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UCSC Genes

HLA-DRB4 (uc011hel.2) at chr6_mann_hap4:3846266-3860953 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRB4 (uc011hzq.2) at chr6_mcf_hap5:3882324-3897292 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRB4 (uc011jsg.2) at chr6_ssto_hap7:3850434-3865402 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRA (uc003obh.3) at chr6:32407619-32412826 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011fnf.2) at chr6_cox_hap2:3878074-3883242 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011gju.2) at chr6_dbb_hap3:3685732-3690942 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011hek.2) at chr6_mann_hap4:3749679-3754894 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011hzp.2) at chr6_mcf_hap5:3786393-3791603 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011iwy.2) at chr6_qbl_hap6:3668487-3673697 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011jsf.2) at chr6_ssto_hap7:3754283-3759493 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRB5 (uc003obj.3) at chr6:32485154-32498006 - Homo sapiens major histocompatibility complex, class II, DR beta 5 (HLA-DRB5), mRNA.
HLA-DRB5 (uc003obk.4) at chr6:32485154-32557613 - Homo sapiens major histocompatibility complex, class II, DR beta 5 (HLA-DRB5), mRNA.
HLA-DRB3 (uc011fni.1) at chr6_cox_hap2:3934127-3947195 - Homo sapiens major histocompatibility complex, class II, DR beta 3 (HLA-DRB3), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_021983.4 at chr6_mann_hap4:3846047-3861015
NM_021983.4 at chr6_mcf_hap5:3882321-3897292
NM_021983.4 at chr6_ssto_hap7:3850431-3865402

RefSeq Genes

HLA-DRB4 at chr6_ssto_hap7:3850431-3865402 - (NM_021983) major histocompatibility complex, class II, DR beta 4 precursor
HLA-DRB4 at chr6_mcf_hap5:3882321-3897292 - (NM_021983) major histocompatibility complex, class II, DR beta 4 precursor

Basic Gene Annotation Set from GENCODE Version 19

HLA-DRB4 at chr6_ssto_hap7:3850431-3865394

Comprehensive Gene Annotation Set from GENCODE Version 19

HLA-DRB4 at chr6_ssto_hap7:3850431-3865394

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

HLA-DRB4 at chr6_mann_hap4:3846059-3861007
HLA-DRB4 at chr6_mcf_hap5:3882321-3897284
HLA-DRB4 at chr6_ssto_hap7:3850431-3865394

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

HLA-DRB4 at chr6_mann_hap4:3846059-3861007
HLA-DRB4 at chr6_mcf_hap5:3882321-3897284
HLA-DRB4 at chr6_ssto_hap7:3850431-3865394

Human Aligned mRNA Search Results

AF361548 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*0103101 allele, complete cds.
AF361549 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01033 allele, complete cds.
BC005312 - Homo sapiens major histocompatibility complex, class II, DR beta 4, mRNA (cDNA clone MGC:12387 IMAGE:3933019), complete cds.
DQ284431 - Homo sapiens clone ps1-17-T7 MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01030101 allele, complete cds.
DQ284433 - Homo sapiens clone ps1-6-T7 MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*01030101 variant allele, complete cds.
GQ891550 - Homo sapiens MHC class II antigen (HLA-DRB4) mRNA, HLA-DRB4*0909 allele, complete cds.
M13278 - Human MHC HLA-DR4 first domain coding region of DR-beta chain mRNA (Dw4).
M13279 - Human MHC HLA-DR4 DQ-beta chain first variable domain mRNA, clone KT3c21.
M16731 - Human MHC class II HLA-DR4 I first domain coding region fo DR-beta chain mRNA (Dw4).
M16732 - Human MHC class II HLA-DR4/w53 first domain coding region fo DR-beta chain mRNA (Dw4).
M17381 - Human MHC class II HLA-DR-beta mRNA (DR4), partial cds.
U70543 - Homo sapiens MHC class II antigen (HLA-DRB4) pseudogene mRNA, null allele HLA-DRB4*0201N, partial cds.
U70544 - Homo sapiens HLA class II DRB4 null antigen (HLA-DRB4) pseudogene mRNA, null allele HLA-DRB4*0201N, partial cds.
AK292151 - Homo sapiens cDNA FLJ76360 complete cds, highly similar to Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
AF048707 - Homo sapiens MHC class II antigen HLA-DR mRNA (HLA-DRB4*01 variant allele), partial cds.

BT025473 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
  881   86.9%  6_ssto_hap7     +-   3978708   3993113  BT025473     6   895  1195
  917   85.2%  6_mann_hap4     +-   3950618   4010114  BT025473     6   963  1195
  664   87.7%          6     +-  32548521  32552155  BT025473   150   814  1195
  659   85.8%  6_mcf_hap5     +-   3883453   3887553  BT025473   155   814  1195
  639   85.8%  6_dbb_hap3     +-   3776252   3785685  BT025473   155   812  1195
  626   76.7%  6_apd_hap1     +-   4013827   4017979  BT025473   153   814  1195
  608   77.5%  6_ssto_hap7     +-   4157214   4161350  BT025473   169   814  1195
  619   76.8%  6_qbl_hap6     +-   3957671   3961823  BT025473   153   814  1195
  321   76.4%  6_cox_hap2     +-   3898000   3911770  BT025473     6   425  1195

Ensembl Genes

HLA-DRB4 at chr6_ssto_hap7:3850431-3865394 - (ENST00000411565)

Vega Protein-Coding Annotations

OTTHUMT00000311464 at chr6_mann_hap4:3846059-3861007
OTTHUMT00000312473 at chr6_mcf_hap5:3882321-3897284
OTTHUMT00000272888 at chr6_ssto_hap7:3850431-3865394