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Gencode Genes

EXOSC9 (ENST00000243498.9) at chr4:121801317-121816909 - Homo sapiens exosome component 9 (EXOSC9), transcript variant 2, mRNA. (from RefSeq NM_005033)
EXOSC9 (ENST00000513654.5) at chr4:121801323-121817021 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000512454.5) at chr4:121801593-121816911 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000511454.5) at chr4:121801325-121811641 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt D6RAP4)
EXOSC9 (ENST00000511132.1) at chr4:121804732-121814047 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H0Y9L5)
EXOSC9 (ENST00000509980.5) at chr4:121801318-121815403 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000509800.5) at chr4:121801346-121811660 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt D6R905)
EXOSC9 (ENST00000508212.5) at chr4:121802738-121813293 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000506201.1) at chr4:121804499-121807868 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000503236.1) at chr4:121809986-121816840 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000503139.5) at chr4:121804734-121814627 - exosome component 9 (from HGNC EXOSC9)
EXOSC9 (ENST00000379663.7) at chr4:121801320-121816909 - Homo sapiens exosome component 9 (EXOSC9), transcript variant 1, mRNA. (from RefSeq NM_001034194)
EXOSC3 (ENST00000465229.5) at chr9:37766978-37785061 - Non-catalytic component of the RNA exosome complex which  has 3'->5' exoribonuclease activity and participates in a  multitude of cellular RNA processing and degradation events. In  the nucleus, the RNA exosome complex is involved in proper  maturation of stable RNA species such as rRNA, snRNA and snoRNA,  in the elimination of RNA processing by-products and non-coding  'pervasive' transcripts, such as antisense RNA species and  promoter-upstream transcripts (PROMPTs), and of mRNAs with  processing defects, thereby limiting or excluding their export to  the cytoplasm. The RNA exosome may be involved in Ig class switch  recombination (CSR) and/or Ig variable region somatic  hypermutation (SHM) by targeting AICDA deamination activity to  transcribed dsDNA substrates. In the cytoplasm, the RNA exosome  complex is involved in general mRNA turnover and specifically  degrades inherently unstable mRNAs containing AU-rich elements  (AREs) within their 3' untranslated regions, and in RNA  surveillance pathways, preventing translation of aberrant mRNAs.  It seems to be involved in degradation of histone mRNA. The  catalytic inactive RNA exosome core complex of 9 subunits (Exo-9)  is proposed to play a pivotal role in the binding and presentation  of RNA for ribonucleolysis, and to serve as a scaffold for the  association with catalytic subunits and accessory proteins or  complexes. EXOSC3 as peripheral part of the Exo-9 complex  stabilizes the hexameric ring of RNase PH-domain subunits through  contacts with EXOSC9 and EXOSC5. (from UniProt Q9NQT5)
EXOSC3 (ENST00000396521.3) at chr9:37780607-37785064 - Homo sapiens exosome component 3 (EXOSC3), transcript variant 2, mRNA. (from RefSeq NM_001002269)
EXOSC3 (ENST00000327304.10) at chr9:37779714-37785064 - Homo sapiens exosome component 3 (EXOSC3), transcript variant 1, mRNA. (from RefSeq NM_016042)
SUMO1 (ENST00000392245.5) at chr2:202206187-202238599 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 2, mRNA. (from RefSeq NM_001005781)
SUMO1 (ENST00000392244.7) at chr2:202206768-202238566 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 3, mRNA. (from RefSeq NM_001005782)
SUMO1 (ENST00000392246.6) at chr2:202206180-202238608 - Homo sapiens small ubiquitin like modifier 1 (SUMO1), transcript variant 1, mRNA. (from RefSeq NM_003352)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_005033.2 at chr4:121801317-121817021
NM_001034194.1 at chr4:121801317-121817021

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011532035.3 at chr4:121801325-121815613
XR_001741241.2 at chr4:121801325-121817021

RefSeq Genes

EXOSC9 at chr4:121801323-121817021 - (NM_001034194) exosome complex component RRP45 isoform 1
EXOSC9 at chr4:121801323-121817021 - (NM_005033) exosome complex component RRP45 isoform 2

Non-Human RefSeq Genes

exosc9 at chr4:121801425-121813381 - (NM_001126754) exosome complex component RRP45
EXOSC9 at chr4:121801425-121816454 - (NM_001034828) exosome complex component RRP45
Exosc9 at chr4:121801416-121816952 - (NM_001025406) exosome complex component RRP45
EXOSC9 at chr4:121801425-121816893 - (NM_001035053) exosome complex component RRP45
Exosc9 at chr4:121801416-121816460 - (NM_019393) exosome complex component RRP45
exosc9 at chr4:121801434-121813342 - (NM_001006077) exosome complex component RRP45
exosc9.L at chr4:121801425-121816430 - (NM_001091970) exosome component 9 L homeolog

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801593-121816911

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

EXOSC9 at chr4:121801317-121816909
EXOSC9 at chr4:121801318-121815403
EXOSC9 at chr4:121801320-121816909
EXOSC9 at chr4:121801323-121817021
EXOSC9 at chr4:121801325-121811641
EXOSC9 at chr4:121801346-121811660
EXOSC9 at chr4:121801593-121816911
EXOSC9 at chr4:121802738-121813293
EXOSC9 at chr4:121804499-121807868
EXOSC9 at chr4:121804732-121814047
EXOSC9 at chr4:121804734-121814627
EXOSC9 at chr4:121809986-121816840

International Knockout Mouse Consortium Genes Mapped to Human Genome

Exosc9_29242 at chr4:121801317-121817021
Exosc9_29243 at chr4:121801317-121817021
Exosc9_89428 at chr4:121801317-121817021

BC142978 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1453  100.0%          4     + 121801351 121816915  BC142978     6  1458  1473

Non-Human Aligned mRNA Search Results

BC164713 - Danio rerio exosome component 9, mRNA (cDNA clone MGC:191888 IMAGE:100060197), complete cds.
BC158075 - Mus musculus exosome component 9, mRNA (cDNA clone MGC:189872 IMAGE:9007372), complete cds.
BC083243 - Danio rerio exosome component 9, mRNA (cDNA clone MGC:101680 IMAGE:7227094), complete cds.
BC005622 - Mus musculus exosome component 9, mRNA (cDNA clone MGC:11686 IMAGE:3711930), complete cds.
BC052156 - Mus musculus exosome component 9, mRNA (cDNA clone MGC:59294 IMAGE:6394529), complete cds.
BC097413 - Rattus norvegicus exosome component 9, mRNA (cDNA clone MGC:114458 IMAGE:7454278), complete cds.
BC104587 - Bos taurus exosome component 9, mRNA (cDNA clone MGC:128968 IMAGE:8120754), complete cds.
JT405769 - TSA: Ictalurus punctatus clc_264130 mRNA sequence.
JU335046 - TSA: Macaca mulatta Mamu_521041 mRNA sequence.