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UCSC Genes

FIP1L1 (uc003hae.3) at chr4:54294194-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 2, mRNA.
FIP1L1 (uc011bzu.2) at chr4:54243820-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 2, mRNA.
FIP1L1 (uc011bzt.1) at chr4:54243820-54307150 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 1, mRNA.
FIP1L1 (uc010ign.3) at chr4:54265897-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 3, mRNA.
FIP1L1 (uc003hab.3) at chr4:54243970-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 1, mRNA.
FIP1L1 (uc003gzz.3) at chr4:54243820-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 3, mRNA.
FIP1L1 (uc003gzy.3) at chr4:54243820-54326103 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 1, mRNA.
FIP1L1 (uc003gzx.4) at chr4:54243820-54294385 - Homo sapiens FIP1 like 1 (S. cerevisiae) (FIP1L1), transcript variant 2, mRNA.
PAPOLA (uc010avp.3) at chr14:96968713-97033453 - Homo sapiens poly(A) polymerase alpha (PAPOLA), transcript variant 1, mRNA.
CPSF2 (uc001yah.2) at chr14:92588298-92630543 - Homo sapiens cleavage and polyadenylation specific factor 2, 100kDa (CPSF2), mRNA.
PAPOLA (uc001yfq.3) at chr14:96968713-97033453 - Homo sapiens poly(A) polymerase alpha (PAPOLA), transcript variant 1, mRNA.
PAPOLA (uc001yfr.3) at chr14:96968713-97033453 - Homo sapiens poly(A) polymerase alpha (PAPOLA), transcript variant 1, mRNA.
CSTF3 (uc001muh.3) at chr11:33106130-33183037 - Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa (CSTF3), transcript variant 1, mRNA.
CSTF2 (uc004egh.3) at chrX:100075348-100095923 - Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa (CSTF2), mRNA.
CPSF1 (uc003zcj.3) at chr8:145618446-145634733 - Homo sapiens cleavage and polyadenylation specific factor 1, 160kDa (CPSF1), mRNA.
CPSF4 (uc003uqj.3) at chr7:99036563-99054996 - Homo sapiens cleavage and polyadenylation specific factor 4, 30kDa (CPSF4), transcript variant 1, mRNA.
CPSF3 (uc002qzo.2) at chr2:9563666-9613239 - Homo sapiens cleavage and polyadenylation specific factor 3, 73kDa (CPSF3), mRNA.
CPSF3 (uc002qzp.2) at chr2:9564013-9613239 - Homo sapiens cleavage and polyadenylation specific factor 3, 73kDa (CPSF3), mRNA.
PDGFRA (uc003han.4) at chr4:55095264-55164412 - Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA.
PDGFRA (uc010igq.1) at chr4:55095264-55146925 - Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001134938.1 at chr4:54243820-54326103
NM_001134937.1 at chr4:54243820-54326103
NM_030917.3 at chr4:54243820-54326103

RefSeq Genes

FIP1L1 at chr4:54243820-54326103 - (NM_001134937) pre-mRNA 3'-end-processing factor FIP1 isoform 2
FIP1L1 at chr4:54243820-54326103 - (NM_001134938) pre-mRNA 3'-end-processing factor FIP1 isoform 3
FIP1L1 at chr4:54243808-54327029 - (NM_030917) pre-mRNA 3'-end-processing factor FIP1 isoform 1

Non-Human RefSeq Genes

fip1l1 at chr4:54250006-54325619 - (NM_001044425) pre-mRNA 3'-end-processing factor FIP1
FIP1L1 at chr4:54243840-54326083 - (NM_001270926) pre-mRNA 3'-end-processing factor FIP1
FIP1L1 at chr4:54243828-54325780 - (NM_001206690) pre-mRNA 3'-end-processing factor FIP1
Fip1l1 at chr4:54243919-54325773 - (NM_024183) pre-mRNA 3'-end-processing factor FIP1 isoform 2
Fip1l1 at chr4:54243919-54325773 - (NM_001159574) pre-mRNA 3'-end-processing factor FIP1 isoform 3
Fip1l1 at chr4:54243919-54325722 - (NM_001008295) pre-mRNA 3'-end-processing factor FIP1
FIP1L1 at chr4:54243818-54325842 - (NM_001132300) pre-mRNA 3'-end-processing factor FIP1
Fip1l1 at chr4:54243919-54325773 - (NM_001159573) pre-mRNA 3'-end-processing factor FIP1 isoform 1
fip1l1.S at chr4:54244048-54325619 - (NM_001094614) factor interacting with PAPOLA and CPSF1 S homeolog
fip1l1b at chr4:54244060-54325559 - (NM_001006042) pre-mRNA 3'-end-processing factor FIP1

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

FIP1L1 at chr4:54243808-54327029
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

FIP1L1 at chr4:54243808-54327029
FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from GENCODE Version 19

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244385-54256016

Comprehensive Gene Annotation Set from GENCODE Version 19

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244385-54256016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244385-54256016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244385-54256016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

FIP1L1 at chr4:54243810-54256764
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243812-54325835
FIP1L1 at chr4:54243838-54294388
FIP1L1 at chr4:54243863-54325788
FIP1L1 at chr4:54243970-54325788
FIP1L1 at chr4:54244006-55161439
FIP1L1 at chr4:54244010-54307150
FIP1L1 at chr4:54244385-54256016
FIP1L1 at chr4:54248445-54325785
FIP1L1 at chr4:54292003-54325788
FIP1L1 at chr4:54294233-54327028
FIP1L1 at chr4:54308420-54319298
FIP1L1 at chr4:54324718-54325569

International Knockout Mouse Consortium Genes Mapped to Human Genome

Fip1l1_44312 at chr4:54243820-54326103
Fip1l1_80388 at chr4:54243820-54326103
Fip1l1_VG18836 at chr4:54243820-54326103

Human Aligned mRNA Search Results

BC011543 - Homo sapiens FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:3874821), partial cds.
BC017724 - Homo sapiens FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:21370 IMAGE:3452247), complete cds.
BC024016 - Homo sapiens FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:26986 IMAGE:4826276), complete cds.
BC052959 - Homo sapiens FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:50984 IMAGE:4838737), complete cds.
AY229892 - Homo sapiens FIP1L1/PDGFRA fusion protein (FIP1L1/PDGFRA fusion) mRNA, complete cds; alternatively spliced.
BC110383 - Homo sapiens FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:111047 IMAGE:5165430), complete cds.

Non-Human Aligned mRNA Search Results

BC003263 - Mus musculus FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130), complete cds.
CR760290 - Xenopus tropicalis finished cDNA, clone TNeu042g08.
CR761784 - Xenopus tropicalis finished cDNA, clone TGas014m19.
BC085767 - Rattus norvegicus FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:93674 IMAGE:7192362), complete cds.
EU224276 - Rattus norvegicus FIP1-like 1 (Fip1l1) mRNA, complete cds.
JU320033 - TSA: Macaca mulatta Mamu_506617 mRNA sequence.
JU320034 - TSA: Macaca mulatta Mamu_506618 mRNA sequence.
JU336545 - TSA: Macaca mulatta Mamu_506621 mRNA sequence.
JU336546 - TSA: Macaca mulatta Mamu_506620 mRNA sequence.
JU336547 - TSA: Macaca mulatta Mamu_506619 mRNA sequence.
JU470604 - TSA: Macaca mulatta Mamu_362194 mRNA sequence.
JU477361 - TSA: Macaca mulatta Mamu_362197 mRNA sequence.
JU477362 - TSA: Macaca mulatta Mamu_362193 mRNA sequence.
JU477363 - TSA: Macaca mulatta Mamu_362195 mRNA sequence.
JU477364 - TSA: Macaca mulatta Mamu_362196 mRNA sequence.
JU477365 - TSA: Macaca mulatta Mamu_362198 mRNA sequence.
JV048341 - TSA: Macaca mulatta Mamu_407456 mRNA sequence.
JV048342 - TSA: Macaca mulatta Mamu_407460 mRNA sequence.
JV048343 - TSA: Macaca mulatta Mamu_407459 mRNA sequence.
AB174211 - Macaca fascicularis brain cDNA clone: QtrA-15444, similar to human FIP1 like 1 (S. cerevisiae) (FIP1L1), mRNA, RefSeq: NM_030917.2.
AB170346 - Macaca fascicularis brain cDNA clone: QmoA-10441, similar to human FIP1 like 1 (S. cerevisiae) (FIP1L1), mRNA, RefSeq: NM_030917.2.

Ensembl Genes

FIP1L1 at chr4:54308420-54319298 - (ENST00000511055)
FIP1L1 at chr4:54292003-54325788 - (ENST00000513008)
FIP1L1 at chr4:54244385-54256016 - (ENST00000510668)
FIP1L1 at chr4:54244006-55161439 - (ENST00000507166)
FIP1L1 at chr4:54243863-54325788 - (ENST00000306932)
FIP1L1 at chr4:54243812-54325835 - (ENST00000337488)
FIP1L1 at chr4:54243810-54256764 - (ENST00000511376)
FIP1L1 at chr4:54243812-54325835 - (ENST00000358575)
FIP1L1 at chr4:54243838-54294388 - (ENST00000507922)
FIP1L1 at chr4:54243970-54325788 - (ENST00000505125)
FIP1L1 at chr4:54244010-54307150 - (ENST00000513975)
FIP1L1 at chr4:54248445-54325785 - (ENST00000514543)
FIP1L1 at chr4:54294233-54327028 - (ENST00000504094)
FIP1L1 at chr4:54324718-54325569 - (ENST00000507206)

Vega Protein-Coding Annotations

OTTHUMT00000361573 at chr4:54243810-54256764
OTTHUMT00000361314 at chr4:54243812-54325835
OTTHUMT00000250602 at chr4:54243812-54325835
OTTHUMT00000361570 at chr4:54243838-54294388
OTTHUMT00000361315 at chr4:54243863-54325788
OTTHUMT00000361316 at chr4:54243970-54325788
OTTHUMT00000361317 at chr4:54244006-55161439
OTTHUMT00000361567 at chr4:54244010-54307150
OTTHUMT00000361576 at chr4:54244385-54256016
OTTHUMT00000361572 at chr4:54248445-54325785
OTTHUMT00000361569 at chr4:54292003-54325788
OTTHUMT00000361571 at chr4:54294233-54327028
OTTHUMT00000361575 at chr4:54308420-54319298
OTTHUMT00000361574 at chr4:54324718-54325569