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UCSC Genes

EPHA4 (uc002vmq.3) at chr2:222282747-222437010 - Homo sapiens EPH receptor A4 (EPHA4), mRNA.
EPHA4 (uc010zlm.1) at chr2:222289929-222437010 - Homo sapiens EPH receptor A4 (EPHA4), mRNA.
EPHA4 (uc002vmr.2) at chr2:222289929-222437001 - Homo sapiens EPH receptor A4 (EPHA4), mRNA.
NGEF (uc002vts.2) at chr2:233743396-233877951 - Homo sapiens neuronal guanine nucleotide exchange factor (NGEF), transcript variant 1, mRNA.
NGEF (uc010zmm.1) at chr2:233743396-233766150 - Homo sapiens neuronal guanine nucleotide exchange factor (NGEF), transcript variant 2, mRNA.
SIPA1L1 (uc001xms.3) at chr14:71996029-72206120 - Homo sapiens signal-induced proliferation-associated 1 like 1 (SIPA1L1), mRNA.
KIDINS220 (uc002qzc.2) at chr2:8868987-8977755 - Homo sapiens kinase D-interacting substrate, 220kDa (KIDINS220), mRNA.
EFNA1 (uc001fhi.3) at chr1:155100349-155107386 - Homo sapiens ephrin-A1 (EFNA1), transcript variant 2, mRNA.
CHN1 (uc002uji.3) at chr2:175664042-175869981 - Homo sapiens chimerin 1 (CHN1), transcript variant 1, mRNA.
CHN1 (uc002ujj.3) at chr2:175664042-175870107 - Homo sapiens chimerin 1 (CHN1), transcript variant 4, non-coding RNA.
EFNA1 (uc001fhh.3) at chr1:155100349-155107386 - Homo sapiens ephrin-A1 (EFNA1), transcript variant 1, mRNA.
VAPB (uc002xza.3) at chr20:56964175-57026156 - Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 1, mRNA.
ARHGEF15 (uc002glc.3) at chr17:8213556-8225834 - Homo sapiens Rho guanine nucleotide exchange factor (GEF) 15 (ARHGEF15), transcript variant 1, mRNA.
ARHGEF15 (uc002gld.3) at chr17:8214140-8225834 - Homo sapiens Rho guanine nucleotide exchange factor (GEF) 15 (ARHGEF15), transcript variant 2, mRNA.
ARHGEF15 (uc010vuw.2) at chr17:8215309-8225834 - Homo sapiens Rho guanine nucleotide exchange factor (GEF) 15 (ARHGEF15), transcript variant 2, mRNA.
CDK5R1 (uc002hhn.3) at chr17:30814105-30818271 - Homo sapiens cyclin-dependent kinase 5, regulatory subunit 1 (p35) (CDK5R1), mRNA.
CDK5R1 (uc021tux.1) at chr17:30814639-30815562 - Homo sapiens cyclin-dependent kinase 5, regulatory subunit 1 (p35) (CDK5R1), mRNA.
CDK5R1 (uc010wca.1) at chr17:30814638-30815558 - Homo sapiens cyclin-dependent kinase 5, regulatory subunit 1 (p35) (CDK5R1), mRNA.
EFNB2 (uc001vqi.3) at chr13:107142079-107187388 - Homo sapiens ephrin-B2 (EFNB2), mRNA.
EFNA2 (uc002lry.2) at chr19:1286153-1301429 - Homo sapiens ephrin-A2 (EFNA2), mRNA.
CDK5 (uc003wir.2) at chr7:150750899-150755052 - Homo sapiens cyclin-dependent kinase 5 (CDK5), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_004438.4 at chr2:222282747-222437078
NM_001304537.1 at chr2:222282747-222437078
NM_001304536.1 at chr2:222282747-222438922

RefSeq Genes

EPHA4 at chr2:222282747-222437024 - (NM_004438) ephrin type-A receptor 4 isoform a precursor
EPHA4 at chr2:222282747-222438922 - (NM_001304536) ephrin type-A receptor 4 isoform a precursor
EPHA4 at chr2:222282747-222437024 - (NM_001304537) ephrin type-A receptor 4 isoform b
EPHA4 at chr2:222282747-222437024 - (NM_001363748) ephrin type-A receptor 4 isoform c precursor

Non-Human RefSeq Genes

epha4 at chr2:222282796-222433506 - (NM_001142103) ephrin type-A receptor 4 precursor
EPHA4 at chr2:222290748-222436968 - (NM_001134967) ephrin type-A receptor 4 precursor
EPHA4 at chr2:222290125-222437000 - (NM_001260870) ephrin type-A receptor 4 precursor
EPHA4 at chr2:222379630-222436996 - (NM_001083441) ephrin type-A receptor 4 precursor
Epha4 at chr2:222282750-222437025 - (NM_007936) ephrin type-A receptor 4 precursor
Epha4 at chr2:222282755-222437024 - (NM_001162411) ephrin type-A receptor 4 precursor
EPHA4 at chr2:222290292-222436968 - (NM_204781) ephrin type-A receptor 4 precursor
epha4.L at chr2:222290653-222433506 - (NM_001085992) ephrin type-A receptor 4-B precursor
epha4.S at chr2:222290748-222433506 - (NM_001096714) ephrin type-A receptor 4-A precursor
epha4a at chr2:222290691-222433506 - (NM_001005919) ephrin type-A receptor 4a isoform 2 precursor
epha4a at chr2:222290691-222433506 - (NM_001365171) ephrin type-A receptor 4a isoform 1 precursor
epha4b at chr2:222294701-222429114 - (NM_153658) eph receptor A4b precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

EPHA4 at chr2:222282747-222437024
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282747-222437024
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from GENCODE Version 19

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290644-222437016

Comprehensive Gene Annotation Set from GENCODE Version 19

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222290644-222437016
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290644-222437016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222290644-222437016
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290644-222437016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222290644-222437016
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290644-222437016

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

EPHA4 at chr2:222282747-222290295
EPHA4 at chr2:222282749-222437010
EPHA4 at chr2:222285165-222290260
EPHA4 at chr2:222290319-222437003
EPHA4 at chr2:222290621-222438922
EPHA4 at chr2:222290635-222298969
EPHA4 at chr2:222290644-222437016
EPHA4 at chr2:222301177-222302216
EPHA4 at chr2:222322609-222437020
EPHA4 at chr2:222322674-222367280
EPHA4 at chr2:222347160-222366064
EPHA4 at chr2:222428713-222437020
EPHA4 at chr2:222428717-222434201
EPHA4 at chr2:222428826-222437078
EPHA4 at chr2:222428999-222438878

International Knockout Mouse Consortium Genes Mapped to Human Genome

Epha4_66074 at chr2:222282747-222437010
Epha4_81367 at chr2:222282747-222437010

Human Aligned mRNA Search Results

BC105002 - Homo sapiens EPH receptor A4, mRNA (cDNA clone MGC:132662 IMAGE:8144005), complete cds.
BC026327 - Homo sapiens EPH receptor A4, mRNA (cDNA clone MGC:26318 IMAGE:4814429), complete cds.
BC105000 - Homo sapiens EPH receptor A4, mRNA (cDNA clone MGC:132660 IMAGE:8144003), complete cds.
AK290306 - Homo sapiens cDNA FLJ78431 complete cds, highly similar to Homo sapiens EPH receptor A4 (EPHA4), mRNA.
AK225181 - Homo sapiens mRNA for ephrin receptor EphA4 variant, clone: CBR06796.
BC036860 - Homo sapiens mRNA similar to EphA4 (cDNA clone IMAGE:5165840).
AK312380 - Homo sapiens cDNA, FLJ92707, highly similar to Homo sapiens EphA4 (EPHA4), mRNA.

Non-Human Aligned mRNA Search Results

BC098529 - Danio rerio eph receptor A4a, mRNA (cDNA clone MGC:109882 IMAGE:2639282), complete cds.
LC382454 - Carassius auratus EphA4a mRNA for ephA4a protein, complete cds.
AF369381 - Danio rerio Eph receptor EphA4b (RTK2) mRNA, complete cds.
AY335759 - Synthetic construct Homo sapiens EphA4 (EPHA4) mRNA, partial cds.
EU232010 - Pantherophis guttatus EphA4 mRNA, partial cds.
AY667434 - Scyliorhinus canicula EphA4 mRNA, partial cds.
BC004782 - Mus musculus Eph receptor A4, mRNA (cDNA clone MGC:8084 IMAGE:3588285), complete cds.
BC133500 - Bos taurus EPH receptor A4, mRNA (cDNA clone MGC:142975 IMAGE:8316217), complete cds.
KM655611 - Danio rerio Epha4a mRNA, partial cds.
BC052164 - Mus musculus Eph receptor A4, mRNA (cDNA clone MGC:59362 IMAGE:6512978), complete cds.
JT409635 - TSA: Ictalurus punctatus clc_366228 mRNA sequence.
JU333343 - TSA: Macaca mulatta Mamu_514161 mRNA sequence.
AB794079 - Lacerta agilis EPHA4 mRNA for EPH receptor A4, partial cds.
EU983276 - Sus scrofa ephrin receptor A4 (EphA4) mRNA, complete cds.
AB736187 - Pelodiscus sinensis EphA4 mRNA for Eph receptor A4, partial cds.
AB173364 - Macaca fascicularis brain cDNA clone: QflA-22235, similar to human EphA4 (EPHA4), mRNA, RefSeq: NM_004438.3.
AB171643 - Macaca fascicularis brain cDNA clone: QflA-22251, similar to human EphA4 (EPHA4), mRNA, RefSeq: NM_004438.3.
AB171573 - Macaca fascicularis brain cDNA clone: QflA-13703, similar to human EphA4 (EPHA4), mRNA, RefSeq: NM_004438.3.

Ensembl Genes

EPHA4 at chr2:222428826-222437078 - (ENST00000541600)
EPHA4 at chr2:222428713-222437020 - (ENST00000415749)
EPHA4 at chr2:222322674-222367280 - (ENST00000441679)
EPHA4 at chr2:222301177-222302216 - (ENST00000495693)
EPHA4 at chr2:222290635-222298969 - (ENST00000424339)
EPHA4 at chr2:222290319-222437003 - (ENST00000409854)
EPHA4 at chr2:222282749-222437010 - (ENST00000281821)
EPHA4 at chr2:222282747-222290295 - (ENST00000469354)
EPHA4 at chr2:222285165-222290260 - (ENST00000472696)
EPHA4 at chr2:222290621-222438922 - (ENST00000409938)
EPHA4 at chr2:222290644-222437016 - (ENST00000392071)
EPHA4 at chr2:222322609-222437020 - (ENST00000443796)
EPHA4 at chr2:222347160-222366064 - (ENST00000463446)
EPHA4 at chr2:222428717-222434201 - (ENST00000419964)
EPHA4 at chr2:222428999-222438878 - (ENST00000434266)

Vega Protein-Coding Annotations

OTTHUMT00000335499 at chr2:222282747-222290295
OTTHUMT00000335500 at chr2:222285165-222290260
OTTHUMT00000332695 at chr2:222290283-222437078
OTTHUMT00000332696 at chr2:222290319-222437003
OTTHUMT00000256836 at chr2:222290621-222438922
OTTHUMT00000332703 at chr2:222290624-222291344
OTTHUMT00000332702 at chr2:222290635-222298969
OTTHUMT00000332701 at chr2:222301177-222302216
OTTHUMT00000333850 at chr2:222322609-222437020
OTTHUMT00000332699 at chr2:222322674-222367280
OTTHUMT00000332700 at chr2:222347160-222366064
OTTHUMT00000333851 at chr2:222428713-222437020
OTTHUMT00000332698 at chr2:222428717-222434201
OTTHUMT00000332697 at chr2:222428999-222438878