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UCSC Genes

CTSL1P8 (uc022bje.2) at chr9:90459660-90462339 - Homo sapiens cathepsin L1 pseudogene 8 (CTSL1P8), non-coding RNA.
CTSL2 (uc004awt.3) at chr9:99791959-99801592 - Homo sapiens cathepsin L2 (CTSL2), transcript variant 1, mRNA.
CTSL3P (uc004apm.1) at chr9:90387830-90401799 - Homo sapiens cathepsin L family member 3, pseudogene (CTSL3P), non-coding RNA.
CTSL1 (uc004apk.4) at chr9:90340974-90346384 - Homo sapiens cathepsin L1 (CTSL1), transcript variant 4, mRNA.
CTSL1P2 (uc001jer.2) at chr10:48155943-48158691 - Homo sapiens cathepsin L1 pseudogene 2 (CTSL1P2), non-coding RNA.
CTSL2 (uc010msk.3) at chr9:99798603-99801592 - Homo sapiens cathepsin L2 (CTSL2), transcript variant 1, mRNA.
CTSL2 (uc010msj.2) at chr9:99796636-99801592 - Homo sapiens cathepsin L2 (CTSL2), transcript variant 1, mRNA.
CTSL2 (uc010msi.3) at chr9:99791959-99802085 - Homo sapiens cathepsin L2 (CTSL2), transcript variant 2, mRNA.
CTSL1 (uc010mqh.3) at chr9:90340974-90346384 - Homo sapiens cathepsin L1 (CTSL1), transcript variant 5, mRNA.
CTSL2 (uc004awu.3) at chr9:99791959-99822167 - Homo sapiens cathepsin L2 (CTSL2), transcript variant 2, mRNA.
CTSL1 (uc004apl.4) at chr9:90340974-90346384 - Homo sapiens cathepsin L1 (CTSL1), transcript variant 3, mRNA.
CTSL1 (uc004api.3) at chr9:90340974-90346384 - Homo sapiens cathepsin L1 (CTSL1), transcript variant 2, mRNA.
CTSL1 (uc004aph.3) at chr9:90340974-90346384 - Homo sapiens cathepsin L1 (CTSL1), transcript variant 1, mRNA.
CTDSPL2 (uc001ztr.3) at chr15:44719579-44819429 - Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 (CTDSPL2), mRNA.
CTDSPL2 (uc001zts.3) at chr15:44719861-44819429 - Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 (CTDSPL2), mRNA.
CTDSPL2 (uc001ztt.3) at chr15:44719991-44819429 - Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 (CTDSPL2), mRNA.
PLEKHF1 (uc002nsh.4) at chr19:30156327-30166383 - Homo sapiens pleckstrin homology domain containing, family F (with FYVE domain) member 1 (PLEKHF1), mRNA.
PLEKHF1 (uc021ury.1) at chr19:30164747-30165586 - Homo sapiens pleckstrin homology domain containing, family F (with FYVE domain) member 1 (PLEKHF1), mRNA.
NSFL1C (uc002wfc.3) at chr20:1422807-1448337 - Homo sapiens NSFL1 (p97) cofactor (p47) (NSFL1C), transcript variant 1, mRNA.
CD74 (uc003lsc.3) at chr5:149781200-149792499 - Homo sapiens CD74 molecule, major histocompatibility complex, class II invariant chain (CD74), transcript variant 1, mRNA.
HLA-DRB1 (uc011eri.2) at chr6_apd_hap1:3774425-3787546 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 2, mRNA.
HLA-DRB1 (uc021zxt.1) at chr6_ssto_hap7:3850434-3993164 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 2, mRNA.
HLA-DRB1 (uc011gjy.2) at chr6_dbb_hap3:3820447-3835660 - RecName: Full=HLA class II histocompatibility antigen, DRB1-7 beta chain; AltName: Full=MHC class II antigen DRB1*7;          Short=DR-7;          Short=DR7; Flags: Precursor;
HLA-DRB1 (uc011hem.2) at chr6_mann_hap4:3994890-4010093 - RecName: Full=HLA class II histocompatibility antigen, DRB1-7 beta chain; AltName: Full=MHC class II antigen DRB1*7;          Short=DR-7;          Short=DR7; Flags: Precursor;
TGM3 (uc002wfx.4) at chr20:2276613-2321725 - Homo sapiens transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) (TGM3), mRNA.
HLA-DQA1 (uc011fnq.1) at chr6_cox_hap2:4055582-4061797 - RecName: Full=HLA class II histocompatibility antigen, DQ alpha 1 chain; AltName: Full=DC-1 alpha chain; AltName: Full=DC-alpha; AltName: Full=HLA-DCA; AltName: Full=MHC class II DQA1; Flags: Precursor;
HLA-DQA1 (uc011ixf.1) at chr6_qbl_hap6:3842041-3848256 - RecName: Full=HLA class II histocompatibility antigen, DQ alpha 1 chain; AltName: Full=DC-1 alpha chain; AltName: Full=DC-alpha; AltName: Full=HLA-DCA; AltName: Full=MHC class II DQA1; Flags: Precursor;
HLA-DQB1 (uc011hzw.2) at chr6_mcf_hap5:3961839-3968732 - RecName: Full=HLA class II histocompatibility antigen, DQ beta 1 chain; AltName: Full=MHC class II antigen DQB1; Flags: Precursor;
HLA-DPB1 (uc011fpj.2) at chr6_cox_hap2:4487883-4501576 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPA1 (uc003ocs.2) at chr6:33032346-33041454 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011esm.2) at chr6_apd_hap1:4319165-4328255 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011fpg.2) at chr6_cox_hap2:4476526-4492734 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc011gll.2) at chr6_dbb_hap3:4313685-4322793 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011hfz.2) at chr6_mann_hap4:4489886-4498994 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011ibh.2) at chr6_mcf_hap5:4369219-4378309 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011iys.2) at chr6_qbl_hap6:4264797-4273905 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011juc.2) at chr6_ssto_hap7:4512850-4521958 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc021ywh.1) at chr6:33032346-33048555 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021ywg.1) at chr6:33032346-33048555 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zka.1) at chr6_apd_hap1:4319165-4335362 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zjz.1) at chr6_apd_hap1:4319165-4335362 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zoi.1) at chr6_dbb_hap3:4313685-4329894 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zoh.1) at chr6_dbb_hap3:4313685-4329894 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zqq.1) at chr6_mann_hap4:4489886-4506101 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zqp.1) at chr6_mann_hap4:4489886-4506101 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zsy.1) at chr6_mcf_hap5:4369219-4385416 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zsx.1) at chr6_mcf_hap5:4369219-4385416 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zvi.1) at chr6_qbl_hap6:4264797-4281012 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zvh.1) at chr6_qbl_hap6:4264797-4281012 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc021zye.1) at chr6_ssto_hap7:4512850-4529059 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 3, mRNA.
HLA-DPA1 (uc021zyd.1) at chr6_ssto_hap7:4512850-4529059 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 2, mRNA.
HLA-DPA1 (uc010juk.3) at chr6:33036258-33041370 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011esn.2) at chr6_apd_hap1:4323077-4328171 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011fph.2) at chr6_cox_hap2:4480438-4485634 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011glm.2) at chr6_dbb_hap3:4317597-4322709 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011hga.2) at chr6_mann_hap4:4493798-4498910 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011ibi.2) at chr6_mcf_hap5:4373131-4378225 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011iyt.2) at chr6_qbl_hap6:4268709-4273821 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DPA1 (uc011jud.2) at chr6_ssto_hap7:4516762-4521874 - Homo sapiens major histocompatibility complex, class II, DP alpha 1 (HLA-DPA1), transcript variant 1, mRNA.
HLA-DQA2 (uc003obx.3) at chr6:32709163-32714664 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc011erk.2) at chr6_apd_hap1:3997440-4002942 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc011fnw.2) at chr6_cox_hap2:4155064-4160566 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc011gke.2) at chr6_dbb_hap3:3991726-3997229 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc021zqi.1) at chr6_mann_hap4:4166321-4171833 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc011hzy.2) at chr6_mcf_hap5:4046345-4051847 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc021zva.1) at chr6_qbl_hap6:3941246-3946758 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DQA2 (uc011jss.2) at chr6_ssto_hap7:4140831-4146332 - Homo sapiens major histocompatibility complex, class II, DQ alpha 2 (HLA-DQA2), mRNA.
HLA-DRA (uc003obh.3) at chr6:32407619-32412826 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011fnf.2) at chr6_cox_hap2:3878074-3883242 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011gju.2) at chr6_dbb_hap3:3685732-3690942 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011hek.2) at chr6_mann_hap4:3749679-3754894 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011hzp.2) at chr6_mcf_hap5:3786393-3791603 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011iwy.2) at chr6_qbl_hap6:3668487-3673697 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRA (uc011jsf.2) at chr6_ssto_hap7:3754283-3759493 - Homo sapiens major histocompatibility complex, class II, DR alpha (HLA-DRA), mRNA.
HLA-DRB1 (uc021zuz.1) at chr6_qbl_hap6:3722081-3798012 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 2, mRNA.
HLA-DRB1 (uc003obp.4) at chr6:32546547-32557613 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 1, mRNA.
HLA-DRB1 (uc021zuy.1) at chr6_qbl_hap6:3720949-3798012 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 2, mRNA.
HLA-DRB1 (uc021zmd.1) at chr6_cox_hap2:3934125-4011553 - Homo sapiens major histocompatibility complex, class II, DR beta 1 (HLA-DRB1), transcript variant 2, mRNA.
HLA-DRB4 (uc011hzq.2) at chr6_mcf_hap5:3882324-3897292 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRB4 (uc011jsg.2) at chr6_ssto_hap7:3850434-3865402 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRB4 (uc011hel.2) at chr6_mann_hap4:3846266-3860953 - Homo sapiens major histocompatibility complex, class II, DR beta 4 (HLA-DRB4), mRNA.
HLA-DRB5 (uc003obj.3) at chr6:32485154-32498006 - Homo sapiens major histocompatibility complex, class II, DR beta 5 (HLA-DRB5), mRNA.
HLA-DRB5 (uc003obk.4) at chr6:32485154-32557613 - Homo sapiens major histocompatibility complex, class II, DR beta 5 (HLA-DRB5), mRNA.
HLA-DRB3 (uc011fni.1) at chr6_cox_hap2:3934127-3947195 - Homo sapiens major histocompatibility complex, class II, DR beta 3 (HLA-DRB3), mRNA.
HLA-DPB1 (uc003ocu.2) at chr6:33043703-33057473 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011esq.2) at chr6_apd_hap1:4330504-4344264 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011glp.2) at chr6_dbb_hap3:4325042-4338804 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011hgd.2) at chr6_mann_hap4:4501243-4515019 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011ibl.2) at chr6_mcf_hap5:4380558-4394318 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011iyw.2) at chr6_qbl_hap6:4276154-4289926 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
HLA-DPB1 (uc011jug.2) at chr6_ssto_hap7:4524207-4537977 - Homo sapiens major histocompatibility complex, class II, DP beta 1 (HLA-DPB1), mRNA.
L25629 (uc004apn.1) at chr9:90459107-90459614 - Human cathepsin-L-like (CTSLL3) mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001257972.1 at chr9:90340974-90346384
NM_001257973.1 at chr9:90340974-90346384
NM_145918.2 at chr9:90340974-90346384
NM_001257971.1 at chr9:90340974-90346384
NM_001912.4 at chr9:90340974-90346384
NR_027917.1 at chr9:90387830-90401799
NR_033407.1 at chr10:48155943-48158691
NR_033405.1 at chr9:90459660-90462339

RefSeq Genes

CTSL at chr9:90341034-90346384 - (NM_001257971) cathepsin L1 isoform 1 preproprotein
CTSL at chr9:90341034-90346384 - (NM_001257973) cathepsin L1 isoform 2
CTSL at chr9:90341034-90346384 - (NM_001257972) cathepsin L1 isoform 1 preproprotein
CTSL at chr9:90341034-90346384 - (NM_145918) cathepsin L1 isoform 1 preproprotein
CTSL at chr9:90341034-90346384 - (NM_001912) cathepsin L1 isoform 1 preproprotein
CTSL3P at chr9:90387830-90401799 - (NR_027917) 
CTSLP2 at chr10:48155943-48158691 - (NR_033407) 
CTSLP2 at chr10:47270681-47273431 - (NR_033407) 
CTSLP8 at chr9:90459660-90462339 - (NR_033405) 

NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)

CTSLP6 at chr10:81629807-81633671
CTSLP4 at chr10:52464418-52468675
CTSLP3 at chr10:48980297-48981273
CTSLP1 at chr10:89146118-89149972

Non-Human RefSeq Genes

ctsl at chr9:99795240-99799677 - (NM_001292876) cathepsin L1 precursor
ctsl at chr9:90342945-90462236 - (NM_001310011) cathepsin L1 precursor
ctsl at chr9:90342940-90346022 - (NM_001200253) cathepsin L1 precursor
ctsl at chr10:81630131-81632905 - (NM_001200253) cathepsin L1 precursor
ctsl at chr9:99795231-99799680 - (NM_001104686) cathepsin L1 precursor
ctsl at chr9:90342945-90462236 - (NM_001104686) cathepsin L1 precursor
CTSL at chr9:99795089-99800337 - (NM_001083686) cathepsin L1 precursor
CTSL at chr9:90342507-90462489 - (NM_001083686) cathepsin L1 precursor
Ctsl at chr9:99795159-99799899 - (NM_013156) cathepsin L1 preproprotein
Ctsl at chr9:90342940-90462233 - (NM_013156) cathepsin L1 preproprotein
Ctsl at chr9:99795095-99800333 - (NM_009984) cathepsin L1 preproprotein
ctsl.1 at chr9:99795231-99799029 - (NM_001002368) cathepsin L.1 precursor
ctsla at chr9:90342945-90462236 - (NM_212584) cathepsin L1 precursor
ctsla at chr10:89146442-89149209 - (NM_212584) cathepsin L1 precursor
ctsla at chr10:81630131-81632689 - (NM_212584) cathepsin L1 precursor
ctslb at chr9:99795240-99799680 - (NM_131198) cathepsin Lb precursor
ctslb at chr9:90343165-90345363 - (NM_131198) cathepsin Lb precursor
ctsll at chr9:90342945-90461606 - (NM_001005999) cathepsin L, like
Ctsll3 at chr9:90342941-90346033 - (NM_027344) cathepsin L-like 3 precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CTSL at chr9:90341024-90346301
CTSL at chr9:90341034-90346384
CTSL at chr9:90341055-90343912

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CTSL at chr9:90341024-90346301
CTSL at chr9:90341029-90345988
CTSL at chr9:90341034-90346384
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912
CTSL at chr9:90341055-90344595

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341055-90343912

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341029-90345988
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912
CTSL at chr9:90341055-90344595

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341055-90343912

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341029-90345988
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912
CTSL at chr9:90341055-90344595

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341055-90343912

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341029-90345988
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912
CTSL at chr9:90341055-90344595

Basic Gene Annotation Set from GENCODE Version 19

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912

Comprehensive Gene Annotation Set from GENCODE Version 19

CTSL at chr9:90340434-90346307
CTSL at chr9:90341024-90346301
CTSL at chr9:90341029-90345988
CTSL at chr9:90341049-90346308
CTSL at chr9:90341055-90343912
CTSL at chr9:90341055-90344595

Retroposed Genes V5, Including Pseudogenes

CTSL2_HUMAN at chrX:105314274-105317369 - (AK291230.1-3)
CTSL2_HUMAN at chrX:99404203-99406533 - (NM_016396.2-3)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ctsll3_46432 at chr9:90459660-90462339
Ctsl_24500 at chr9:90340974-90346384
Ctsl_49838 at chr9:90340974-90346384
Ctsl_70126 at chr9:90340974-90346384

Human Aligned mRNA Search Results

BC023504 - Homo sapiens cathepsin L2, mRNA (cDNA clone MGC:2011 IMAGE:3139314), complete cds.
CR457053 - Homo sapiens full open reading frame cDNA clone RZPDo834B0418D for gene CTSL, cathepsin L; complete cds, incl. stopcodon.
BC110512 - Homo sapiens cathepsin L2, mRNA (cDNA clone MGC:125957 IMAGE:40031744), complete cds.
BC012612 - Homo sapiens cathepsin L1, mRNA (cDNA clone MGC:13635 IMAGE:4295635), complete cds.
BC142983 - Homo sapiens cathepsin L1, mRNA (cDNA clone MGC:167089 IMAGE:8860422), complete cds.
L25629 - Human cathepsin-L-like (CTSLL3) mRNA.
L25628 - Human cathepsin-L-like (CTSLL2) mRNA.
AK312806 - Homo sapiens cDNA, FLJ93235, highly similar to Homo sapiens cathepsin L2 (CTSL2), mRNA.

Human Unaligned mRNA Search Results

NR_033405 - Homo sapiens cathepsin L pseudogene 8 (CTSLP8), non-coding RNA.
NR_033407 - Homo sapiens cathepsin L pseudogene 2 (CTSLP2), non-coding RNA.
NR_027917 - Homo sapiens cathepsin L family member 3, pseudogene (CTSL3P), non-coding RNA.

Non-Human Aligned mRNA Search Results

BC134741 - Bos taurus cathepsin L1, mRNA (cDNA clone MGC:157400 IMAGE:8387836), complete cds.
BC102312 - Bos taurus cathepsin L2, mRNA (cDNA clone MGC:127464 IMAGE:7949185), complete cds.
BC108031 - Danio rerio cathepsin L, 1 b, mRNA (cDNA clone MGC:123162 IMAGE:7284757), complete cds.
BC083200 - Danio rerio cathepsin L, like, mRNA (cDNA clone MGC:101557 IMAGE:7222106), complete cds.
BC075887 - Danio rerio cathepsin L.1, mRNA (cDNA clone MGC:92089 IMAGE:7047077), complete cds.
BC066490 - Danio rerio cathepsin L1, a, mRNA (cDNA clone MGC:76945 IMAGE:6525005), complete cds.
CR760760 - Xenopus tropicalis finished cDNA, clone TTpA002p12.
AB099890 - Oryzias latipes ctsL mRNA for cathepsin L, complete cds.
EF015467 - Hippoglossus hippoglossus cathepsin L (ctsL) mRNA, complete cds.
BC068163 - Mus musculus cathepsin L, mRNA (cDNA clone MGC:93008 IMAGE:30359160), complete cds.
BC063175 - Rattus norvegicus cathepsin L1, mRNA (cDNA clone MGC:72924 IMAGE:6918389), complete cds.
LN715177 - Strongyloides stercoralis partial mRNA for Cathepsin L (CtsL gene).
KJ871613 - Marsupenaeus japonicus cathepsin L (CTSL) mRNA, complete cds.
AY890446 - Synthetic construct Homo sapiens clone FLH140202.01X cathepsin L (CTSL) mRNA, complete cds.
AY893779 - Synthetic construct Homo sapiens clone FLH053856.01L cathepsin L (CTSL) mRNA, partial cds.
JT417657 - TSA: Ictalurus punctatus aby_k73:586857 mRNA sequence.
AB128161 - Cyprinus carpio CTSL mRNA for cathepsin L preproprotein, complete cds.
KM522787 - Sparus aurata cathepsin L (CTSL) mRNA, complete cds.
KP455635 - Ctenopharyngodon idella cathepsin L precursor (CTSL) mRNA, complete cds.
MH580287 - Acipenser sinensis cathepsin L (CTSL) mRNA, complete cds.
HG710127 - Tityus serrulatus partial mRNA for cathepsin L-like cysteine peptidase 8 (ctsl gene).
HG710129 - Tityus serrulatus partial mRNA for cathepsin L-like cysteine peptidase 10 (ctsl gene).
HG710154 - Tityus serrulatus partial mRNA for cathepsin L-like cysteine peptidase 1 (ctsl gene).
HG710155 - Tityus serrulatus mRNA for cathepsin L-like cysteine peptidase 2 (ctsl gene).
HG710156 - Tityus serrulatus mRNA for cathepsin L-like cysteine peptidase 3 (ctsl gene).
HG710158 - Tityus serrulatus mRNA for cathepsin L-like cysteine peptidase 5 (ctsl gene).
HG710159 - Tityus serrulatus mRNA for cathepsin L-like cysteine peptidase 6 (ctsl gene).
KT780367 - Ictalurus punctatus cathepsin La (ctsla) mRNA, complete cds.
KX013127 - Tyto alba isolate M022138 cathepsin L2 (CTSL2) mRNA, complete cds.
DQ152935 - Ovis aries cathepsin L2 (CTSL2) mRNA, partial cds.
BC151425 - Bos taurus cathepsin L2, mRNA (cDNA clone MGC:179266 IMAGE:7954194), complete cds.
BT021022 - Bos taurus cathepsin L2 (CTSL2), mRNA, complete cds.
JU323374 - TSA: Macaca mulatta Mamu_506758 mRNA sequence.
JV044398 - TSA: Macaca mulatta Mamu_416601 mRNA sequence.
KX013126 - Tyto alba isolate M022138 cathepsin L1 (CTSL1) mRNA, complete cds.
JU323190 - TSA: Macaca mulatta Mamu_531918 mRNA sequence.
JU471611 - TSA: Macaca mulatta Mamu_369811 mRNA sequence.
JV043388 - TSA: Macaca mulatta Mamu_405325 mRNA sequence.
HG710130 - Tityus serrulatus partial mRNA for cathepsin L-like cysteine peptidase 11 (ctsl gene).

Ensembl Genes

CTSL3P at chr9:90387830-90401799 - (ENST00000354530)
CTSL at chr9:90341055-90343912 - (ENST00000342020)
CTSL at chr9:90341049-90346308 - (ENST00000495822)
CTSL at chr9:90341024-90346301 - (ENST00000340342)
CTSLP1 at chr10:89146442-89149960 - (ENST00000457530)
CTSLP4 at chr10:52465140-52468666 - (ENST00000454614)
CTSLP2 at chr10:48157041-48158148 - (ENST00000428057)
CTSLP5 at chr10:46790404-46791522 - (ENST00000443343)
CTSLP7 at chr10:47271222-47272342 - (ENST00000423775)
CTSLP3 at chr10:48980162-48981273 - (ENST00000458206)
CTSLP6 at chr10:81630131-81633659 - (ENST00000458273)
CTSL at chr9:90340434-90346307 - (ENST00000343150)
CTSL at chr9:90341029-90345988 - (ENST00000375894)
CTSL at chr9:90341055-90344595 - (ENST00000482054)
CTSL3P at chr9:90387368-90389214 - (ENST00000412179)
CTSLP8 at chr9:90459067-90462229 - (ENST00000413075)

Vega Protein-Coding Annotations

OTTHUMT00000052936 at chr9:90340434-90346307
OTTHUMT00000052937 at chr9:90341024-90346301
OTTHUMT00000052940 at chr9:90341029-90345988
OTTHUMT00000052938 at chr9:90341049-90346308
OTTHUMT00000052941 at chr9:90341055-90344595
OTTHUMT00000052939 at chr9:90341055-90343912
OTTHUMT00000053301 at chr9:99794940-99801592
OTTHUMT00000053302 at chr9:99799573-99801424

Vega Annotated Pseudogenes and Immunoglobulin Segments

OTTHUMT00000049220 at chr10:89146442-89149960
OTTHUMT00000047877 at chr10:48157041-48158148
OTTHUMT00000047908 at chr10:48980162-48981273
OTTHUMT00000048080 at chr10:52465140-52468666
OTTHUMT00000047820 at chr10:46790404-46791522
OTTHUMT00000049010 at chr10:81630131-81633659
OTTHUMT00000047841 at chr10:47271222-47272342