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Gencode Genes

IFIT1 (ENST00000371804.4) at chr10:89392623-89406487 - Homo sapiens interferon induced protein with tetratricopeptide repeats 1 (IFIT1), transcript variant 1, mRNA. (from RefSeq NM_001548)
IFIT1 (ENST00000546318.2) at chr10:89392546-89406486 - Homo sapiens interferon induced protein with tetratricopeptide repeats 1 (IFIT1), transcript variant 5, mRNA. (from RefSeq NM_001270930)
RPL15 (ENST00000644185.1) at chr3:23917148-23919552 - Interacts with IFIT1 (via TPR repeats 1-4). (from UniProt P61313)
RPL15 (ENST00000611050.4) at chr3:23916804-23920856 - Interacts with IFIT1 (via TPR repeats 1-4). (from UniProt P61313)
RPL15 (ENST00000415719.5) at chr3:23917148-23919547 - Interacts with IFIT1 (via TPR repeats 1-4). (from UniProt P61313)
RPL15 (ENST00000354811.5) at chr3:23917705-23919551 - Interacts with IFIT1 (via TPR repeats 1-4). (from UniProt P61313)
IFIT2 (ENST00000371826.4) at chr10:89302046-89309271 - Homo sapiens interferon induced protein with tetratricopeptide repeats 2 (IFIT2), mRNA. (from RefSeq NM_001547)
RPL15 (ENST00000413699.7) at chr3:23917132-23920989 - Homo sapiens ribosomal protein L15 (RPL15), transcript variant 5, mRNA. (from RefSeq NM_001253383)
RPL15 (ENST00000307839.9) at chr3:23916545-23920977 - Homo sapiens ribosomal protein L15 (RPL15), transcript variant 1, mRNA. (from RefSeq NM_002948)
RPL15 (ENST00000456530.7) at chr3:23917139-23924374 - Homo sapiens ribosomal protein L15 (RPL15), transcript variant 6, mRNA. (from RefSeq NM_001253384)
IFIT2 (ENST00000638108.1) at chr10:89283694-89308900 - IFN-induced antiviral protein which inhibits expression  of viral messenger RNAs lacking 2'-O-methylation of the 5' cap.  The ribose 2'-O-methylation would provide a molecular signature to  distinguish between self and non-self mRNAs by the host during  viral infection. Viruses evolved several ways to evade this  restriction system such as encoding their own 2'-O-methylase for  their mRNAs or by stealing host cap containing the 2'-O-  methylation (cap snatching mechanism). Can promote apoptosis. (from UniProt P09913)
TMEM173 (ENST00000330794.9) at chr5:139475533-139482758 - Homo sapiens transmembrane protein 173 (TMEM173), transcript variant 1, mRNA. (from RefSeq NM_198282)
TMEM173 (ENST00000652271.1) at chr5:139475575-139482173 - Facilitator of innate immune signaling that promotes the  production of type I interferon (IFN-alpha and IFN-beta). Innate  immune response is triggered in response to non-CpG double-  stranded DNA from viruses and bacteria delivered to the cytoplasm.  Able to activate both NF-kappa-B and IRF3 transcription pathways  to induce expression of type I interferon and exert a potent anti-  viral state following expression. May be involved in translocon  function, the translocon possibly being able to influence the  induction of type I interferons. May be involved in transduction  of apoptotic signals via its association with the major  histocompatibility complex class II (MHC-II). Mediates death  signaling via activation of the extracellular signal-regulated  kinase (ERK) pathway. (from UniProt Q86WV6)
TMEM173 (ENST00000651699.1) at chr5:139475638-139482361 - Facilitator of innate immune signaling that promotes the  production of type I interferon (IFN-alpha and IFN-beta). Innate  immune response is triggered in response to non-CpG double-  stranded DNA from viruses and bacteria delivered to the cytoplasm.  Able to activate both NF-kappa-B and IRF3 transcription pathways  to induce expression of type I interferon and exert a potent anti-  viral state following expression. May be involved in translocon  function, the translocon possibly being able to influence the  induction of type I interferons. May be involved in transduction  of apoptotic signals via its association with the major  histocompatibility complex class II (MHC-II). Mediates death  signaling via activation of the extracellular signal-regulated  kinase (ERK) pathway. (from UniProt Q86WV6)
EIF3C (ENST00000566501.5) at chr16:28688558-28735598 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 3, mRNA. (from RefSeq NM_001199142)
EIF3C (ENST00000564243.5) at chr16:28711474-28735596 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 5, mRNA. (from RefSeq NM_001286478)
EIF3C (ENST00000395587.5) at chr16:28711417-28735727 - Homo sapiens eukaryotic translation initiation factor 3 subunit C (EIF3C), transcript variant 1, mRNA. (from RefSeq NM_003752)
EIF3E (ENST00000220849.10) at chr8:108201216-108248717 - Homo sapiens eukaryotic translation initiation factor 3 subunit E (EIF3E), mRNA. (from RefSeq NM_001568)
EIF3C (ENST00000331666.10) at chr16:28711363-28735730 - Component of the eukaryotic translation initiation  factor 3 (eIF-3) complex, which is required for several steps in  the initiation of protein synthesis. The eIF-3 complex associates  with the 40S ribosome and facilitates the recruitment of eIF-1,  eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S  preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA  recruitment to the 43S PIC and scanning of the mRNA for AUG  recognition. The eIF-3 complex is also required for disassembly  and recycling of post-termination ribosomal complexes and  subsequently prevents premature joining of the 40S and 60S  ribosomal subunits prior to initiation. (from UniProt Q99613)
EIF3C (ENST00000566866.5) at chr16:28711527-28735597 - Component of the eukaryotic translation initiation  factor 3 (eIF-3) complex, which is required for several steps in  the initiation of protein synthesis. The eIF-3 complex associates  with the 40S ribosome and facilitates the recruitment of eIF-1,  eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S  preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA  recruitment to the 43S PIC and scanning of the mRNA for AUG  recognition. The eIF-3 complex is also required for disassembly  and recycling of post-termination ribosomal complexes and  subsequently prevents premature joining of the 40S and 60S  ribosomal subunits prior to initiation. (from UniProt Q99613)
IFIT1B (ENST00000371809.3) at chr10:89378056-89385205 - Homo sapiens interferon induced protein with tetratricopeptide repeats 1B (IFIT1B), mRNA. (from RefSeq NM_001010987)
IFIT1P1 (ENST00000400497.2) at chr13:32384660-32386108 - interferon induced protein with tetratricopeptide repeats 1 pseudogene 1 (from HGNC IFIT1P1)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001548.4 at chr10:89392546-89406487
NM_001270929.1 at chr10:89392546-89406487
NM_001270928.1 at chr10:89392546-89406487
NM_001270927.1 at chr10:89392546-89406487
NM_001270930.1 at chr10:89392546-89406487
NM_001010987.2 at chr10:89378056-89385205

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

IFIT1 at chr10:89392623-89406487
IFIT1B at chr10:89378056-89385205

RefSeq Genes

IFIT1 at chr10:89392546-89406487 - (NM_001270930) interferon-induced protein with tetratricopeptide repeats 1 isoform 3
IFIT1 at chr10:89392623-89406487 - (NM_001270929) interferon-induced protein with tetratricopeptide repeats 1 isoform 3
IFIT1 at chr10:89392623-89406487 - (NM_001270928) interferon-induced protein with tetratricopeptide repeats 1 isoform 3
IFIT1 at chr10:89392623-89406487 - (NM_001270927) interferon-induced protein with tetratricopeptide repeats 1 isoform 2
IFIT1 at chr10:89392623-89406487 - (NM_001548) interferon-induced protein with tetratricopeptide repeats 1 isoform 1
IFIT1B at chr10:89378056-89385205 - (NM_001010987) interferon-induced protein with tetratricopeptide repeats 1B

NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

IFIT1P1 at chr13:32384602-32386641

Non-Human RefSeq Genes

IFIT1 at chr10:89392612-89403826 - (NM_001244363) interferon-induced protein with tetratricopeptide repeats 1
IFIT1 at chr10:89392647-89403985 - (NM_001133330) interferon-induced protein with tetratricopeptide repeats 1
IFIT1 at chr10:89392617-89403988 - (NM_001287726) interferon-induced protein with tetratricopeptide repeats 1
Ifit1 at chr10:89402300-89403502 - (NM_020096) interferon-induced protein with tetratricopeptide repeats 1-like protein
Ifit1 at chr10:89383353-89384738 - (NM_020096) interferon-induced protein with tetratricopeptide repeats 1-like protein
IFIT1 at chr10:89392546-89403989 - (NM_001205347) interferon-induced protein with tetratricopeptide repeats 1
Ifit1 at chr10:89402285-89403169 - (NM_008331) interferon-induced protein with tetratricopeptide repeats 1
Ifit1bl1 at chr10:89402309-89403673 - (NM_001110517) uncharacterized protein LOC667373 isoform 1
Ifit1bl1 at chr10:89383338-89384744 - (NM_001110517) uncharacterized protein LOC667373 isoform 1
Ifit1bl1 at chr10:89402309-89403673 - (NM_001101605) uncharacterized protein LOC667373 isoform 2
Ifit1bl1 at chr10:89383338-89384744 - (NM_001101605) uncharacterized protein LOC667373 isoform 2
Ifit1bl2 at chr10:89383317-89403673 - (NM_001362130) interferon induced protein with tetratricopeptide repeats 1B like 2
Ifit1bl2 at chr10:89383317-89403673 - (NM_053217) interferon induced protein with tetratricopeptide repeats 1B like 2

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IFIT1 at chr10:89392546-89406486
IFIT1 at chr10:89392623-89406487

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

IFIT1 at chr10:89392546-89406486
IFIT1 at chr10:89392623-89406487

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

IFIT1 at chr10:89392546-89403988
IFIT1 at chr10:89392546-89406486

Retroposed Genes V9, Including Pseudogenes

IFIT1_HUMAN at chr13:32384600-32386635 - (AK308688.1-8)
IFIT1 at chr13:32384600-32386635 - (AK308688.1-8)
IFIT1 at chr13:32384600-32386635 - (AK308688.1-8)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ifit1_42387 at chr10:89392565-89403988
Ifit1_77439 at chr10:89392565-89403988
Ifit1_VG10542 at chr10:89392565-89403988

Human Aligned mRNA Search Results

BC137368 - Homo sapiens interferon-induced protein with tetratricopeptide repeats 1-like, mRNA (cDNA clone MGC:168989 IMAGE:9021366), complete cds.
BC137369 - Homo sapiens interferon-induced protein with tetratricopeptide repeats 1-like, mRNA (cDNA clone MGC:168990 IMAGE:9021367), complete cds.
BC150189 - Homo sapiens interferon-induced protein with tetratricopeptide repeats 1-like, mRNA (cDNA clone MGC:164984 IMAGE:40148511), complete cds.
BC007091 - Homo sapiens interferon-induced protein with tetratricopeptide repeats 1, mRNA (cDNA clone MGC:14710 IMAGE:4250452), complete cds.
AK314588 - Homo sapiens cDNA, FLJ95422, highly similar to Homo sapiens interferon-induced protein with tetratricopeptiderepeats 1 (IFIT1), mRNA.

Non-Human Aligned mRNA Search Results

JU325264 - TSA: Macaca mulatta Mamu_523901 mRNA sequence.
BC003768 - Mus musculus interferon-induced protein with tetratricopeptide repeats 1, mRNA (cDNA clone MGC:5959 IMAGE:3496673), complete cds.
CT010226 - Mus musculus full open reading frame cDNA clone RZPDo836B0251D for gene Ifit1, Interferon-induced protein with tetratricopeptide repeats 1; complete cds, incl. stopcodon.
HQ679904 - Sus scrofa interferon-induced protein with tetratricopeptide repeats 1 (IFIT1) mRNA, complete cds.
JN621781 - Sus scrofa interferon-stimulated protein 56 (IFIT1) mRNA, complete cds.
AY890154 - Synthetic construct Homo sapiens clone FLH015329.01X interferon-induced protein with tetratricopeptide repeats 1 (IFIT1) mRNA, complete cds.
AY890155 - Synthetic construct Homo sapiens clone FLH015330.01X interferon-induced protein with tetratricopeptide repeats 1 (IFIT1) mRNA, complete cds.
AY892638 - Synthetic construct Homo sapiens clone FLH015328.01L interferon-induced protein with tetratricopeptide repeats 1 (IFIT1) mRNA, partial cds.
JU334336 - TSA: Macaca mulatta Mamu_520773 mRNA sequence.
JU334337 - TSA: Macaca mulatta Mamu_520774 mRNA sequence.
JV046955 - TSA: Macaca mulatta Mamu_419916 mRNA sequence.
AB174153 - Macaca fascicularis brain cDNA clone: QtrA-15035, similar to human interferon-induced protein with tetratricopeptiderepeats 1 (IFIT1), mRNA, RefSeq: NM_001548.1.
AB170169 - Macaca fascicularis brain cDNA clone: QbsB-10585, similar to human interferon-induced protein with tetratricopeptiderepeats 1 (IFIT1), mRNA, RefSeq: NM_001548.1.
AB169588 - Macaca fascicularis brain cDNA, clone: QnpA-13470, similar to human interferon-induced protein with tetratricopeptiderepeats 1 (IFIT1), mRNA, RefSeq: NM_001548.1.