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Gencode Genes

HLA-DRB4 (ENST00000411959.6) at chr6_GL000253v2_alt:3840439-3855387 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA. (from RefSeq NM_021983)
HLA-DRB4 (ENST00000411565.2) at chr6_GL000256v2_alt:3851133-3866096 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA. (from RefSeq NM_021983)
HLA-DRA (ENST00000383127.6) at chr6_GL000251v2_alt:3877968-3883135 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000416883.6) at chr6_GL000252v2_alt:3680147-3685357 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000442960.6) at chr6_GL000253v2_alt:3744059-3749270 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000414698.6) at chr6_GL000254v2_alt:3780808-3786018 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000383259.6) at chr6_GL000255v2_alt:3662891-3668101 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000411524.6) at chr6_GL000256v2_alt:3754985-3760195 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRA (ENST00000395388.7) at chr6:32439887-32445046 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA. (from RefSeq NM_019111)
HLA-DRB5 (ENST00000374975.4) at chr6:32517353-32530287 - Homo sapiens major histocompatibility complex, class II, DR beta 5 (HLA-DRB5), mRNA. (from RefSeq NM_002125)
HLA-DRB3 (ENST00000383126.7) at chr6_GL000251v2_alt:3934009-3947126 - Homo sapiens major histocompatibility complex, class II, DR beta 3 (HLA-DRB3), mRNA. (from RefSeq NM_022555)
HLA-DRB3 (ENST00000307137.11) at chr6_GL000255v2_alt:3715358-3728445 - Homo sapiens major histocompatibility complex, class II, DR beta 3 (HLA-DRB3), mRNA. (from RefSeq NM_022555)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_021983.4 at chr6_GL000253v2_alt:3840427-3855395
NM_021983.4 at chr6_GL000256v2_alt:3851133-3866104

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011548127.2 at chr6_GL000254v2_alt:3876736-3891523
XM_011548128.2 at chr6_GL000254v2_alt:3876736-3891524
XM_017030290.2 at chr6_GL000254v2_alt:3876736-3891737
XR_952975.2 at chr6_GL000254v2_alt:3876739-3891525
XM_011548129.2 at chr6_GL000254v2_alt:3876744-3891530
XM_024452550.1 at chr6_GL000254v2_alt:3876744-3891737
XM_017030291.1 at chr6_GL000254v2_alt:3878973-3891530

RefSeq Genes

HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891707 - (NM_021983) major histocompatibility complex, class II, DR beta 4 precursor
HLA-DRB4 at chr6_GL000256v2_alt:3851136-3866104 - (NM_021983) major histocompatibility complex, class II, DR beta 4 precursor

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

HLA-DRB4 at chr6_GL000253v2_alt:3840439-3855387
HLA-DRB4 at chr6_GL000253v2_alt:3840469-4004485
HLA-DRB4 at chr6_GL000253v2_alt:3840691-4004513
HLA-DRB4 at chr6_GL000254v2_alt:3876736-3891699
HLA-DRB4 at chr6_GL000254v2_alt:3877011-3963125
HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

HLA-DRB4 at chr6_GL000256v2_alt:3851133-3866096

Human Aligned mRNA Search Results

AF361548 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*0103101 allele, complete cds.
AF361549 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01033 allele, complete cds.
BC005312 - Homo sapiens major histocompatibility complex, class II, DR beta 4, mRNA (cDNA clone MGC:12387 IMAGE:3933019), complete cds.
DQ284431 - Homo sapiens clone ps1-17-T7 MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01030101 allele, complete cds.
DQ284433 - Homo sapiens clone ps1-6-T7 MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01030101 variant allele, complete cds.
GQ891550 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*0909 allele, complete cds.
M13278 - Human MHC HLA-DR4 first domain coding region of DR-beta chain mRNA (Dw4).
M13279 - Human MHC HLA-DR4 DQ-beta chain first variable domain mRNA, clone KT3c21.
M16731 - Human MHC class II HLA-DR4 I first domain coding region fo DR-beta chain mRNA (Dw4).
M16732 - Human MHC class II HLA-DR4/w53 first domain coding region fo DR-beta chain mRNA (Dw4).
M17381 - Human MHC class II HLA-DR-beta mRNA (DR4), partial cds.
U70543 - Homo sapiens MHC class II antigen (HLA-DRB4) pseudogene mRNA, null allele HLA-DRB4*0201N, partial cds.
U70544 - Homo sapiens HLA class II DRB4 null antigen (HLA-DRB4) pseudogene mRNA, null allele HLA-DRB4*0201N, partial cds.
AK292151 - Homo sapiens cDNA FLJ76360 complete cds, highly similar to Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
AF048707 - Homo sapiens MHC class II antigen HLA-DR mRNA (HLA-DRB4*01 variant allele), partial cds.

BT025473 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
  881   86.9%  6_GL000256v2_alt     +-   3979410   3993815  BT025473     6   895  1195