690)
PRKRA (ENST00000487082.5) at chr2:178431966-178450764 - Homo sapiens protein activator of interferon induced protein kinase EIF2AK2 (PRKRA), transcript variant 3, mRNA. (from RefSeq NM_001139518)
PRKRA (ENST00000432031.6) at chr2:178431976-178450757 - Homo sapiens protein activator of interferon induced protein kinase EIF2AK2 (PRKRA), transcript variant 4, mRNA. (from RefSeq NM_001316362)
ACTN4 (ENST00000390009.7) at chr19:38647738-38729447 - F-actin cross-linking protein which is thought to anchor  actin to a variety of intracellular structures. This is a bundling  protein. Probably involved in vesicular trafficking via its  association with the CART complex. The CART complex is necessary  for efficient transferrin receptor recycling but not for EGFR  degradation. (from UniProt O43707)
HNRNPU (ENST00000640218.2) at chr1:244850297-244864543 - Homo sapiens heterogeneous nuclear ribonucleoprotein U (HNRNPU), transcript variant 1, mRNA. (from RefSeq NM_031844)
IGF2BP2 (ENST00000421047.3) at chr3:185645501-185821131 - Homo sapiens insulin like growth factor 2 mRNA binding protein 2 (IGF2BP2), transcript variant 7, mRNA. (from RefSeq NM_001291875)
STAU2 (ENST00000521451.5) at chr8:73550547-73746884 - RNA-binding protein required for the microtubule-  dependent transport of neuronal RNA from the cell body to the  dendrite. As protein synthesis occurs within the dendrite, the  localization of specific mRNAs to dendrites may be a prerequisite  for neurite outgrowth and plasticity at sites distant from the  cell body (By similarity). (from UniProt Q9NUL3)
RPS9 (ENST00000391752.5) at chr19:54200872-54207647 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 3, mRNA. (from RefSeq NM_001321702)
RPS9 (ENST00000620940.4) at chr19_GL949746v1_alt:175672-182446 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 3, mRNA. (from RefSeq NM_001321702)
RPS9 (ENST00000616536.4) at chr19_GL949752v1_alt:175844-182618 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 3, mRNA. (from RefSeq NM_001321702)
RPS9 (ENST00000610826.4) at chr19_KI270938v1_alt:175854-182629 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 3, mRNA. (from RefSeq NM_001321702)
STAU2 (ENST00000524104.5) at chr8:73652257-73746840 - RNA-binding protein required for the microtubule-  dependent transport of neuronal RNA from the cell body to the  dendrite. As protein synthesis occurs within the dendrite, the  localization of specific mRNAs to dendrites may be a prerequisite  for neurite outgrowth and plasticity at sites distant from the  cell body (By similarity). (from UniProt Q9NUL3)
IGF2BP2 (ENST00000382199.6) at chr3:185643739-185825056 - Homo sapiens insulin like growth factor 2 mRNA binding protein 2 (IGF2BP2), transcript variant 1, mRNA. (from RefSeq NM_006548)
PTBP2 (ENST00000609116.5) at chr1:96721783-96823738 - Homo sapiens polypyrimidine tract binding protein 2 (PTBP2), transcript variant 7, mRNA. (from RefSeq NM_001300990)
PTBP2 (ENST00000370197.5) at chr1:96721810-96814793 - Homo sapiens polypyrimidine tract binding protein 2 (PTBP2), transcript variant 3, mRNA. (from RefSeq NM_001300987)
PTBP2 (ENST00000426398.2) at chr1:96721822-96814793 - Homo sapiens polypyrimidine tract binding protein 2 (PTBP2), transcript variant 6, mRNA. (from RefSeq NM_021190)
PTBP2 (ENST00000370198.5) at chr1:96721810-96814793 - Homo sapiens polypyrimidine tract binding protein 2 (PTBP2), transcript variant 4, mRNA. (from RefSeq NM_001300988)
HNRNPA1 (ENST00000547566.5) at chr12:54280748-54287088 - Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant 3, non-coding RNA. (from RefSeq NR_135167)
HNRNPC (ENST00000556897.5) at chr14:21210966-21262677 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HNRNPC (ENST00000554969.5) at chr14:21210534-21269425 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HNRNPC (ENST00000430246.6) at chr14:21210556-21265516 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HNRNPA1 (ENST00000546500.5) at chr12:54280193-54287087 - Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant 1, mRNA. (from RefSeq NM_002136)
HNRNPA1 (ENST00000340913.10) at chr12:54280755-54285214 - Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant 2, mRNA. (from RefSeq NM_031157)
DHX9 (ENST00000367549.4) at chr1:182839347-182887982 - Homo sapiens DExH-box helicase 9 (DHX9), transcript variant 2, non-coding RNA. (from RefSeq NR_033302)
HNRNPA2B1 (ENST00000356674.7) at chr7:26191844-26200746 - Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), transcript variant A2, mRNA. (from RefSeq NM_002137)
HNRNPA2B1 (ENST00000354667.8) at chr7:26189927-26200746 - Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), transcript variant B1, mRNA. (from RefSeq NM_031243)
HNRNPC (ENST00000556628.5) at chr14:21210923-21269410 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HNRNPC (ENST00000555883.5) at chr14:21210933-21269400 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HNRNPC (ENST00000420743.6) at chr14:21211106-21269425 - Binds pre-mRNA and nucleates the assembly of 40S hnRNP  particles. Single HNRNPC tetramers bind 230-240 nucleotides.  Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role  in the early steps of spliceosome assembly and pre-mRNA splicing.  Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and  modulates the stability and the level of translation of bound mRNA  molecules. (from UniProt P07910)
HSPA8 (ENST00000453788.6) at chr11:123057489-123062335 - Homo sapiens heat shock protein family A (Hsp70) member 8 (HSPA8), transcript variant 2, mRNA. (from RefSeq NM_153201)
RPS9 (ENST00000616082.3) at chr19_GL949746v1_alt:175657-182444 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 8, non-coding RNA. (from RefSeq NR_135763)
RPS9 (ENST00000616877.3) at chr19_GL949752v1_alt:175830-182616 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 8, non-coding RNA. (from RefSeq NR_135763)
ILF3 (ENST00000588657.5) at chr19:10670606-10689312 - May facilitate double-stranded RNA-regulated gene  expression at the level of post-transcription. Can act as a  translation inhibitory protein which binds to coding sequences of  acid beta-glucosidase (GCase) and other mRNAs and functions at the  initiation phase of GCase mRNA translation, probably by inhibiting  its binding to polysomes. Can regulate protein arginine N-  methyltransferase 1 activity. May regulate transcription of the  IL2 gene during T-cell activation. Can promote the formation of  stable DNA-dependent protein kinase holoenzyme complexes on DNA. (from UniProt Q12906)
RPS9 (ENST00000302907.9) at chr19:54200858-54207647 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 8, non-coding RNA. (from RefSeq NR_135763)
ILF3 (ENST00000592763.5) at chr19:10670606-10685765 - May facilitate double-stranded RNA-regulated gene  expression at the level of post-transcription. Can act as a  translation inhibitory protein which binds to coding sequences of  acid beta-glucosidase (GCase) and other mRNAs and functions at the  initiation phase of GCase mRNA translation, probably by inhibiting  its binding to polysomes. Can regulate protein arginine N-  methyltransferase 1 activity. May regulate transcription of the  IL2 gene during T-cell activation. Can promote the formation of  stable DNA-dependent protein kinase holoenzyme complexes on DNA. (from UniProt Q12906)
HNRNPAB (ENST00000355836.9) at chr5:178204539-178211142 - Homo sapiens heterogeneous nuclear ribonucleoprotein A/B (HNRNPAB), transcript variant 2, mRNA. (from RefSeq NM_004499)
HNRNPAB (ENST00000358344.8) at chr5:178204533-178211163 - Homo sapiens heterogeneous nuclear ribonucleoprotein A/B (HNRNPAB), transcript variant 1, mRNA. (from RefSeq NM_031266)
RPS9 (ENST00000614737.4) at chr19_KI270938v1_alt:175724-182629 - Homo sapiens ribosomal protein S9 (RPS9), transcript variant 5, mRNA. (from RefSeq NM_001321705)
IGF2BP3 (ENST00000258729.8) at chr7:23310209-23470491 - Homo sapiens insulin like growth factor 2 mRNA binding protein 3 (IGF2BP3), mRNA. (from RefSeq NM_006547)
G3BP1 (ENST00000522367.5) at chr5:151771954-151795575 - May be a regulated effector of stress granule assembly.  Phosphorylation-dependent sequence-specific endoribonuclease in  vitro. Cleaves exclusively between cytosine and adenine and  cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-  dependent helicase. Unwinds preferentially partial DNA and RNA  duplexes having a 17 bp annealed portion and either a hanging 3'  tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA,  RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts  unidirectionally by moving in the 5' to 3' direction along the  bound single-stranded DNA. (from UniProt Q13283)
G3BP1 (ENST00000520177.5) at chr5:151771954-151805349 - May be a regulated effector of stress granule assembly.  Phosphorylation-dependent sequence-specific endoribonuclease in  vitro. Cleaves exclusively between cytosine and adenine and  cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-  dependent helicase. Unwinds preferentially partial DNA and RNA  duplexes having a 17 bp annealed portion and either a hanging 3'  tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA,  RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts  unidirectionally by moving in the 5' to 3' direction along the  bound single-stranded DNA. (from UniProt Q13283)
PABPC4 (ENST00000372857.7) at chr1:39560816-39576744 - Homo sapiens poly(A) binding protein cytoplasmic 4 (PABPC4), transcript variant 2, mRNA. (from RefSeq NM_003819)
PABPC4 (ENST00000372856.7) at chr1:39560816-39576751 - Homo sapiens poly(A) binding protein cytoplasmic 4 (PABPC4), transcript variant 3, mRNA. (from RefSeq NM_001135654)
HNRNPH1 (ENST00000442819.6) at chr5:179614179-179623721 - Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1), transcript variant 2, mRNA. (from RefSeq NM_005520)
HNRNPH1 (ENST00000356731.9) at chr5:179614179-179624669 - Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1), transcript variant 22, mRNA. (from RefSeq NM_001364243)
PABPC4 (ENST00000372858.8) at chr1:39560816-39576790 - Homo sapiens poly(A) binding protein cytoplasmic 4 (PABPC4), transcript variant 1, mRNA. (from RefSeq NM_001135653)
AGO1 (ENST00000373204.6) at chr1:35883209-35930532 - Homo sapiens argonaute RISC component 1 (AGO1), transcript variant 1, mRNA. (from RefSeq NM_012199)
NCL (ENST00000322723.9) at chr2:231453531-231464484 - Homo sapiens nucleolin (NCL), mRNA. (from RefSeq NM_005381)
RPLP0 (ENST00000228306.8) at chr12:120196707-120201211 - Homo sapiens ribosomal protein lateral stalk subunit P0 (RPLP0), transcript variant 2, mRNA. (from RefSeq NM_053275)
RPLP0 (ENST00000392514.9) at chr12:120196699-120201111 - Homo sapiens ribosomal protein lateral stalk subunit P0 (RPLP0), transcript variant 1, mRNA. (from RefSeq NM_001002)
FMR1 (ENST00000370470.5) at chrX:147912180-147948845 - Translation repressor. Component of the CYFIP1-EIF4E-  FMR1 complex which binds to the mRNA cap and mediates  translational repression. In the CYFIP1-EIF4E-FMR1 complex this  subunit mediates translation repression (By similarity). RNA-  binding protein that plays a role in intracellular RNA transport  and in the regulation of translation of target mRNAs. Associated  with polysomes. May play a role in the transport of mRNA from the  nucleus to the cytoplasm. Binds strongly to poly(G), binds  moderately to poly(U) but shows very little binding to poly(A) or  poly(C). (from UniProt Q06787)
STAU2 (ENST00000522695.5) at chr8:73420369-73738327 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 2, mRNA. (from RefSeq NM_001164381)
ERG (ENST00000417133.6) at chr21:38380027-38661694 - Homo sapiens ETS transcription factor ERG (ERG), transcript variant 7, mRNA. (from RefSeq NM_001243432)
STAU2 (ENST00000523558.5) at chr8:73421130-73746840 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 4, mRNA. (from RefSeq NM_001164383)
STAU2 (ENST00000521210.5) at chr8:73421212-73746840 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 3, mRNA. (from RefSeq NM_001164382)
STAU2 (ENST00000517542.5) at chr8:73551830-73746879 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 7, mRNA. (from RefSeq NM_001164385)
ERG (ENST00000442448.5) at chr21:38380030-38661780 - Homo sapiens ETS transcription factor ERG (ERG), transcript variant 2, mRNA. (from RefSeq NM_004449)
ERG (ENST00000398919.6) at chr21:38383291-38660667 - Homo sapiens ETS transcription factor ERG (ERG), transcript variant 5, mRNA. (from RefSeq NM_001243428)
ERG (ENST00000398897.5) at chr21:38380027-38584900 - Homo sapiens ETS transcription factor ERG (ERG), transcript variant 6, mRNA. (from RefSeq NM_001243429)
STAU2 (ENST00000522509.5) at chr8:73551643-73747708 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 6, mRNA. (from RefSeq NM_001164384)
STAU2 (ENST00000355780.9) at chr8:73549604-73746840 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 5, mRNA. (from RefSeq NM_014393)
ERG (ENST00000288319.12) at chr21:38380036-38498477 - Homo sapiens ETS transcription factor ERG (ERG), transcript variant 1, mRNA. (from RefSeq NM_182918)
STAU2 (ENST00000524300.6) at chr8:73420369-73746840 - Homo sapiens staufen double-stranded RNA binding protein 2 (STAU2), transcript variant 1, mRNA. (from RefSeq NM_001164380)
RPS3 (ENST00000527446.5) at chr11:75399531-75422280 - Homo sapiens ribosomal protein S3 (RPS3), transcript variant 2, mRNA. (from RefSeq NM_001256802)
RPS3 (ENST00000278572.10) at chr11:75399530-75405688 - Homo sapiens ribosomal protein S3 (RPS3), transcript variant 3, mRNA. (from RefSeq NM_001260506)
RPS3 (ENST00000531188.6) at chr11:75399518-75406907 - Homo sapiens ribosomal protein S3 (RPS3), transcript variant 1, mRNA. (from RefSeq NM_001005)
HNRNPL (ENST00000221419.9) at chr19:38836388-38850333 - Homo sapiens heterogeneous nuclear ribonucleoprotein L (HNRNPL), transcript variant 1, mRNA. (from RefSeq NM_001533)
HNRNPL (ENST00000634753.1) at chr19_KQ458386v1_fix:246060-260005 - Homo sapiens heterogeneous nuclear ribonucleoprotein L (HNRNPL), transcript variant 1, mRNA. (from RefSeq NM_001533)
HNRNPL (ENST00000600873.5) at chr19:38836635-38852338 - Homo sapiens heterogeneous nuclear ribonucleoprotein L (HNRNPL), transcript variant 2, mRNA. (from RefSeq NM_001005335)
HNRNPL (ENST00000634237.1) at chr19_KQ458386v1_fix:246307-262010 - Homo sapiens heterogeneous nuclear ribonucleoprotein L (HNRNPL), transcript variant 2, mRNA. (from RefSeq NM_001005335)
STAU1 (ENST00000371856.6) at chr20:49113339-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T3, mRNA. (from RefSeq NM_017453)
STAU1 (ENST00000371828.7) at chr20:49113341-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T6, mRNA. (from RefSeq NM_001319134)
STAU1 (ENST00000360426.8) at chr20:49113523-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T2, mRNA. (from RefSeq NM_017452)
STAU1 (ENST00000347458.9) at chr20:49113523-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T1, mRNA. (from RefSeq NM_017454)
STAU1 (ENST00000340954.11) at chr20:49113523-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T4, mRNA. (from RefSeq NM_004602)
ILF3 (ENST00000590261.5) at chr19:10670606-10689846 - Homo sapiens interleukin enhancer binding factor 3 (ILF3), transcript variant 1, mRNA. (from RefSeq NM_012218)
ILF3 (ENST00000250241.12) at chr19:10670537-10685765 - Homo sapiens interleukin enhancer binding factor 3 (ILF3), transcript variant 3, mRNA. (from RefSeq NM_153464)
ILF3 (ENST00000589998.5) at chr19:10654361-10684761 - Homo sapiens interleukin enhancer binding factor 3 (ILF3), transcript variant 2, mRNA. (from RefSeq NM_004516)
ILF3 (ENST00000407004.7) at chr19:10654328-10685765 - Homo sapiens interleukin enhancer binding factor 3 (ILF3), transcript variant 5, mRNA. (from RefSeq NM_001137673)
RPS3A (ENST00000274065.9) at chr4:151099628-151104642 - Homo sapiens ribosomal protein S3A (RPS3A), transcript variant 1, mRNA. (from RefSeq NM_001006)
ELAVL1 (ENST00000407627.7) at chr19:7958573-8005641 - Homo sapiens ELAV like RNA binding protein 1 (ELAVL1), mRNA. (from RefSeq NM_001419)
ILF3 (ENST00000449870.5) at chr19:10654261-10692417 - Homo sapiens interleukin enhancer binding factor 3 (ILF3), transcript variant 4, mRNA. (from RefSeq NM_017620)
ILF2 (ENST00000361891.9) at chr1:153661788-153670993 - Homo sapiens interleukin enhancer binding factor 2 (ILF2), transcript variant 1, mRNA. (from RefSeq NM_004515)
FMR1 (ENST00000370471.7) at chrX:147911951-147951112 - Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO4, non-coding RNA. (from RefSeq NR_033699)
FMR1 (ENST00000218200.12) at chrX:147911951-147951112 - Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO10, non-coding RNA. (from RefSeq NR_033700)
FMR1 (ENST00000370475.8) at chrX:147912052-147951125 - Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO1, mRNA. (from RefSeq NM_002024)
FMR1 (ENST00000440235.6) at chrX:147911951-147951125 - Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO9, mRNA. (from RefSeq NM_001185082)
HNRNPC (ENST00000557201.5) at chr14:21210937-21269425 - Homo sapiens heterogeneous nuclear ribonucleoprotein C (HNRNPC), transcript variant 3, mRNA. (from RefSeq NM_001077442)
HNRNPC (ENST00000554455.5) at chr14:21210550-21269425 - Homo sapiens heterogeneous nuclear ribonucleoprotein C (HNRNPC), transcript variant 1, mRNA. (from RefSeq NM_031314)
HNRNPC (ENST00000553300.5) at chr14:21210937-21269442 - Homo sapiens heterogeneous nuclear ribonucleoprotein C (HNRNPC), transcript variant 2, mRNA. (from RefSeq NM_004500)
EIF3C (ENST00000566501.5) at chr16:28688558-28735598 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 3, mRNA. (from RefSeq NM_001199142)
EIF3C (ENST00000564243.5) at chr16:28711474-28735596 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 5, mRNA. (from RefSeq NM_001286478)
EIF3C (ENST00000395587.5) at chr16:28711417-28735727 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 1, mRNA. (from RefSeq NM_003752)
PCBP2 (ENST00000439930.7) at chr12:53454779-53479618 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 4, mRNA. (from RefSeq NM_001128911)
PCBP2 (ENST00000546463.5) at chr12:53452325-53479683 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 2, mRNA. (from RefSeq NM_031989)
PCBP2 (ENST00000552296.6) at chr12:53452368-53479614 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 5, mRNA. (from RefSeq NM_001128912)
PCBP2 (ENST00000447282.5) at chr12:53452102-53481161 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 6, mRNA. (from RefSeq NM_001128913)
PCBP2 (ENST00000437231.5) at chr12:53452102-53481161 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 7, mRNA. (from RefSeq NM_001128914)
PCBP2 (ENST00000359462.9) at chr12:53452129-53479832 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 1, mRNA. (from RefSeq NM_005016)
PCBP2 (ENST00000359282.9) at chr12:53452102-53479826 - Homo sapiens poly(rC) binding protein 2 (PCBP2), transcript variant 3, mRNA. (from RefSeq NM_001098620)
RPS4X (ENST00000316084.10) at chrX:72272042-72277248 - Homo sapiens ribosomal protein S4 X-linked (RPS4X), mRNA. (from RefSeq NM_001007)
ACTN4 (ENST00000634960.2) at chr19_KQ458386v1_fix:57285-141225 - Homo sapiens actinin alpha 4 (ACTN4), transcript variant 1, mRNA. (from RefSeq NM_004924)
ACTN4 (ENST00000252699.7) at chr19:38647649-38731589 - Homo sapiens actinin alpha 4 (ACTN4), transcript variant 1, mRNA. (from RefSeq NM_004924)
PABPC1 (ENST00000318607.10) at chr8:100702916-100722088 - Homo sapiens poly(A) binding protein cytoplasmic 1 (PABPC1), mRNA. (from RefSeq NM_002568)
HNRNPH1 (ENST00000393432.8) at chr5:179614178-179623710 - Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1), transcript variant 28, mRNA. (from RefSeq NM_001364250)
HNRNPD (ENST00000353341.8) at chr4:82353829-82373986 - Homo sapiens heterogeneous nuclear ribonucleoprotein D (HNRNPD), transcript variant 3, mRNA. (from RefSeq NM_002138)
HNRNPD (ENST00000352301.8) at chr4:82353834-82373983 - Homo sapiens heterogeneous nuclear ribonucleoprotein D (HNRNPD), transcript variant 2, mRNA. (from RefSeq NM_031369)
HNRNPD (ENST00000313899.12) at chr4:82352498-82373991 - Homo sapiens heterogeneous nuclear ribonucleoprotein D (HNRNPD), transcript variant 1, mRNA. (from RefSeq NM_031370)
STAU1 (ENST00000371802.5) at chr20:49113523-49188367 - Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T8, mRNA. (from RefSeq NM_001322927)
YBX1 (ENST00000321358.12) at chr1:42682418-42703805 - Homo sapiens Y-box binding protein 1 (YBX1), transcript variant 1, mRNA. (from RefSeq NM_004559)
EIF3C (ENST00000331666.10) at chr16:28711363-28735730 - Component of the eukaryotic translation initiation  factor 3 (eIF-3) complex, which is required for several steps in  the initiation of protein synthesis. The eIF-3 complex associates  with the 40S ribosome and facilitates the recruitment of eIF-1,  eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S  preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA  recruitment to the 43S PIC and scanning of the mRNA for AUG  recognition. The eIF-3 complex is also required for disassembly  and recycling of post-termination ribosomal complexes and  subsequently prevents premature joining of the 40S and 60S  ribosomal subunits prior to initiation. (from UniProt Q99613)
EIF3C (ENST00000566866.5) at chr16:28711527-28735597 - Component of the eukaryotic translation initiation  factor 3 (eIF-3) complex, which is required for several steps in  the initiation of protein synthesis. The eIF-3 complex associates  with the 40S ribosome and facilitates the recruitment of eIF-1,  eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S  preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA  recruitment to the 43S PIC and scanning of the mRNA for AUG  recognition. The eIF-3 complex is also required for disassembly  and recycling of post-termination ribosomal complexes and  subsequently prevents premature joining of the 40S and 60S  ribosomal subunits prior to initiation. (from UniProt Q99613)
PABPN1 (ENST00000397276.6) at chr14:23321457-23326163 - Homo sapiens poly(A) binding protein nuclear 1 (PABPN1), transcript variant 2, mRNA. (from RefSeq NM_001360551)
SYNCRIP (ENST00000369622.8) at chr6:85613976-85642886 - Homo sapiens synaptotagmin binding cytoplasmic RNA interacting protein (SYNCRIP), transcript variant 1, mRNA. (from RefSeq NM_006372)
SYNCRIP (ENST00000355238.10) at chr6:85608329-85642991 - Homo sapiens synaptotagmin binding cytoplasmic RNA interacting protein (SYNCRIP), transcript variant 6, mRNA. (from RefSeq NM_001159677)
PABPN1 (ENST00000216727.8) at chr14:23321289-23326185 - Homo sapiens poly(A) binding protein nuclear 1 (PABPN1), transcript variant 1, mRNA. (from RefSeq NM_004643)
AGO2 (ENST00000519980.5) at chr8:140531421-140635546 - Homo sapiens argonaute RISC catalytic component 2 (AGO2), transcript variant 2, mRNA. (from RefSeq NM_001164623)
AGO2 (ENST00000220592.10) at chr8:140520156-140635633 - Homo sapiens argonaute RISC catalytic component 2 (AGO2), transcript variant 1, mRNA. (from RefSeq NM_012154)
NCBP1 (ENST00000375147.8) at chr9:97633821-97673748 - Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), transcript variant 1, mRNA. (from RefSeq NM_002486)
SRPK1 (ENST00000423325.6) at chr6:35833034-35921147 - Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 2, non-coding RNA. (from RefSeq NR_034069)
SRPK1 (ENST00000373825.7) at chr6:35832966-35921098 - Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 1, mRNA. (from RefSeq NM_003137)
DDX3X (ENST00000457138.7) at chrX:41333913-41350224 - Homo sapiens DEAD-box helicase 3 X-linked (DDX3X), transcript variant 3, mRNA. (from RefSeq NM_001193417)
DDX3X (ENST00000644876.1) at chrX:41333284-41351668 - Homo sapiens DEAD-box helicase 3 X-linked (DDX3X), transcript variant 1, mRNA. (from RefSeq NM_001356)
DDX3X (ENST00000478993.5) at chrX:41333398-41364472 - Homo sapiens DEAD-box helicase 3 X-linked (DDX3X), transcript variant 4, non-coding RNA. (from RefSeq NR_126093)
DDX3X (ENST00000630255.2) at chrX:41333348-41364472 - Multifunctional ATP-dependent RNA helicase. The ATPase  activity can be stimulated by various ribo- and deoxynucleic acids  indicative for a relaxed substrate specificity. In vitro can  unwind partially double stranded DNA with a preference for 5'-  single stranded DNA overhangs. Is involved in several steps of  gene expression, such as transcription, mRNA maturation, mRNA  export and translation. However, the exact mechanisms are not  known and some functions may be specific for a subset of mRNAs.  Involved in transcriptional regulation. Can enhance transcription  from the CDKN1A/WAF1 promoter in a SP1-dependent manner. Found  associated with the E-cadherin promoter and can down-regulate  transcription from the promoter. Involved in regulation of  translation initiation. Proposed to be involved in positive  regulation of translation such as of cyclin E1/CCNE1 mRNA and  specifically of mRNAs containing complex secondary structures in  their 5'UTRs; these functions seem to require RNA helicase  activity. Specifically promotes translation of a subset of viral  and cellular mRNAs carrying a 5'proximal stem-loop structure in  their 5'UTRs and cooperates with the eIF4F complex. Proposed to  act prior to 43S ribosomal scanning and to locally destabilize  these RNA structures to allow recognition of the mRNA cap or  loading onto the 40S subunit. After association with 40S ribosomal  subunits seems to be involved in the functional assembly of 80S  ribosomes; the function seems to cover translation of mRNAs with  structured and non-structured 5'UTRs and is independent of RNA  helicase activity. Also proposed to inhibit cap-dependent  translation by competetive interaction with EIF4E which can block  the EIF4E:EIF4G complex formation. Proposed to be involved in  stress response and stress granule assembly; the function is  independent of RNA helicase activity and seems to involve  association with EIF4E. May be involved in nuclear export of  specific mRNAs but not in bulk mRNA export via interactions with  XPO1 and NXF1. Also associates with polyadenylated mRNAs  independently of NXF1. Associates with spliced mRNAs in an exon  junction complex (EJC)-dependent manner and seems not to be  directly involved in splicing. May be involved in nuclear mRNA  export by association with DDX5 and regulating its nuclear  location. Involved in innate immune signaling promoting the  production of type I interferon (IFN-alpha and IFN-beta); proposed  to act as viral RNA sensor, signaling intermediate and  transcriptional coactivator. Involved in TBK1 and IKBKE-dependent  IRF3 activation leading to IFN-beta induction. Also found  associated with IFN-beta promoters; the function is independent of  IRF3. Can bind to viral RNAs and via association with MAVS/IPS1  and DDX58/RIG-I is thought to induce signaling in early stages of  infection. Involved in regulation of apoptosis. May be required  for activation of the intrinsic but inhibit activation of the  extrinsic apoptotic pathway. Acts as an antiapoptotic protein  through association with GSK3A/B and BIRC2 in an apoptosis  antagonizing signaling complex; activation of death receptors  promotes caspase-dependent cleavage of BIRC2 and DDX3X and  relieves the inhibition. May be involved in mitotic chromosome  segregation. Appears to be a prime target for viral manipulations.  Hepatitis B virus (HBV) polymerase and possibly vaccinia virus  (VACV) protein K7 inhibit IFN-beta induction probably by  dissociating DDX3X from TBK1 or IKBKE. Is involved in hepatitis C  virus (HCV) replication; the function may involve the association  with HCV core protein. HCV core protein inhibits the IPS1-  dependent function in viral RNA sensing and may switch the  function from a INF-beta inducing to a HCV replication mode.  Involved in HIV-1 replication. Acts as a cofactor for XPO1-  mediated nuclear export of incompletely spliced HIV-1 Rev RNAs. (from UniProt O00571)
DDX3X (ENST00000629785.2) at chrX:41333348-41364472 - Multifunctional ATP-dependent RNA helicase. The ATPase  activity can be stimulated by various ribo- and deoxynucleic acids  indicative for a relaxed substrate specificity. In vitro can  unwind partially double stranded DNA with a preference for 5'-  single stranded DNA overhangs. Is involved in several steps of  gene expression, such as transcription, mRNA maturation, mRNA  export and translation. However, the exact mechanisms are not  known and some functions may be specific for a subset of mRNAs.  Involved in transcriptional regulation. Can enhance transcription  from the CDKN1A/WAF1 promoter in a SP1-dependent manner. Found  associated with the E-cadherin promoter and can down-regulate  transcription from the promoter. Involved in regulation of  translation initiation. Proposed to be involved in positive  regulation of translation such as of cyclin E1/CCNE1 mRNA and  specifically of mRNAs containing complex secondary structures in  their 5'UTRs; these functions seem to require RNA helicase  activity. Specifically promotes translation of a subset of viral  and cellular mRNAs carrying a 5'proximal stem-loop structure in  their 5'UTRs and cooperates with the eIF4F complex. Proposed to  act prior to 43S ribosomal scanning and to locally destabilize  these RNA structures to allow recognition of the mRNA cap or  loading onto the 40S subunit. After association with 40S ribosomal  subunits seems to be involved in the functional assembly of 80S  ribosomes; the function seems to cover translation of mRNAs with  structured and non-structured 5'UTRs and is independent of RNA  helicase activity. Also proposed to inhibit cap-dependent  translation by competetive interaction with EIF4E which can block  the EIF4E:EIF4G complex formation. Proposed to be involved in  stress response and stress granule assembly; the function is  independent of RNA helicase activity and seems to involve  association with EIF4E. May be involved in nuclear export of  specific mRNAs but not in bulk mRNA export via interactions with  XPO1 and NXF1. Also associates with polyadenylated mRNAs  independently of NXF1. Associates with spliced mRNAs in an exon  junction complex (EJC)-dependent manner and seems not to be  directly involved in splicing. May be involved in nuclear mRNA  export by association with DDX5 and regulating its nuclear  location. Involved in innate immune signaling promoting the  production of type I interferon (IFN-alpha and IFN-beta); proposed  to act as viral RNA sensor, signaling intermediate and  transcriptional coactivator. Involved in TBK1 and IKBKE-dependent  IRF3 activation leading to IFN-beta induction. Also found  associated with IFN-beta promoters; the function is independent of  IRF3. Can bind to viral RNAs and via association with MAVS/IPS1  and DDX58/RIG-I is thought to induce signaling in early stages of  infection. Involved in regulation of apoptosis. May be required  for activation of the intrinsic but inhibit activation of the  extrinsic apoptotic pathway. Acts as an antiapoptotic protein  through association with GSK3A/B and BIRC2 in an apoptosis  antagonizing signaling complex; activation of death receptors  promotes caspase-dependent cleavage of BIRC2 and DDX3X and  relieves the inhibition. May be involved in mitotic chromosome  segregation. Appears to be a prime target for viral manipulations.  Hepatitis B virus (HBV) polymerase and possibly vaccinia virus  (VACV) protein K7 inhibit IFN-beta induction probably by  dissociating DDX3X from TBK1 or IKBKE. Is involved in hepatitis C  virus (HCV) replication; the function may involve the association  with HCV core protein. HCV core protein inhibits the IPS1-  dependent function in viral RNA sensing and may switch the  function from a INF-beta inducing to a HCV replication mode.  Involved in HIV-1 replication. Acts as a cofactor for XPO1-  mediated nuclear export of incompletely spliced HIV-1 Rev RNAs. (from UniProt O00571)
DDX3X (ENST00000629496.3) at chrX:41333348-41350287 - Multifunctional ATP-dependent RNA helicase. The ATPase  activity can be stimulated by various ribo- and deoxynucleic acids  indicative for a relaxed substrate specificity. In vitro can  unwind partially double stranded DNA with a preference for 5'-  single stranded DNA overhangs. Is involved in several steps of  gene expression, such as transcription, mRNA maturation, mRNA  export and translation. However, the exact mechanisms are not  known and some functions may be specific for a subset of mRNAs.  Involved in transcriptional regulation. Can enhance transcription  from the CDKN1A/WAF1 promoter in a SP1-dependent manner. Found  associated with the E-cadherin promoter and can down-regulate  transcription from the promoter. Involved in regulation of  translation initiation. Proposed to be involved in positive  regulation of translation such as of cyclin E1/CCNE1 mRNA and  specifically of mRNAs containing complex secondary structures in  their 5'UTRs; these functions seem to require RNA helicase  activity. Specifically promotes translation of a subset of viral  and cellular mRNAs carrying a 5'proximal stem-loop structure in  their 5'UTRs and cooperates with the eIF4F complex. Proposed to  act prior to 43S ribosomal scanning and to locally destabilize  these RNA structures to allow recognition of the mRNA cap or  loading onto the 40S subunit. After association with 40S ribosomal  subunits seems to be involved in the functional assembly of 80S  ribosomes; the function seems to cover translation of mRNAs with  structured and non-structured 5'UTRs and is independent of RNA  helicase activity. Also proposed to inhibit cap-dependent  translation by competetive interaction with EIF4E which can block  the EIF4E:EIF4G complex formation. Proposed to be involved in  stress response and stress granule assembly; the function is  independent of RNA helicase activity and seems to involve  association with EIF4E. May be involved in nuclear export of  specific mRNAs but not in bulk mRNA export via interactions with  XPO1 and NXF1. Also associates with polyadenylated mRNAs  independently of NXF1. Associates with spliced mRNAs in an exon  junction complex (EJC)-dependent manner and seems not to be  directly involved in splicing. May be involved in nuclear mRNA  export by association with DDX5 and regulating its nuclear  location. Involved in innate immune signaling promoting the  production of type I interferon (IFN-alpha and IFN-beta); proposed  to act as viral RNA sensor, signaling intermediate and  transcriptional coactivator. Involved in TBK1 and IKBKE-dependent  IRF3 activation leading to IFN-beta induction. Also found  associated with IFN-beta promoters; the function is independent of  IRF3. Can bind to viral RNAs and via association with MAVS/IPS1  and DDX58/RIG-I is thought to induce signaling in early stages of  infection. Involved in regulation of apoptosis. May be required  for activation of the intrinsic but inhibit activation of the  extrinsic apoptotic pathway. Acts as an antiapoptotic protein  through association with GSK3A/B and BIRC2 in an apoptosis  antagonizing signaling complex; activation of death receptors  promotes caspase-dependent cleavage of BIRC2 and DDX3X and  relieves the inhibition. May be involved in mitotic chromosome  segregation. Appears to be a prime target for viral manipulations.  Hepatitis B virus (HBV) polymerase and possibly vaccinia virus  (VACV) protein K7 inhibit IFN-beta induction probably by  dissociating DDX3X from TBK1 or IKBKE. Is involved in hepatitis C  virus (HCV) replication; the function may involve the association  with HCV core protein. HCV core protein inhibits the IPS1-  dependent function in viral RNA sensing and may switch the  function from a INF-beta inducing to a HCV replication mode.  Involved in HIV-1 replication. Acts as a cofactor for XPO1-  mediated nuclear export of incompletely spliced HIV-1 Rev RNAs. (from UniProt O00571)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001160423.1 at chr17:48997412-49056145
NM_006546.3 at chr17:48997412-49056145

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017024022.1 at chr17:48997461-49056145
XM_011524201.2 at chr17:48997461-49056145
XM_005256955.3 at chr17:49014664-49056145

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

IGF2BP1 at chr17:48997385-49056145

RefSeq Genes

IGF2BP1 at chr17:48997385-49056145 - (NM_001160423) insulin-like growth factor 2 mRNA-binding protein 1 isoform 2
IGF2BP1 at chr17:48997385-49056145 - (NM_006546) insulin-like growth factor 2 mRNA-binding protein 1 isoform 1

Non-Human RefSeq Genes

IGF2BP1 at chr17:48997384-49051428 - (NM_001193921) insulin-like growth factor 2 mRNA-binding protein 1
IGF2BP1 at chr17:48997746-49049783 - (NM_001192454) insulin-like growth factor 2 mRNA-binding protein 1
Igf2bp1 at chr17:48997439-49056139 - (NM_009951) insulin-like growth factor 2 mRNA-binding protein 1
IGF2BP1 at chr17:48996286-49049444 - (NM_205071) insulin-like growth factor 2 mRNA-binding protein 1
Igf2bp1 at chr17:48997525-49049541 - (NM_175594) insulin-like growth factor 2 mRNA-binding protein 1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IGF2BP1 at chr17:48997385-49056145
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IGF2BP1 at chr17:48997385-49056145
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997746-49049444

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IGF2BP1 at chr17:48997412-49055650
IGF2BP1 at chr17:48997486-49004858
IGF2BP1 at chr17:48997746-49049444
IGF2BP1 at chr17:48997763-49036933
IGF2BP1 at chr17:49013917-49036833
IGF2BP1 at chr17:49026392-49038438

International Knockout Mouse Consortium Genes Mapped to Human Genome

Igf2bp1_75901 at chr17:48997412-49056145
Igf2bp1_92344 at chr17:48997412-49056145

KR861348 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1690  100.0%         17     +  49014765  49049444  KR861348     1  1690  1690

Non-Human Aligned mRNA Search Results

BC165463 - Danio rerio insulin-like growth factor 2 mRNA binding protein 1, mRNA (cDNA clone MGC:192551 IMAGE:100061007), complete cds.
BC124196 - Danio rerio insulin-like growth factor 2 mRNA binding protein 1, mRNA (cDNA clone MGC:152963 IMAGE:5605200), complete cds.
BC051679 - Mus musculus insulin-like growth factor 2 mRNA binding protein 1, mRNA (cDNA clone MGC:60613 IMAGE:30008106), complete cds.
BC161831 - Rattus norvegicus insulin-like growth factor 2 mRNA binding protein 1, mRNA (cDNA clone MGC:187312 IMAGE:9023972), complete cds.
KR861347 - Mus musculus strain BALB/cJ insulin-like growth factor 2 mRNA binding protein 1 deltaN CRDBP (IGF2BP1) mRNA, complete cds, alternatively spliced.
KR861349 - Mus musculus strain BALB/cJ insulin-like growth factor 2 mRNA binding protein 1 dN CRDBP-2 (IGF2BP1) mRNA, complete cds, alternatively spliced.
DQ998837 - Danio rerio IGF2 mRNA-binding protein 1 (IGF2BP1) mRNA, complete cds.