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Gencode Genes

DPPA2 (ENST00000478945.1) at chr3:109293788-109316517 - Homo sapiens developmental pluripotency associated 2 (DPPA2), mRNA. (from RefSeq NM_138815)
DUBR (ENST00000671419.1) at chr3:107248543-107285660 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000670833.1) at chr3:107240696-107294990 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000669723.1) at chr3:107240692-107251729 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000669523.1) at chr3:107240664-107292218 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667856.1) at chr3:107240718-107348464 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667710.1) at chr3:107240718-107285662 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667634.1) at chr3:107247950-107251773 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667620.1) at chr3:107240690-107251773 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667603.1) at chr3:107240685-107286585 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667442.1) at chr3:107240690-107266967 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000667411.1) at chr3:107240714-107292686 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000666345.1) at chr3:107283193-107294990 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000665694.1) at chr3:107240718-107248882 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000663370.1) at chr3:107240690-107294969 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000663366.1) at chr3:107220744-107292018 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000662418.1) at chr3:107240718-107247033 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000660597.1) at chr3:107240664-107251102 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000660575.1) at chr3:107240712-107251725 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000659955.1) at chr3:107240718-107285664 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000659830.1) at chr3:107240727-107292020 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000657581.1) at chr3:107240715-107285663 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000657097.1) at chr3:107240690-107245607 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000655772.1) at chr3:107240720-107291915 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000654269.1) at chr3:107240685-107241787 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000653509.1) at chr3:107240718-107294918 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000653298.1) at chr3:107240692-107285662 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000651804.1) at chr3:107240675-107251729 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000495228.2) at chr3:107240690-107285664 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000473550.1) at chr3:107240721-107245508 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000466734.6) at chr3:107240692-107248373 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000463143.5) at chr3:107240692-107326701 - DPPA2 upstream binding RNA (from HGNC DUBR)
DUBR (ENST00000658510.1) at chr3:107240708-107248857 - Homo sapiens DPPA2 upstream binding RNA (DUBR), transcript variant 1, long non-coding RNA. (from RefSeq NR_028301)
DUBR (ENST00000490441.1) at chr3:107240692-107326964 - Homo sapiens DPPA2 upstream binding RNA (DUBR), transcript variant 2, long non-coding RNA. (from RefSeq NR_028302)
DPPA4 (ENST00000335658.6) at chr3:109326141-109337572 - Homo sapiens developmental pluripotency associated 4 (DPPA4), transcript variant 1, mRNA. (from RefSeq NM_018189)
DPPA2P2 (ENST00000418220.1) at chr1:26519354-26520250 - developmental pluripotency associated 2 pseudogene 2 (from HGNC DPPA2P2)
DPPA2P3 (ENST00000411853.1) at chr3:193993331-193993985 - developmental pluripotency associated 2 pseudogene 3 (from HGNC DPPA2P3)
DPPA2P4 (ENST00000563717.2) at chr16:56686851-56688052 - developmental pluripotency associated 2 pseudogene 4 (from HGNC DPPA2P4)
DPPA2P1 (ENST00000428060.1) at chrY:13230884-13231439 - developmental pluripotency associated 2 pseudogene 1 (from HGNC DPPA2P1)
DPPA2P2 (ENST00000626604.1) at chr1_KN196473v1_fix:6972-7868 - developmental pluripotency associated 2 pseudogene 2 (from HGNC DPPA2P2)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_138815.3 at chr3:109293788-109316517
NR_027764.1 at chr3:193993093-193994238

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_011512443.1 at chr3:109293788-109314814
XM_011512445.2 at chr3:109293788-109315722
XM_011512444.3 at chr3:109293788-109316589

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

DPPA2 at chr3:109293788-109316517

RefSeq Genes

DPPA2 at chr3:109293788-109316517 - (NM_138815) developmental pluripotency-associated protein 2
DPPA2P3 at chr3:193993094-193994238 - (NR_027764) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

DPPA2 upstream binding RNA, transcript variant 1 at chr3:107240692-107248872 - (NR_028301.1)
DPPA2 upstream binding RNA, transcript variant 2 at chr3:107240692-107326964 - (NR_028302.1)

Non-Human RefSeq Genes

DPPA2 at chr3:109293827-109314553 - (NM_001266584) developmental pluripotency-associated protein 2
DPPA2 at chr3:193993332-193994190 - (NM_001206470) developmental pluripotency-associated protein 2

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

DPPA2 at chr3:109293788-109316517

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

DPPA2 at chr3:109293788-109316517

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

DPPA2 at chr3:109293788-109316517

Retroposed Genes V9, Including Pseudogenes

DPPA2_HUMAN at chrY:13230633-13231439 - (NM_138815.3-53)
DPPA2_HUMAN at chr4:77380954-77381793 - (NM_138815.3-37)
DPPA2_HUMAN at chr4:77311346-77312216 - (NM_138815.3-35)
DPPA2_HUMAN at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2 at chrY:13230633-13231439 - (NM_138815.3-53)
DPPA2 at chr4:77380954-77381793 - (NM_138815.3-37)
DPPA2 at chr4:77311346-77312216 - (NM_138815.3-35)
DPPA2 at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2 at chrY:13230633-13231439 - (NM_138815.3-53)
DPPA2 at chr4:77380954-77381793 - (NM_138815.3-37)
DPPA2 at chr4:77311346-77312216 - (NM_138815.3-35)
DPPA2 at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2 at chr1:26519117-26520264 - (NM_138815.3-1)
DPPA2 at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2 at chr3:193993093-193994234 - (NM_138815.3-31)
DPPA2 at chr4:77350350-77351216 - (NM_138815.3-36)
DPPA2 at chr9:638302-638861 - (NM_138815.3-44)
DPPA2 at chr1:26519117-26520264 - (NM_138815.3-1)
DPPA2 at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2 at chr3:193993093-193994234 - (NM_138815.3-31)
DPPA2 at chr4:77350350-77351216 - (NM_138815.3-36)
DPPA2 at chr9:638302-638861 - (NM_138815.3-44)
DPPA2_HUMAN at chr1:26519117-26520264 - (NM_138815.3-1)
DPPA2_HUMAN at chr16:56686837-56688298 - (NM_138815.3-13)
DPPA2_HUMAN at chr3:193993093-193994234 - (NM_138815.3-31)
DPPA2_HUMAN at chr4:77350350-77351216 - (NM_138815.3-36)
DPPA2_HUMAN at chr9:638302-638861 - (NM_138815.3-44)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Dppa2_71809 at chr3:109293788-109316517

BC018070 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1253  100.0%          3     - 109293794 109316393  BC018070     3  1255  1271

Human Unaligned mRNA Search Results

NR_027764 - Homo sapiens developmental pluripotency associated 2 pseudogene 3 (DPPA2P3), non-coding RNA.
NR_028301 - Homo sapiens DPPA2 upstream binding RNA (DUBR), transcript variant 1, long non-coding RNA.
NR_028302 - Homo sapiens DPPA2 upstream binding RNA (DUBR), transcript variant 2, long non-coding RNA.

Non-Human Aligned mRNA Search Results

AF490346 - Mus musculus DPPA2 mRNA, complete cds.
BC137768 - Mus musculus developmental pluripotency associated 2, mRNA (cDNA clone MGC:169392 IMAGE:8860787), complete cds.
JV043251 - TSA: Macaca mulatta Mamu_403610 mRNA sequence.