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Gencode Genes

DDX42 (ENST00000578681.5) at chr17:63773863-63819317 - Homo sapiens DEAD-box helicase 42 (DDX42), transcript variant 1, mRNA. (from RefSeq NM_007372)
DDX42 (ENST00000584951.1) at chr17:63813272-63815970 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000584261.5) at chr17:63792486-63806650 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KRV0)
DDX42 (ENST00000584010.5) at chr17:63805508-63819209 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000583590.5) at chr17:63773884-63819317 - ATP-dependent RNA helicase. Binds to partially double-  stranded RNAs (dsRNAs) in order to unwind RNA secondary  structures. Unwinding is promoted in the presence of single-strand  binding proteins. Mediates also RNA duplex formation thereby  displacing the single-strand RNA binding protein. ATP and ADP  modulate its activity: ATP binding and hydrolysis by DDX42  triggers RNA strand separation, whereas the ADP-bound form of the  protein triggers annealing of complementary RNA strands. Involved  in the survival of cells by interacting with TP53BP2 and thereby  counteracting the apoptosis-stimulating activity of TP53BP2.  Relocalizes TP53BP2 to the cytoplasm. (from UniProt Q86XP3)
DDX42 (ENST00000582985.1) at chr17:63816968-63819099 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000581767.1) at chr17:63817073-63819316 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000581477.1) at chr17:63810263-63811271 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000581135.5) at chr17:63773603-63792504 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3QRI2)
DDX42 (ENST00000580108.1) at chr17:63787036-63798196 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000579539.1) at chr17:63816589-63817886 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000579511.1) at chr17:63800151-63806556 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000578593.1) at chr17:63811281-63819247 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000578137.5) at chr17:63787038-63805287 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KTK9)
DDX42 (ENST00000577978.1) at chr17:63800177-63806542 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000577940.6) at chr17:63792529-63813290 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KRE3)
DDX42 (ENST00000457800.3) at chr17:63792531-63819246 - DEAD-box helicase 42 (from HGNC DDX42)
DDX42 (ENST00000389924.7) at chr17:63774170-63819317 - Homo sapiens DEAD-box helicase 42 (DDX42), transcript variant 2, mRNA. (from RefSeq NM_203499)
DDX42 (ENST00000359353.9) at chr17:63774190-63818398 - ATP-dependent RNA helicase. Binds to partially double-  stranded RNAs (dsRNAs) in order to unwind RNA secondary  structures. Unwinding is promoted in the presence of single-strand  binding proteins. Mediates also RNA duplex formation thereby  displacing the single-strand RNA binding protein. ATP and ADP  modulate its activity: ATP binding and hydrolysis by DDX42  triggers RNA strand separation, whereas the ADP-bound form of the  protein triggers annealing of complementary RNA strands. Involved  in the survival of cells by interacting with TP53BP2 and thereby  counteracting the apoptosis-stimulating activity of TP53BP2.  Relocalizes TP53BP2 to the cytoplasm. (from UniProt Q86XP3)
TP53BP2 (ENST00000343537.12) at chr1:223779893-223845947 - Homo sapiens tumor protein p53 binding protein 2 (TP53BP2), transcript variant 1, mRNA. (from RefSeq NM_001031685)
TP53BP2 (ENST00000391878.6) at chr1:223779899-223845930 - Homo sapiens tumor protein p53 binding protein 2 (TP53BP2), transcript variant 2, mRNA. (from RefSeq NM_005426)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_203499.2 at chr17:63774189-63819317
NM_007372.3 at chr17:63774189-63819317

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017024111.1 at chr17:63773856-63819317
XM_006721657.1 at chr17:63773884-63819317
XM_024450558.1 at chr17:63787153-63819314
XM_011524259.2 at chr17:63799811-63819314

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

DDX42 at chr17:63774170-63819317

RefSeq Genes

DDX42 at chr17:63774170-63819317 - (NM_203499) ATP-dependent RNA helicase DDX42
DDX42 at chr17:63774189-63819317 - (NM_007372) ATP-dependent RNA helicase DDX42

Non-Human RefSeq Genes

ddx42.S at chr17:63787044-63818398 - (NM_001092736) DEAD-box helicase 42 S homeolog
DDX42 at chr17:63774290-63819317 - (NM_001132896) ATP-dependent RNA helicase DDX42
ddx42.L at chr17:63787047-63818398 - (NM_001087100) ATP-dependent RNA helicase DDX42
ddx42 at chr17:63787047-63818398 - (NM_001037805) ATP-dependent RNA helicase DDX42
DDX42 at chr17:63787026-63818398 - (NM_001030926) ATP-dependent RNA helicase DDX42
Ddx42 at chr17:63787036-63819280 - (NM_028074) ATP-dependent RNA helicase DDX42 isoform a
Ddx42 at chr17:63800097-63819280 - (NM_001361640) ATP-dependent RNA helicase DDX42 isoform b
Ddx42 at chr17:63800097-63819280 - (NM_001361642) ATP-dependent RNA helicase DDX42 isoform c
Ddx42 at chr17:63787036-63819280 - (NM_001361643) ATP-dependent RNA helicase DDX42 isoform d
Ddx42 at chr17:63800097-63819280 - (NM_001361644) ATP-dependent RNA helicase DDX42 isoform d
Ddx42 at chr17:63787037-63819280 - (NM_001107059) ATP-dependent RNA helicase DDX42
DDX42 at chr17:63774295-63819317 - (NM_001261555) ATP-dependent RNA helicase DDX42

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774170-63819317
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774170-63819317
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63792531-63819246

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

DDX42 at chr17:63773603-63792504
DDX42 at chr17:63773863-63819317
DDX42 at chr17:63773884-63819317
DDX42 at chr17:63774189-63819316
DDX42 at chr17:63774190-63818398
DDX42 at chr17:63787036-63798196
DDX42 at chr17:63787038-63805287
DDX42 at chr17:63792486-63806650
DDX42 at chr17:63792529-63813290
DDX42 at chr17:63792531-63819246
DDX42 at chr17:63800151-63806556
DDX42 at chr17:63800177-63806542
DDX42 at chr17:63805508-63819209
DDX42 at chr17:63810263-63811271
DDX42 at chr17:63811281-63819247
DDX42 at chr17:63813272-63815970
DDX42 at chr17:63816589-63817886
DDX42 at chr17:63816968-63819099
DDX42 at chr17:63817073-63819316

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ddx42_46855 at chr17:63774207-63819317
Ddx42_79531 at chr17:63774207-63819317
Ddx42_89832 at chr17:63774207-63819317
Ddx42_VG16335 at chr17:63774207-63819317

Human Aligned mRNA Search Results

KF612911 - Homo sapiens MAP3K3/DDX42 fusion protein 2 mRNA, partial cds.
KF612910 - Homo sapiens MAP3K3/DDX42 fusion protein 1 mRNA, partial cds.
BC008208 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:3869206), partial cds.
BC015505 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:9119 IMAGE:3905607), complete cds.
BC078667 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:6107393), partial cds.
BC093081 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:111493 IMAGE:30407786), complete cds.
AK126480 - Homo sapiens cDNA FLJ44516 fis, clone UTERU3002600, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA.
AK122737 - Homo sapiens cDNA FLJ16253 fis, clone HLUNG2015184, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA.
AK095772 - Homo sapiens cDNA FLJ38453 fis, clone FEBRA2019663, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA.
AK001964 - Homo sapiens cDNA FLJ11102 fis, clone PLACE1005646, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA.

Non-Human Aligned mRNA Search Results

BC079483 - Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:7148194), partial cds.
BC043977 - Xenopus laevis DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:54025 IMAGE:5571594), complete cds.
JI166390 - TSA: Ascaris suum ASCF_1817_2953 mRNA sequence.
JT416942 - TSA: Ictalurus punctatus aby_k65:774520 mRNA sequence.
JU332782 - TSA: Macaca mulatta Mamu_511181 mRNA sequence.
JU474198 - TSA: Macaca mulatta Mamu_369553 mRNA sequence.
JV046093 - TSA: Macaca mulatta Mamu_407830 mRNA sequence.
JW862665 - TSA: Callorhinchus milii sp.comp1960_c0_seq3 mRNA sequence.
BC019772 - Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:4011808), partial cds.
KT694374 - Mytilus galloprovincialis DDX42 mRNA, complete cds.
KF648293 - Biomphalaria glabrata ATP-dependent RNA helicase DDX42-like protein mRNA, partial cds.
AM422100 - Danio rerio partial mRNA for dead box 42 protein (ddx42 gene).
BC098590 - Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:111815 IMAGE:5600222), complete cds.
BC043036 - Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:57931 IMAGE:5698965), complete cds.